ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet119g06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AJ004857.1|HVAJ4857 Hordeum vulgare mRNA for hypothetical pr... 735 0.0
2gb|AY805122.1| Zea mays clone 5Zm6R25 putative protein kinase-li... 186 4e-44
3ref|NM_189334.1| Oryza sativa (japonica cultivar-group), predic... 153 5e-34
4dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 153 5e-34
5dbj|AP003238.4| Oryza sativa (japonica cultivar-group) genomic D... 153 5e-34
6dbj|AP004326.3| Oryza sativa (japonica cultivar-group) genomic D... 153 5e-34
7dbj|AK107370.1| Oryza sativa (japonica cultivar-group) cDNA clon... 153 5e-34
8ref|XM_800357.1| Trypanosoma cruzi strain CL Brener hypothetical... 44 0.35
9ref|XM_807986.1| Trypanosoma cruzi strain CL Brener hypothetical... 44 0.35
10emb|CT009662.23| Mouse DNA sequence from clone CH29-511O15 on ch... 44 0.35
11gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence 42 1.4
12ref|XM_473044.1| Oryza sativa (japonica cultivar-group), predic... 42 1.4
13emb|BX640439.1| Bordetella bronchiseptica strain RB50, complete ... 42 1.4
14dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
15gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 42 1.4
16dbj|AK107880.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.4
17emb|AL606627.3|OSJN00052 Oryza sativa genomic DNA, chromosome 4,... 42 1.4
18gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome 40 5.4
19gb|AC116712.11| Mus musculus chromosome 1, clone RP23-105A17, co... 40 5.4
20gb|AC131719.5| Mus musculus BAC clone RP23-151H15 from chromosom... 40 5.4
21gb|AC166349.4| Mus musculus BAC clone RP24-192I21 from chromosom... 40 5.4
22emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete ... 40 5.4
23gb|AY157498.1| Synechococcus sp. PCC 7942 cosmid 4G8, complete s... 40 5.4
24emb|AJ005522.1|HAA005522 Hippopotamus amphibius gene for pancrea... 40 5.4
25gb|AE012058.1| Xanthomonas axonopodis pv. citri str. 306, secti... 40 5.4
26dbj|AP008231.1| Synechococcus elongatus PCC 6301 DNA, complete g... 40 5.4
27gb|AC159633.2| Mus musculus BAC clone RP24-159L15 from chromosom... 40 5.4
28gb|AC159021.2| Pan troglodytes BAC clone CH251-508C8 from chromo... 40 5.4
29gb|AC034228.6| Homo sapiens chromosome 5 clone CTD-2198K16, comp... 40 5.4
30gb|AC034216.5| Homo sapiens chromosome 5 clone CTD-2004C12, comp... 40 5.4
31dbj|AK050511.1| Mus musculus adult pancreas islet cells cDNA, RI... 40 5.4
32dbj|AK044834.1| Mus musculus 9.5 days embryo parthenogenote cDNA... 40 5.4
33gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete g... 40 5.4
34gb|AC157482.2| Pan troglodytes BAC clone CH251-366D6 from chromo... 40 5.4
35dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 40 5.4
36gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 40 5.4
37gb|AC004511.1|AC004511 Homo sapiens chromosome 5, P1 clone 792C1... 40 5.4
38gb|CP000100.1| Synechococcus elongatus PCC 7942, complete genome 40 5.4 
>emb|AJ004857.1|HVAJ4857 Hordeum vulgare mRNA for hypothetical protein
          Length = 1225

 Score =  735 bits (371), Expect = 0.0
 Identities = 390/398 (97%)
 Strand = Plus / Minus

                                                                        
Query: 1    attggaatttgtacatgtatatgtcccataactttattcgtgtcatttttccaaggacag 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1136 attggaatttgtacatgtatatgtcccataactttattcgtgtcatttttccaaggacag 1077

                                                                        
Query: 61   taattccatatgctattatgtacgtataatactagtgttcaggagtcgtcagttcctggt 120
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1076 taattccatatgctattatgtacgtataatactagtgttcaggagtcatcagttcctggt 1017

                                                                        
Query: 121  aggcttggcctgcaccttgatgtgcatggtggagttgtagtgcaccacctcgggccgcac 180
            |  |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1016 anacttggcctgcaccttgatgtgcatggtgganttgtagtgcaccacctcgggccgcac 957

                                                                        
Query: 181  cgtctgcatcgagaacacctccgactgcaggtagcaggacccgtcgccggcgtcgcggcc 240
            |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 956  cgtctgcatcganaacacctccgactgcaggtagcaggacccgtcgccggcgtcgcggcc 897

                                                                        
Query: 241  gtagtagaactgcgccgccgcgcacgcgcagtcgtccaggcacgccctcttgcacgcctc 300
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 896  gtagtaaaactgcgccgccgcgcacgcgcagtcgtccaggcacgccctcttgcacgcctc 837

                                                                        
Query: 301  ctcgctcacccgctccatcgcccgcatgctcgttgtgtggtcgttgaagtacgccgtgct 360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 836  ctcgctcacccgctccatcgcccgcatgctcgttgtgtggtcgttgaagtacgccgtgct 777

                                                  
Query: 361  cgccagcgacaccagccggtgctgcgcgcgcggccgcc 398
            |||||||||||| | |||||||||||||||||||||||
Sbjct: 776  cgccagcgacacnanccggtgctgcgcgcgcggccgcc 739



 Score =  115 bits (58), Expect = 1e-22
 Identities = 68/70 (97%), Gaps = 1/70 (1%)
 Strand = Plus / Minus

                                                                        
Query: 23   gtcccataactttattcgtgtcatttttccaagg-acagtaattccatatgctattatgt 81
            |||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1205 gtcccataacttcattcgtgtcatttttccaagggacagtaattccatatgctattatgt 1146

                      
Query: 82   acgtataata 91
            ||||||||||
Sbjct: 1145 acgtataata 1136
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>gb|AY805122.1| Zea mays clone 5Zm6R25 putative protein kinase-like protein mRNA,
           partial cds
          Length = 239

 Score =  186 bits (94), Expect = 4e-44
 Identities = 172/198 (86%)
 Strand = Plus / Minus

                                                                       
Query: 126 tggcctgcaccttgatgtgcatggtggagttgtagtgcaccacctcgggccgcaccgtct 185
           ||||| |||||||||  ||||||||||||||||||||||||||||| ||| ||  |||||
Sbjct: 198 tggcccgcaccttgagatgcatggtggagttgtagtgcaccacctccggctgcgacgtct 139

                                                                       
Query: 186 gcatcgagaacacctccgactgcaggtagcaggacccgtcgccggcgtcgcggccgtagt 245
            || ||| | |||||||||||||||||||||| | || ||||||||||||  ||||||| 
Sbjct: 138 ccagcgacagcacctccgactgcaggtagcagaagccatcgccggcgtcggtgccgtaga 79

                                                                       
Query: 246 agaactgcgccgccgcgcacgcgcagtcgtccaggcacgccctcttgcacgcctcctcgc 305
            |||||||||||||||||| ||||||||||||||||||||| || |||||||  | ||||
Sbjct: 78  cgaactgcgccgccgcgcaggcgcagtcgtccaggcacgccttcctgcacgcggcgtcgc 19

                             
Query: 306 tcacccgctccatcgccc 323
           |||||| ||||| |||||
Sbjct: 18  tcaccctctccagcgccc 1
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>ref|NM_189334.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1410

 Score =  153 bits (77), Expect = 5e-34
 Identities = 214/257 (83%), Gaps = 2/257 (0%)
 Strand = Plus / Minus

                                                                        
Query: 136  cttgatgtgcatggtggagttgtagtgcaccacctcgggccgcaccgtctgcatcgagaa 195
            |||||| ||||||| |||||||||||| | |||||| ||| ||| ||||| || ||| ||
Sbjct: 1359 cttgatatgcatggaggagttgtagtgaaacacctccggctgcatcgtctccagcgacaa 1300

                                                                        
Query: 196  cacctccgactgcaggtagcaggacccgtcgccggcgtcgcggccgtagtagaactgcgc 255
            |||||||||||||||||||||| | ||||||  || ||||   |||||   |||||||||
Sbjct: 1299 cacctccgactgcaggtagcagaagccgtcgttggggtcgaatccgtacacgaactgcgc 1240

                                                                        
Query: 256  cgccgcgcacgcgcagtcgtccaggcacgccctcttgcacgcctcctcgctcacccgctc 315
            ||||  ||||||||||||| ||| ||||||   |||||||||| |||||| ||||| |||
Sbjct: 1239 cgccatgcacgcgcagtcgcccaagcacgctgccttgcacgccgcctcgcccaccctctc 1180

                                                                        
Query: 316  catcgcccgcatgctcgttgtgtggtcgttgaagtacgccgtgctcgc-cagcgacacca 374
            || || ||||||||| ||   ||||  ||||||||| |||||| |||| |||||||||||
Sbjct: 1179 cagcgtccgcatgctggtgtcgtggctgttgaagtaggccgtg-tcgcgcagcgacacca 1121

                             
Query: 375  gccggtgctgcgcgcgc 391
            |||||||| ||||||||
Sbjct: 1120 gccggtgccgcgcgcgc 1104
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  153 bits (77), Expect = 5e-34
 Identities = 214/257 (83%), Gaps = 2/257 (0%)
 Strand = Plus / Minus

                                                                            
Query: 136      cttgatgtgcatggtggagttgtagtgcaccacctcgggccgcaccgtctgcatcgagaa 195
                |||||| ||||||| |||||||||||| | |||||| ||| ||| ||||| || ||| ||
Sbjct: 42232582 cttgatatgcatggaggagttgtagtgaaacacctccggctgcatcgtctccagcgacaa 42232523

                                                                            
Query: 196      cacctccgactgcaggtagcaggacccgtcgccggcgtcgcggccgtagtagaactgcgc 255
                |||||||||||||||||||||| | ||||||  || ||||   |||||   |||||||||
Sbjct: 42232522 cacctccgactgcaggtagcagaagccgtcgttggggtcgaatccgtacacgaactgcgc 42232463

                                                                            
Query: 256      cgccgcgcacgcgcagtcgtccaggcacgccctcttgcacgcctcctcgctcacccgctc 315
                ||||  ||||||||||||| ||| ||||||   |||||||||| |||||| ||||| |||
Sbjct: 42232462 cgccatgcacgcgcagtcgcccaagcacgctgccttgcacgccgcctcgcccaccctctc 42232403

                                                                            
Query: 316      catcgcccgcatgctcgttgtgtggtcgttgaagtacgccgtgctcgc-cagcgacacca 374
                || || ||||||||| ||   ||||  ||||||||| |||||| |||| |||||||||||
Sbjct: 42232402 cagcgtccgcatgctggtgtcgtggctgttgaagtaggccgtg-tcgcgcagcgacacca 42232344

                                 
Query: 375      gccggtgctgcgcgcgc 391
                |||||||| ||||||||
Sbjct: 42232343 gccggtgccgcgcgcgc 42232327
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>dbj|AP003238.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
            clone:P0401G10
          Length = 160704

 Score =  153 bits (77), Expect = 5e-34
 Identities = 214/257 (83%), Gaps = 2/257 (0%)
 Strand = Plus / Minus

                                                                        
Query: 136  cttgatgtgcatggtggagttgtagtgcaccacctcgggccgcaccgtctgcatcgagaa 195
            |||||| ||||||| |||||||||||| | |||||| ||| ||| ||||| || ||| ||
Sbjct: 4539 cttgatatgcatggaggagttgtagtgaaacacctccggctgcatcgtctccagcgacaa 4480

                                                                        
Query: 196  cacctccgactgcaggtagcaggacccgtcgccggcgtcgcggccgtagtagaactgcgc 255
            |||||||||||||||||||||| | ||||||  || ||||   |||||   |||||||||
Sbjct: 4479 cacctccgactgcaggtagcagaagccgtcgttggggtcgaatccgtacacgaactgcgc 4420

                                                                        
Query: 256  cgccgcgcacgcgcagtcgtccaggcacgccctcttgcacgcctcctcgctcacccgctc 315
            ||||  ||||||||||||| ||| ||||||   |||||||||| |||||| ||||| |||
Sbjct: 4419 cgccatgcacgcgcagtcgcccaagcacgctgccttgcacgccgcctcgcccaccctctc 4360

                                                                        
Query: 316  catcgcccgcatgctcgttgtgtggtcgttgaagtacgccgtgctcgc-cagcgacacca 374
            || || ||||||||| ||   ||||  ||||||||| |||||| |||| |||||||||||
Sbjct: 4359 cagcgtccgcatgctggtgtcgtggctgttgaagtaggccgtg-tcgcgcagcgacacca 4301

                             
Query: 375  gccggtgctgcgcgcgc 391
            |||||||| ||||||||
Sbjct: 4300 gccggtgccgcgcgcgc 4284
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>dbj|AP004326.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:OJ1294_F06
          Length = 121088

 Score =  153 bits (77), Expect = 5e-34
 Identities = 214/257 (83%), Gaps = 2/257 (0%)
 Strand = Plus / Minus

                                                                          
Query: 136    cttgatgtgcatggtggagttgtagtgcaccacctcgggccgcaccgtctgcatcgagaa 195
              |||||| ||||||| |||||||||||| | |||||| ||| ||| ||||| || ||| ||
Sbjct: 105780 cttgatatgcatggaggagttgtagtgaaacacctccggctgcatcgtctccagcgacaa 105721

                                                                          
Query: 196    cacctccgactgcaggtagcaggacccgtcgccggcgtcgcggccgtagtagaactgcgc 255
              |||||||||||||||||||||| | ||||||  || ||||   |||||   |||||||||
Sbjct: 105720 cacctccgactgcaggtagcagaagccgtcgttggggtcgaatccgtacacgaactgcgc 105661

                                                                          
Query: 256    cgccgcgcacgcgcagtcgtccaggcacgccctcttgcacgcctcctcgctcacccgctc 315
              ||||  ||||||||||||| ||| ||||||   |||||||||| |||||| ||||| |||
Sbjct: 105660 cgccatgcacgcgcagtcgcccaagcacgctgccttgcacgccgcctcgcccaccctctc 105601

                                                                          
Query: 316    catcgcccgcatgctcgttgtgtggtcgttgaagtacgccgtgctcgc-cagcgacacca 374
              || || ||||||||| ||   ||||  ||||||||| |||||| |||| |||||||||||
Sbjct: 105600 cagcgtccgcatgctggtgtcgtggctgttgaagtaggccgtg-tcgcgcagcgacacca 105542

                               
Query: 375    gccggtgctgcgcgcgc 391
              |||||||| ||||||||
Sbjct: 105541 gccggtgccgcgcgcgc 105525
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>dbj|AK107370.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-127-B03, full
            insert sequence
          Length = 1610

 Score =  153 bits (77), Expect = 5e-34
 Identities = 214/257 (83%), Gaps = 2/257 (0%)
 Strand = Plus / Minus

                                                                        
Query: 136  cttgatgtgcatggtggagttgtagtgcaccacctcgggccgcaccgtctgcatcgagaa 195
            |||||| ||||||| |||||||||||| | |||||| ||| ||| ||||| || ||| ||
Sbjct: 1414 cttgatatgcatggaggagttgtagtgaaacacctccggctgcatcgtctccagcgacaa 1355

                                                                        
Query: 196  cacctccgactgcaggtagcaggacccgtcgccggcgtcgcggccgtagtagaactgcgc 255
            |||||||||||||||||||||| | ||||||  || ||||   |||||   |||||||||
Sbjct: 1354 cacctccgactgcaggtagcagaagccgtcgttggggtcgaatccgtacacgaactgcgc 1295

                                                                        
Query: 256  cgccgcgcacgcgcagtcgtccaggcacgccctcttgcacgcctcctcgctcacccgctc 315
            ||||  ||||||||||||| ||| ||||||   |||||||||| |||||| ||||| |||
Sbjct: 1294 cgccatgcacgcgcagtcgcccaagcacgctgccttgcacgccgcctcgcccaccctctc 1235

                                                                        
Query: 316  catcgcccgcatgctcgttgtgtggtcgttgaagtacgccgtgctcgc-cagcgacacca 374
            || || ||||||||| ||   ||||  ||||||||| |||||| |||| |||||||||||
Sbjct: 1234 cagcgtccgcatgctggtgtcgtggctgttgaagtaggccgtg-tcgcgcagcgacacca 1176

                             
Query: 375  gccggtgctgcgcgcgc 391
            |||||||| ||||||||
Sbjct: 1175 gccggtgccgcgcgcgc 1159
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>ref|XM_800357.1| Trypanosoma cruzi strain CL Brener hypothetical protein
            (Tc00.1047053503639.30) partial mRNA
          Length = 2274

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 283  cgccctcttgcacgcctcctcgctca 308
            ||||||||| ||||||||||||||||
Sbjct: 1413 cgccctcttccacgcctcctcgctca 1388
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>ref|XM_807986.1| Trypanosoma cruzi strain CL Brener hypothetical protein
            (Tc00.1047053507609.80) partial mRNA
          Length = 2274

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 283  cgccctcttgcacgcctcctcgctca 308
            ||||||||| ||||||||||||||||
Sbjct: 1413 cgccctcttccacgcctcctcgctca 1388
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>emb|CT009662.23| Mouse DNA sequence from clone CH29-511O15 on chromosome 17, complete
             sequence
          Length = 231197

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 252   gcgccgccgcgcacgcgcagtc 273
             ||||||||||||||||||||||
Sbjct: 29522 gcgccgccgcgcacgcgcagtc 29501
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>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence
          Length = 3587082

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 256     cgccgcgcacgcgcagtcgtc 276
               |||||||||||||||||||||
Sbjct: 2014248 cgccgcgcacgcgcagtcgtc 2014268
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>ref|XM_473044.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1200

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 221 ccgtcgccggcgtcgcggccg 241
           |||||||||||||||||||||
Sbjct: 437 ccgtcgccggcgtcgcggccg 457
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>emb|BX640439.1| Bordetella bronchiseptica strain RB50, complete genome; segment 3/16
          Length = 346362

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 224   tcgccggcgtcgcggccgtag 244
             |||||||||||||||||||||
Sbjct: 76644 tcgccggcgtcgcggccgtag 76624
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 221      ccgtcgccggcgtcgcggccg 241
                |||||||||||||||||||||
Sbjct: 24874531 ccgtcgccggcgtcgcggccg 24874551
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 384     gcgcgcgcggccgccccggcg 404
               |||||||||||||||||||||
Sbjct: 2918506 gcgcgcgcggccgccccggcg 2918486



 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 384     gcgcgcgcggccgccccggc 403
               ||||||||||||||||||||
Sbjct: 4229761 gcgcgcgcggccgccccggc 4229780



 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 385    cgcgcgcggccgccccggcg 404
              ||||||||||||||||||||
Sbjct: 305845 cgcgcgcggccgccccggcg 305864
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>dbj|AK107880.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-134-D05, full
           insert sequence
          Length = 513

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 221 ccgtcgccggcgtcgcggccg 241
           |||||||||||||||||||||
Sbjct: 160 ccgtcgccggcgtcgcggccg 180
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>emb|AL606627.3|OSJN00052 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0067K08,
              complete sequence
          Length = 170765

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 221    ccgtcgccggcgtcgcggccg 241
              |||||||||||||||||||||
Sbjct: 136247 ccgtcgccggcgtcgcggccg 136267
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>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome
          Length = 4109442

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 361     cgccagcgacaccagccggt 380
               ||||||||||||||||||||
Sbjct: 4085644 cgccagcgacaccagccggt 4085625
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>gb|AC116712.11| Mus musculus chromosome 1, clone RP23-105A17, complete sequence
          Length = 179782

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 85    tataatactagtgttcagga 104
             ||||||||||||||||||||
Sbjct: 60979 tataatactagtgttcagga 60960
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>gb|AC131719.5| Mus musculus BAC clone RP23-151H15 from chromosome 19, complete sequence
          Length = 216902

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 255    ccgccgcgcacgcgcagtcg 274
              ||||||||||||||||||||
Sbjct: 113816 ccgccgcgcacgcgcagtcg 113835
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>gb|AC166349.4| Mus musculus BAC clone RP24-192I21 from chromosome 12, complete sequence
          Length = 168529

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 1      attggaatttgtacatgtatatgt 24
              |||| |||||||||||||||||||
Sbjct: 131126 attgcaatttgtacatgtatatgt 131103
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>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome
          Length = 5178466

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 375     gccggtgctgcgcgcgcggccgcc 398
               |||||||| |||||||||||||||
Sbjct: 4795674 gccggtgccgcgcgcgcggccgcc 4795651
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>gb|AY157498.1| Synechococcus sp. PCC 7942 cosmid 4G8, complete sequence
          Length = 31404

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 366   gcgacaccagccggtgctgc 385
             ||||||||||||||||||||
Sbjct: 12009 gcgacaccagccggtgctgc 12028
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>emb|AJ005522.1|HAA005522 Hippopotamus amphibius gene for pancreatic ribonuclease
          Length = 348

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 138 tgatgtgcatggtggagttg 157
           ||||||||||||||||||||
Sbjct: 244 tgatgtgcatggtggagttg 225
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>gb|AE012058.1| Xanthomonas axonopodis pv. citri str. 306,  section 436 of 469 of the
            complete genome
          Length = 10525

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 375  gccggtgctgcgcgcgcggccgcc 398
            |||||||| |||||||||||||||
Sbjct: 5249 gccggtgcagcgcgcgcggccgcc 5226
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>dbj|AP008231.1| Synechococcus elongatus PCC 6301 DNA, complete genome
          Length = 2696255

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 366     gcgacaccagccggtgctgc 385
               ||||||||||||||||||||
Sbjct: 2416439 gcgacaccagccggtgctgc 2416458
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>gb|AC159633.2| Mus musculus BAC clone RP24-159L15 from chromosome 12, complete
             sequence
          Length = 188757

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 1     attggaatttgtacatgtatatgt 24
             |||| |||||||||||||||||||
Sbjct: 33594 attgcaatttgtacatgtatatgt 33571
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>gb|AC159021.2| Pan troglodytes BAC clone CH251-508C8 from chromosome unknown, complete
              sequence
          Length = 240827

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 138    tgatgtgcatggtggagttg 157
              ||||||||||||||||||||
Sbjct: 142010 tgatgtgcatggtggagttg 142029
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>gb|AC034228.6| Homo sapiens chromosome 5 clone CTD-2198K16, complete sequence
          Length = 183378

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 138  tgatgtgcatggtggagttg 157
            ||||||||||||||||||||
Sbjct: 9598 tgatgtgcatggtggagttg 9579
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>gb|AC034216.5| Homo sapiens chromosome 5 clone CTD-2004C12, complete sequence
          Length = 178405

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 138   tgatgtgcatggtggagttg 157
             ||||||||||||||||||||
Sbjct: 72808 tgatgtgcatggtggagttg 72789
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>dbj|AK050511.1| Mus musculus adult pancreas islet cells cDNA, RIKEN full-length
            enriched library, clone:C820005J08 product:tyrosine
            3-monooxygenase/tryptophan 5-monooxygenase activation
            protein, zeta polypeptide, full insert sequence
          Length = 3278

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 85   tataatactagtgttcagga 104
            ||||||||||||||||||||
Sbjct: 1412 tataatactagtgttcagga 1393
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>dbj|AK044834.1| Mus musculus 9.5 days embryo parthenogenote cDNA, RIKEN full-length
            enriched library, clone:B130007B22
            product:unclassifiable, full insert sequence
          Length = 3154

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 1    attggaatttgtacatgtatatgt 24
            |||| |||||||||||||||||||
Sbjct: 2770 attgcaatttgtacatgtatatgt 2747
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>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome
          Length = 2909809

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 252     gcgccgccgcgcacgcgcag 271
               ||||||||||||||||||||
Sbjct: 2170552 gcgccgccgcgcacgcgcag 2170533
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>gb|AC157482.2| Pan troglodytes BAC clone CH251-366D6 from chromosome unknown, complete
              sequence
          Length = 168325

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 138    tgatgtgcatggtggagttg 157
              ||||||||||||||||||||
Sbjct: 144384 tgatgtgcatggtggagttg 144365
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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 379     gtgctgcgcgcgcggccgccccgg 402
               |||||||||||||||||| |||||
Sbjct: 4064575 gtgctgcgcgcgcggccggcccgg 4064552
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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 162     gcaccacctcgggccgcacc 181
               ||||||||||||||||||||
Sbjct: 2418982 gcaccacctcgggccgcacc 2419001
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>gb|AC004511.1|AC004511 Homo sapiens chromosome 5, P1 clone 792C12 (LBNL H22), complete
             sequence
          Length = 45005

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 138   tgatgtgcatggtggagttg 157
             ||||||||||||||||||||
Sbjct: 12645 tgatgtgcatggtggagttg 12664
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>gb|CP000100.1| Synechococcus elongatus PCC 7942, complete genome
          Length = 2695903

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 366     gcgacaccagccggtgctgc 385
               ||||||||||||||||||||
Sbjct: 1900611 gcgacaccagccggtgctgc 1900592


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,656,970
Number of Sequences: 3902068
Number of extensions: 2656970
Number of successful extensions: 66233
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 64817
Number of HSP's gapped (non-prelim): 1410
length of query: 406
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 384
effective length of database: 17,147,199,772
effective search space: 6584524712448
effective search space used: 6584524712448
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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