ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet119f02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1KSR1_MOUSE (Q61097) Kinase suppressor of ras-1 (Kinase suppresso... 30 3.7
2RCNA_ECOL6 (Q8FFX9) Nickel/cobalt efflux system rcnA 29 6.3
3CY561_PIG (Q95245) Cytochrome b561 (Cytochrome b-561) 29 6.3

>KSR1_MOUSE (Q61097) Kinase suppressor of ras-1 (Kinase suppressor of ras)|
           (mKSR1) (Hb protein)
          Length = 873

 Score = 29.6 bits (65), Expect = 3.7
 Identities = 17/57 (29%), Positives = 32/57 (56%)
 Frame = -2

Query: 186 FIIPYHVFQYLQNEFGITVMTVTGQWVSVFFLTQVCNICVILCSKKLLCMNHARIKC 16
           F +P+   Q ++ + G++V   T ++ +  +L+QVCN+C       + C  H R+KC
Sbjct: 314 FELPHGSPQLVRRDIGLSV---THRFSTKSWLSQVCNVCQKSMIFGVKC-KHCRLKC 366



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>RCNA_ECOL6 (Q8FFX9) Nickel/cobalt efflux system rcnA|
          Length = 274

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = +2

Query: 119 VTVITVIPNSFCKYWKTW*GMIKGQTNRACGDHK*QRHSA*NHGD 253
           ++ + +I  +F  +W+TW G      N    DH+   H   +H D
Sbjct: 93  ISAVIIISTAFWMFWRTWRGERNWLENMHEHDHEHHHHDHEDHHD 137



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>CY561_PIG (Q95245) Cytochrome b561 (Cytochrome b-561)|
          Length = 252

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -2

Query: 213 SPHARLVWPFIIPYHV-FQYLQNEFGITVMTVTGQWVSVF 97
           SP  R   P  +PY+V F  L    G+TV+ VTG W+  +
Sbjct: 3   SPAGRTPAPGALPYYVAFSQL---LGLTVVAVTGAWLGAY 39


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,543,647
Number of Sequences: 219361
Number of extensions: 793471
Number of successful extensions: 2565
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2565
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2793557952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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