ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet11c08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AL591804.5| Human DNA sequence from clone RP11-457O1 on chro... 40 2.5
2gb|AC011291.8| Homo sapiens BAC clone RP11-67G7 from 2, complete... 40 2.5
3ref|XM_507934.1| PREDICTED: Pan troglodytes similar to chromosom... 38 9.9
4gb|AC147812.2| Oryza sativa (japonica cultivar-group) chromosome... 38 9.9
5gb|AE017355.1| Bacillus thuringiensis serovar konkukian str. 97-... 38 9.9
6ref|XM_587564.2| PREDICTED: Bos taurus similar to nucleolar comp... 38 9.9
7gb|AC148311.2| Pan troglodytes BAC clone RP43-29P9 from 7, compl... 38 9.9
8gb|AC163269.3| Mus musculus chromosome 15, clone RP24-276M6, com... 38 9.9
9ref|NM_022451.9| Homo sapiens nucleolar complex associated 3 hom... 38 9.9
10gb|AC113028.15| Mus musculus chromosome 5, clone RP23-205D3, com... 38 9.9
11gb|AC161758.3| Mus musculus BAC clone RP23-455F6 from chromosome... 38 9.9
12ref|XM_534972.2| PREDICTED: Canis familiaris similar to CG1234-P... 38 9.9
13gb|AC146511.3| Pan troglodytes BAC clone RP43-72N15 from 7, comp... 38 9.9
14gb|AC145988.3| Pan troglodytes BAC clone RP43-166E1 from 7, comp... 38 9.9
15gb|AC128672.4| Mus musculus BAC clone RP23-136O15 from chromosom... 38 9.9
16gb|AC125053.4| Mus musculus BAC clone RP23-389L19 from chromosom... 38 9.9
17gb|AC123695.10| Mus musculus chromosome 15, clone RP23-328C23, c... 38 9.9
18gb|AC124185.3| Mus musculus BAC clone RP23-230F5 from 1, complet... 38 9.9
19gb|AC125094.5| Mus musculus BAC clone RP24-176L12 from chromosom... 38 9.9
20gb|AC110820.4| Mus musculus BAC clone RP23-273L3 from 15, comple... 38 9.9
21gb|AC073137.7| Homo sapiens BAC clone RP11-703P11 from 7, comple... 38 9.9
22gb|BC049850.1| Homo sapiens nucleolar complex associated 3 homol... 38 9.9
23emb|AL390878.6| Human DNA sequence from clone RP11-442F12 on chr... 38 9.9
24emb|AL355341.19| Human DNA sequence from clone RP11-146P21 on ch... 38 9.9
25emb|AL035469.7|HS46B1 Human DNA sequence from clone RP1-46B1 on ... 38 9.9
26gb|AC083903.10| Homo sapiens BAC clone RP11-785G23 from UL, comp... 38 9.9
27emb|CR858382.1| Pongo pygmaeus mRNA; cDNA DKFZp459M1032 (from cl... 38 9.9
28gb|AC161816.5| Mus musculus BAC clone RP23-308L3 from chromosome... 38 9.9
29emb|AL031307.1|SPCC663 S.pombe chromosome III cosmid c663 38 9.9
30emb|AL731818.6| Mouse DNA sequence from clone RP23-401L13 on chr... 38 9.9
31gb|AC154642.2| Mus musculus BAC clone RP23-277C14 from chromosom... 38 9.9
32emb|CR859543.1| Pongo pygmaeus mRNA; cDNA DKFZp459L1124 (from cl... 38 9.9
33dbj|AK091246.1| Homo sapiens cDNA FLJ33927 fis, clone CTONG2017429 38 9.9
34dbj|AK022882.1| Homo sapiens cDNA FLJ12820 fis, clone NT2RP2002736 38 9.9
35emb|BX537152.15| Zebrafish DNA sequence from clone DKEY-61N7 in ... 38 9.9
36emb|BX510304.12| Mouse DNA sequence from clone RP23-128I6 on chr... 38 9.9
37dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 38 9.9
38dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 38 9.9
39gb|AC092915.7| Homo sapiens 3 BAC RP11-585F20 (Roswell Park Canc... 38 9.9
40ref|XM_574664.1| PREDICTED: Rattus norvegicus similar to AD24 (L... 38 9.9
41gb|AC012487.12| Homo sapiens BAC clone RP11-85M14 from 2, comple... 38 9.9
42dbj|AB077992.1| Homo sapiens mRNA for AD24, complete cds 38 9.9
43emb|AL807396.9| Mouse DNA sequence from clone RP23-105P9 on chro... 38 9.9
44dbj|AB002334.1| Homo sapiens mRNA for KIAA0336 gene, partial cds 38 9.9
45dbj|AP004459.2| Oryza sativa (japonica cultivar-group) genomic D... 38 9.9
46dbj|AP005521.4| Oryza sativa (japonica cultivar-group) genomic D... 38 9.9
47dbj|AK026953.1| Homo sapiens cDNA: FLJ23300 fis, clone HEP10984 38 9.9
48gb|AC147869.3| Monodelphis domestica clone VMRC6-113K21, complet... 38 9.9
49gb|AC144691.3| Didelphis virginiana clone LB3-241H11, complete s... 38 9.9
50gb|AC129066.3| Didelphis virginiana clone LB3-8N21, complete seq... 38 9.9
51emb|BX897665.7| Zebrafish DNA sequence from clone DKEY-27K7 in l... 38 9.9
52gb|AC115012.9| Mus musculus chromosome 3, clone RP24-192J5, comp... 38 9.9
53emb|AL928691.7| Zebrafish DNA sequence from clone CH211-51H20 in... 38 9.9
54gb|AC115822.9| Mus musculus chromosome 18, clone RP23-406D17, co... 38 9.9
55ref|NM_181453.2| Homo sapiens GRIP and coiled-coil domain contai... 38 9.9
56ref|NM_014635.3| Homo sapiens GRIP and coiled-coil domain contai... 38 9.9
57gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 38 9.9
58emb|AL845278.19| Mouse DNA sequence from clone RP23-37H22 on chr... 38 9.9
59gb|AC122444.4| Mus musculus BAC clone RP24-232I9 from 9, complet... 38 9.9
60gb|AC139185.5| Mus musculus BAC clone RP24-91B1 from 6, complete... 38 9.9
61gb|DP000023.1| Didelphis virginiana target 1 genomic scaffold 38 9.9
62gb|DP000021.1| Monodelphis domestica target 1 genomic scaffold 38 9.9
63gb|AC156790.2| Mus musculus BAC clone RP24-359N3 from chromosome... 38 9.9
64gb|AC110196.9| Mus musculus chromosome 15, clone RP24-343E7, com... 38 9.9
65emb|AL806532.10| Mouse DNA sequence from clone RP23-387D16 on ch... 38 9.9
66emb|AL592422.11| Mouse DNA sequence from clone RP23-218O16 on ch... 38 9.9
67gb|AC163216.10| Mus musculus chromosome 1, clone RP23-69G5, comp... 38 9.9
68emb|AL732603.3| Mouse DNA sequence from clone RP23-154H8 on chro... 38 9.9
69emb|AL669955.6| Mouse DNA sequence from clone RP23-188F1 on chro... 38 9.9 
>emb|AL591804.5| Human DNA sequence from clone RP11-457O1 on chromosome X, complete
             sequence
          Length = 112366

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 62    ctgcatactatctttttcca 81
             ||||||||||||||||||||
Sbjct: 90051 ctgcatactatctttttcca 90032
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>gb|AC011291.8| Homo sapiens BAC clone RP11-67G7 from 2, complete sequence
          Length = 150214

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 40    tagaatatgaaaagcagtctaact 63
             |||||||||| |||||||||||||
Sbjct: 57275 tagaatatgataagcagtctaact 57298
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>ref|XM_507934.1| PREDICTED: Pan troglodytes similar to chromosome 10 open reading
            frame 117; AD24 protein (LOC450621), mRNA
          Length = 2763

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 41   agaatatgaaaagcagtct 59
            |||||||||||||||||||
Sbjct: 1110 agaatatgaaaagcagtct 1092
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>gb|AC147812.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0073K23 map near R10571S, complete sequence
          Length = 161073

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 106   aagatgacaagacatcaca 124
             |||||||||||||||||||
Sbjct: 19443 aagatgacaagacatcaca 19425
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>gb|AE017355.1| Bacillus thuringiensis serovar konkukian str. 97-27, complete genome
          Length = 5237682

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 66     atactatctttttccaaaa 84
              |||||||||||||||||||
Sbjct: 894919 atactatctttttccaaaa 894901
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>ref|XM_587564.2| PREDICTED: Bos taurus similar to nucleolar complex associated 3
            homolog (LOC510425), mRNA
          Length = 3665

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 41   agaatatgaaaagcagtct 59
            |||||||||||||||||||
Sbjct: 1694 agaatatgaaaagcagtct 1676
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>gb|AC148311.2| Pan troglodytes BAC clone RP43-29P9 from 7, complete sequence
          Length = 161683

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 70    tatctttttccaaaagaaa 88
             |||||||||||||||||||
Sbjct: 59311 tatctttttccaaaagaaa 59329
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>gb|AC163269.3| Mus musculus chromosome 15, clone RP24-276M6, complete sequence
          Length = 172683

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 39     atagaatatgaaaagcagt 57
              |||||||||||||||||||
Sbjct: 167822 atagaatatgaaaagcagt 167840
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>ref|NM_022451.9| Homo sapiens nucleolar complex associated 3 homolog (S. cerevisiae)
            (NOC3L), mRNA
          Length = 3475

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 41   agaatatgaaaagcagtct 59
            |||||||||||||||||||
Sbjct: 1785 agaatatgaaaagcagtct 1767
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>gb|AC113028.15| Mus musculus chromosome 5, clone RP23-205D3, complete sequence
          Length = 275646

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 74     tttttccaaaagaaagttt 92
              |||||||||||||||||||
Sbjct: 144669 tttttccaaaagaaagttt 144687
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>gb|AC161758.3| Mus musculus BAC clone RP23-455F6 from chromosome 14, complete sequence
          Length = 171133

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 39    atagaatatgaaaagcagt 57
             |||||||||||||||||||
Sbjct: 13393 atagaatatgaaaagcagt 13411
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>ref|XM_534972.2| PREDICTED: Canis familiaris similar to CG1234-PA (LOC477778), mRNA
          Length = 3213

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 41   agaatatgaaaagcagtct 59
            |||||||||||||||||||
Sbjct: 2402 agaatatgaaaagcagtct 2384
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>gb|AC146511.3| Pan troglodytes BAC clone RP43-72N15 from 7, complete sequence
          Length = 192395

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 70     tatctttttccaaaagaaa 88
              |||||||||||||||||||
Sbjct: 119102 tatctttttccaaaagaaa 119084
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>gb|AC145988.3| Pan troglodytes BAC clone RP43-166E1 from 7, complete sequence
          Length = 162223

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 114    aagacatcacagccttgct 132
              |||||||||||||||||||
Sbjct: 143047 aagacatcacagccttgct 143065
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>gb|AC128672.4| Mus musculus BAC clone RP23-136O15 from chromosome 18, complete sequence
          Length = 215137

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 39     atagaatatgaaaagcagt 57
              |||||||||||||||||||
Sbjct: 208002 atagaatatgaaaagcagt 207984
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>gb|AC125053.4| Mus musculus BAC clone RP23-389L19 from chromosome 18, complete sequence
          Length = 189741

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 39     atagaatatgaaaagcagt 57
              |||||||||||||||||||
Sbjct: 142067 atagaatatgaaaagcagt 142085
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>gb|AC123695.10| Mus musculus chromosome 15, clone RP23-328C23, complete sequence
          Length = 217334

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 39    atagaatatgaaaagcagt 57
             |||||||||||||||||||
Sbjct: 15158 atagaatatgaaaagcagt 15176
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>gb|AC124185.3| Mus musculus BAC clone RP23-230F5 from 1, complete sequence
          Length = 195372

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 39     atagaatatgaaaagcagt 57
              |||||||||||||||||||
Sbjct: 149469 atagaatatgaaaagcagt 149451
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>gb|AC125094.5| Mus musculus BAC clone RP24-176L12 from chromosome 16, complete
             sequence
          Length = 170842

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 39    atagaatatgaaaagcagt 57
             |||||||||||||||||||
Sbjct: 43855 atagaatatgaaaagcagt 43873
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>gb|AC110820.4| Mus musculus BAC clone RP23-273L3 from 15, complete sequence
          Length = 168415

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 39   atagaatatgaaaagcagt 57
            |||||||||||||||||||
Sbjct: 9495 atagaatatgaaaagcagt 9477
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>gb|AC073137.7| Homo sapiens BAC clone RP11-703P11 from 7, complete sequence
          Length = 168637

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 114   aagacatcacagccttgct 132
             |||||||||||||||||||
Sbjct: 40388 aagacatcacagccttgct 40370
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>gb|BC049850.1| Homo sapiens nucleolar complex associated 3 homolog (S. cerevisiae),
            mRNA (cDNA clone MGC:52005 IMAGE:5549517), complete cds
          Length = 3475

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 41   agaatatgaaaagcagtct 59
            |||||||||||||||||||
Sbjct: 1785 agaatatgaaaagcagtct 1767
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>emb|AL390878.6| Human DNA sequence from clone RP11-442F12 on chromosome 13 Contains part
              of the DIAPH3 gene for diaphanous homolog 3 (Drosophila)
              and a novel gene, complete sequence
          Length = 209794

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 71     atctttttccaaaagaaag 89
              |||||||||||||||||||
Sbjct: 168246 atctttttccaaaagaaag 168264
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>emb|AL355341.19| Human DNA sequence from clone RP11-146P21 on chromosome 10 Contains the
             3'end of the PLCE1 gene for phospholipase C, epsilon 1
             (PLCE, KIAA1516), the gene for AD24 protein (FLJ12820),
             the 5'end  of a novel gene (KIAA0608) and a CpG island,
             complete sequence
          Length = 153449

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 41    agaatatgaaaagcagtct 59
             |||||||||||||||||||
Sbjct: 12763 agaatatgaaaagcagtct 12781
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>emb|AL035469.7|HS46B1 Human DNA sequence from clone RP1-46B1 on chromosome 6q12, complete
              sequence
          Length = 158204

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 37     acatagaatatgaaaagca 55
              |||||||||||||||||||
Sbjct: 149180 acatagaatatgaaaagca 149162
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>gb|AC083903.10| Homo sapiens BAC clone RP11-785G23 from UL, complete sequence
          Length = 174480

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 40    tagaatatgaaaagcagtc 58
             |||||||||||||||||||
Sbjct: 41288 tagaatatgaaaagcagtc 41306
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>emb|CR858382.1| Pongo pygmaeus mRNA; cDNA DKFZp459M1032 (from clone DKFZp459M1032)
          Length = 4342

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 40   tagaatatgaaaagcagtc 58
            |||||||||||||||||||
Sbjct: 2974 tagaatatgaaaagcagtc 2992
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>gb|AC161816.5| Mus musculus BAC clone RP23-308L3 from chromosome 16, complete sequence
          Length = 213324

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 39    atagaatatgaaaagcagt 57
             |||||||||||||||||||
Sbjct: 87449 atagaatatgaaaagcagt 87431
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>emb|AL031307.1|SPCC663 S.pombe chromosome III cosmid c663
          Length = 35369

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 74   tttttccaaaagaaagttt 92
            |||||||||||||||||||
Sbjct: 2236 tttttccaaaagaaagttt 2218
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>emb|AL731818.6| Mouse DNA sequence from clone RP23-401L13 on chromosome 11 Contains two
             novel genes, the AI503894 gene for expressed sequence
             AI503894, a laminin receptor 1 (ribosomal protein
             SA)(Lamr1) pseudogene and a CpG island, complete sequence
          Length = 201664

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 39    atagaatatgaaaagcagt 57
             |||||||||||||||||||
Sbjct: 90438 atagaatatgaaaagcagt 90456
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>gb|AC154642.2| Mus musculus BAC clone RP23-277C14 from chromosome 14, complete sequence
          Length = 211315

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 39     atagaatatgaaaagcagt 57
              |||||||||||||||||||
Sbjct: 144917 atagaatatgaaaagcagt 144935
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>emb|CR859543.1| Pongo pygmaeus mRNA; cDNA DKFZp459L1124 (from clone DKFZp459L1124)
          Length = 3519

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 41   agaatatgaaaagcagtct 59
            |||||||||||||||||||
Sbjct: 1847 agaatatgaaaagcagtct 1829
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>dbj|AK091246.1| Homo sapiens cDNA FLJ33927 fis, clone CTONG2017429
          Length = 2990

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 41   agaatatgaaaagcagtct 59
            |||||||||||||||||||
Sbjct: 1792 agaatatgaaaagcagtct 1774
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>dbj|AK022882.1| Homo sapiens cDNA FLJ12820 fis, clone NT2RP2002736
          Length = 2401

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 41  agaatatgaaaagcagtct 59
           |||||||||||||||||||
Sbjct: 746 agaatatgaaaagcagtct 728
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>emb|BX537152.15| Zebrafish DNA sequence from clone DKEY-61N7 in linkage group 14, complete
              sequence
          Length = 243729

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 132    taatttatgatctgcaaga 150
              |||||||||||||||||||
Sbjct: 163307 taatttatgatctgcaaga 163289
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>emb|BX510304.12| Mouse DNA sequence from clone RP23-128I6 on chromosome 2, complete
             sequence
          Length = 160779

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 39    atagaatatgaaaagcagt 57
             |||||||||||||||||||
Sbjct: 88190 atagaatatgaaaagcagt 88172
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 106     aagatgacaagacatcaca 124
               |||||||||||||||||||
Sbjct: 3394851 aagatgacaagacatcaca 3394869
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                       
Query: 66       atactatctttttccaaaagaaa 88
                ||||||||||||| |||||||||
Sbjct: 19989016 atactatcttttttcaaaagaaa 19989038



 Score = 38.2 bits (19), Expect = 9.9
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                       
Query: 66       atactatctttttccaaaagaaa 88
                ||||||||||||| |||||||||
Sbjct: 15685180 atactatcttttttcaaaagaaa 15685202
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>gb|AC092915.7| Homo sapiens 3 BAC RP11-585F20 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 187215

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 114  aagacatcacagccttgct 132
            |||||||||||||||||||
Sbjct: 7176 aagacatcacagccttgct 7158
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>ref|XM_574664.1| PREDICTED: Rattus norvegicus similar to AD24 (LOC361753), mRNA
          Length = 2397

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 41   agaatatgaaaagcagtct 59
            |||||||||||||||||||
Sbjct: 1657 agaatatgaaaagcagtct 1639
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>gb|AC012487.12| Homo sapiens BAC clone RP11-85M14 from 2, complete sequence
          Length = 156602

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 40    tagaatatgaaaagcagtc 58
             |||||||||||||||||||
Sbjct: 21077 tagaatatgaaaagcagtc 21095
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>dbj|AB077992.1| Homo sapiens mRNA for AD24, complete cds
          Length = 2450

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 41   agaatatgaaaagcagtct 59
            |||||||||||||||||||
Sbjct: 1722 agaatatgaaaagcagtct 1704
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>emb|AL807396.9| Mouse DNA sequence from clone RP23-105P9 on chromosome X, complete
             sequence
          Length = 127065

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 71    atctttttccaaaagaaag 89
             |||||||||||||||||||
Sbjct: 33801 atctttttccaaaagaaag 33819
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>dbj|AB002334.1| Homo sapiens mRNA for KIAA0336 gene, partial cds
          Length = 6773

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 40   tagaatatgaaaagcagtc 58
            |||||||||||||||||||
Sbjct: 3021 tagaatatgaaaagcagtc 3039
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>dbj|AP004459.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0410E11
          Length = 150200

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 66     atactatctttttccaaaagaaa 88
              ||||||||||||| |||||||||
Sbjct: 119335 atactatcttttttcaaaagaaa 119357
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>dbj|AP005521.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0477F03
          Length = 176120

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 66    atactatctttttccaaaagaaa 88
             ||||||||||||| |||||||||
Sbjct: 60867 atactatcttttttcaaaagaaa 60889
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>dbj|AK026953.1| Homo sapiens cDNA: FLJ23300 fis, clone HEP10984
          Length = 2111

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 41  agaatatgaaaagcagtct 59
           |||||||||||||||||||
Sbjct: 446 agaatatgaaaagcagtct 428
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>gb|AC147869.3| Monodelphis domestica clone VMRC6-113K21, complete sequence
          Length = 157763

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 77    ttccaaaagaaagtttgca 95
             |||||||||||||||||||
Sbjct: 86984 ttccaaaagaaagtttgca 87002
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>gb|AC144691.3| Didelphis virginiana clone LB3-241H11, complete sequence
          Length = 158347

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 77     ttccaaaagaaagtttgca 95
              |||||||||||||||||||
Sbjct: 157738 ttccaaaagaaagtttgca 157756
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>gb|AC129066.3| Didelphis virginiana clone LB3-8N21, complete sequence
          Length = 158526

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 77    ttccaaaagaaagtttgca 95
             |||||||||||||||||||
Sbjct: 19011 ttccaaaagaaagtttgca 19029
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>emb|BX897665.7| Zebrafish DNA sequence from clone DKEY-27K7 in linkage group 4,
             complete sequence
          Length = 129995

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 34    agtacatagaatatgaaaa 52
             |||||||||||||||||||
Sbjct: 14783 agtacatagaatatgaaaa 14765
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>gb|AC115012.9| Mus musculus chromosome 3, clone RP24-192J5, complete sequence
          Length = 150447

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 39     atagaatatgaaaagcagt 57
              |||||||||||||||||||
Sbjct: 116101 atagaatatgaaaagcagt 116119
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>emb|AL928691.7| Zebrafish DNA sequence from clone CH211-51H20 in linkage group 14,
              complete sequence
          Length = 167320

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 132    taatttatgatctgcaaga 150
              |||||||||||||||||||
Sbjct: 156834 taatttatgatctgcaaga 156852
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>gb|AC115822.9| Mus musculus chromosome 18, clone RP23-406D17, complete sequence
          Length = 160731

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 134   atttatgatctgcaagact 152
             |||||||||||||||||||
Sbjct: 73738 atttatgatctgcaagact 73756
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>ref|NM_181453.2| Homo sapiens GRIP and coiled-coil domain containing 2 (GCC2),
            transcript variant 1, mRNA
          Length = 6918

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 40   tagaatatgaaaagcagtc 58
            |||||||||||||||||||
Sbjct: 3166 tagaatatgaaaagcagtc 3184
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>ref|NM_014635.3| Homo sapiens GRIP and coiled-coil domain containing 2 (GCC2),
            transcript variant 2, mRNA
          Length = 6833

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 40   tagaatatgaaaagcagtc 58
            |||||||||||||||||||
Sbjct: 3081 tagaatatgaaaagcagtc 3099
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 106     aagatgacaagacatcaca 124
               |||||||||||||||||||
Sbjct: 3403556 aagatgacaagacatcaca 3403574
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>emb|AL845278.19| Mouse DNA sequence from clone RP23-37H22 on chromosome 2, complete
             sequence
          Length = 123883

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 39    atagaatatgaaaagcagt 57
             |||||||||||||||||||
Sbjct: 40327 atagaatatgaaaagcagt 40309
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>gb|AC122444.4| Mus musculus BAC clone RP24-232I9 from 9, complete sequence
          Length = 184253

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 39     atagaatatgaaaagcagt 57
              |||||||||||||||||||
Sbjct: 131476 atagaatatgaaaagcagt 131458
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>gb|AC139185.5| Mus musculus BAC clone RP24-91B1 from 6, complete sequence
          Length = 191289

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 39    atagaatatgaaaagcagt 57
             |||||||||||||||||||
Sbjct: 75234 atagaatatgaaaagcagt 75252
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>gb|DP000023.1| Didelphis virginiana target 1 genomic scaffold
          Length = 1751794

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 77      ttccaaaagaaagtttgca 95
               |||||||||||||||||||
Sbjct: 1381870 ttccaaaagaaagtttgca 1381888
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>gb|DP000021.1| Monodelphis domestica target 1 genomic scaffold
          Length = 1833844

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 77      ttccaaaagaaagtttgca 95
               |||||||||||||||||||
Sbjct: 1515548 ttccaaaagaaagtttgca 1515566
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>gb|AC156790.2| Mus musculus BAC clone RP24-359N3 from chromosome 14, complete sequence
          Length = 233946

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 39     atagaatatgaaaagcagt 57
              |||||||||||||||||||
Sbjct: 211578 atagaatatgaaaagcagt 211596
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>gb|AC110196.9| Mus musculus chromosome 15, clone RP24-343E7, complete sequence
          Length = 154367

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 39     atagaatatgaaaagcagt 57
              |||||||||||||||||||
Sbjct: 104715 atagaatatgaaaagcagt 104733
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>emb|AL806532.10| Mouse DNA sequence from clone RP23-387D16 on chromosome X, complete
             sequence
          Length = 209714

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 39    atagaatatgaaaagcagt 57
             |||||||||||||||||||
Sbjct: 82044 atagaatatgaaaagcagt 82026
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>emb|AL592422.11| Mouse DNA sequence from clone RP23-218O16 on chromosome 11, complete
             sequence
          Length = 205668

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 39    atagaatatgaaaagcagt 57
             |||||||||||||||||||
Sbjct: 69542 atagaatatgaaaagcagt 69524
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>gb|AC163216.10| Mus musculus chromosome 1, clone RP23-69G5, complete sequence
          Length = 260188

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 39     atagaatatgaaaagcagt 57
              |||||||||||||||||||
Sbjct: 257950 atagaatatgaaaagcagt 257968
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>emb|AL732603.3| Mouse DNA sequence from clone RP23-154H8 on chromosome 2, complete
             sequence
          Length = 87251

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 39    atagaatatgaaaagcagt 57
             |||||||||||||||||||
Sbjct: 54994 atagaatatgaaaagcagt 55012
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>emb|AL669955.6| Mouse DNA sequence from clone RP23-188F1 on chromosome 4, complete
              sequence
          Length = 114881

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 39     atagaatatgaaaagcagt 57
              |||||||||||||||||||
Sbjct: 108629 atagaatatgaaaagcagt 108647


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,986,490
Number of Sequences: 3902068
Number of extensions: 1986490
Number of successful extensions: 162525
Number of sequences better than 10.0: 69
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 162160
Number of HSP's gapped (non-prelim): 365
length of query: 199
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 177
effective length of database: 17,147,199,772
effective search space: 3035054359644
effective search space used: 3035054359644
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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