>METE_AQUAE (O67606) 5-methyltetrahydropteroyltriglutamate--homocysteine|
           methyltransferase (EC 2.1.1.14) (Methionine synthase,
           vitamin-B12 independent isozyme) (Cobalamin-independent
           methionine synthase)
          Length = 761

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -1

Query: 324 ALSLLDIFEDKDDA**RLLSADQGTVEEGTACNKMDW 214
           AL+LLD  +D ++A  +++  D+    EG    K DW
Sbjct: 581 ALALLDEVKDLENAGIKVIQIDEPAFREGAPLKKRDW 617

>VAL1_BCTV (P14991) AL1 protein (40.8 kDa protein)|
          Length = 358

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +2

Query: 38  P*QYISYVHEGSSSAAITTHYRQRGAHNFIAHKMENPIKLTY 163
           P +Y S + EG S    T   R  GAHN+I   ++  ++  Y
Sbjct: 212 PLRYNSIIVEGDSRTGKTMWARSLGAHNYITGHLDFSLRTYY 253

>FZO_DROSI (Q9N6P4) Transmembrane GTPase fzo (EC 3.6.5.-) (Protein fuzzy|
           onions) (Fragment)
          Length = 454

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 13/46 (28%), Positives = 26/46 (56%)
 Frame = +2

Query: 44  QYISYVHEGSSSAAITTHYRQRGAHNFIAHKMENPIKLTYISPLID 181
           +++ + ++ S+  A++    + G H   A K+ N +K T ISP I+
Sbjct: 69  EFLRFENDFSNCLAVSALKTKFGPHLLSAQKILNQLKSTLISPFIE 114

>RSBW_BACHK (Q6HMH0) Serine-protein kinase rsbW (EC 2.7.11.1) (Anti-sigma-B|
           factor) (Sigma-B negative effector rsbW)
          Length = 160

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = -2

Query: 293 RMMHDEGCSVLIRGLLRKEQRAIRWTGVYIHTYDLY 186
           ++MHDEG +VL+   +++EQ  +   G  I TY+ Y
Sbjct: 127 QIMHDEGMTVLMTKYIQREQ--VENDGNPISTYESY 160

>RSBW_BACCZ (Q63F14) Serine-protein kinase rsbW (EC 2.7.11.1) (Anti-sigma-B|
           factor) (Sigma-B negative effector rsbW)
          Length = 160

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = -2

Query: 293 RMMHDEGCSVLIRGLLRKEQRAIRWTGVYIHTYDLY 186
           ++MHDEG +VL+   +++EQ  +   G  I TY+ Y
Sbjct: 127 QIMHDEGMTVLMTKYIQREQ--VENDGNPISTYESY 160

>RSBW_BACCR (Q81H23) Serine-protein kinase rsbW (EC 2.7.11.1) (Anti-sigma-B|
           factor) (Sigma-B negative effector rsbW)
          Length = 160

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = -2

Query: 293 RMMHDEGCSVLIRGLLRKEQRAIRWTGVYIHTYDLY 186
           ++MHDEG +VL+   +++EQ  +   G  I TY+ Y
Sbjct: 127 QIMHDEGMTVLMTKYIQREQ--VENDGNPISTYESY 160

>RSBW_BACAN (Q9K5J7) Serine-protein kinase rsbW (EC 2.7.11.1) (Anti-sigma-B|
           factor) (Sigma-B negative effector rsbW)
          Length = 160

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = -2

Query: 293 RMMHDEGCSVLIRGLLRKEQRAIRWTGVYIHTYDLY 186
           ++MHDEG +VL+   +++EQ  +   G  I TY+ Y
Sbjct: 127 QIMHDEGMTVLMTKYIQREQ--VENDGNPISTYESY 160

>CCMA_BORBR (Q7WIP8) Cytochrome c biogenesis ATP-binding export protein ccmA|
           (EC 3.6.3.41) (Heme exporter protein A)
          Length = 224

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -2

Query: 260 IRGLLRKEQRAIRWTGVYIHTYDLYHYQLMVIY 162
           + GLLR  +  +RW G  IH  DL  Y L + Y
Sbjct: 53  LAGLLRPRRGEVRWNGADIHA-DLPGYYLHMAY 84

>UBP7_YEAST (P40453) Ubiquitin carboxyl-terminal hydrolase 7 (EC 3.1.2.15)|
           (Ubiquitin thioesterase 7)
           (Ubiquitin-specific-processing protease 7)
           (Deubiquitinating enzyme 7)
          Length = 1071

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -2

Query: 332 SPRLSPSLIYLKTRMMHDEGCSVLIRGLLR 243
           SP+LS SL  L  +M  + GCSV+  G L+
Sbjct: 657 SPKLSNSLSMLFNKMYLNGGCSVVPTGFLK 686


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,676,533
Number of Sequences: 219361
Number of extensions: 860594
Number of successful extensions: 1619
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1619
length of database: 80,573,946
effective HSP length: 86
effective length of database: 61,708,900
effective search space used: 1481013600
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)