ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet119e12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1FUCO2_ARATH (Q9FXE5) Alpha-L-fucosidase 2 precursor (EC 3.2.1.51... 47 2e-05
2EST_HEVBR (Q7Y1X1) Esterase precursor (EC 3.1.1.-) (Early nodule... 41 8e-04
3APG_ARATH (P40602) Anter-specific proline-rich protein APG precu... 40 0.001
4GUNX_CLOTM (P15329) Putative endoglucanase X (EC 3.2.1.4) (EGX) ... 34 0.079
5DED1_DEBHA (Q6BU54) ATP-dependent RNA helicase DED1 (EC 3.6.1.-) 30 1.9
6LGB3_MEDSA (P14962) Leghemoglobin-3 (Leghemoglobin III) 29 3.3
7P53_CANFA (Q29537) Cellular tumor antigen p53 (Tumor suppressor ... 29 3.3
8KIF17_MOUSE (Q99PW8) Kinesin-like protein KIF17 (MmKIF17) 28 4.3
9LGB2_MEDTR (P27993) Leghemoglobin 2 28 5.6
10TRPE_AERPE (Q9Y8T0) Anthranilate synthase component 1 (EC 4.1.3.... 28 5.6
11LGB1_PEA (P02233) Leghemoglobin-1 (Leghemoglobin I) 28 5.6
12TAI12_MOUSE (Q8BGQ2) TGF-beta-induced apoptosis protein 12 (TAIP... 28 5.6
13DRE2D_ARATH (Q9LQZ2) Putative dehydration-responsive element-bin... 28 7.4
14CAC1A_RAT (P54282) Voltage-dependent P/Q-type calcium channel al... 28 7.4
15CAC1A_MOUSE (P97445) Voltage-dependent P/Q-type calcium channel ... 28 7.4
16CAC1A_HUMAN (O00555) Voltage-dependent P/Q-type calcium channel ... 28 7.4
17APG_BRANA (P40603) Anter-specific proline-rich protein APG (Prot... 27 9.6

>FUCO2_ARATH (Q9FXE5) Alpha-L-fucosidase 2 precursor (EC 3.2.1.51)|
           (Alpha-L-fucoside fucohydrolase 2)
           (Alpha-1,2-fucosidase) (AtFXG1)
          Length = 372

 Score = 46.6 bits (109), Expect = 2e-05
 Identities = 22/53 (41%), Positives = 26/53 (49%), Gaps = 9/53 (16%)
 Frame = -3

Query: 331 GGKYNYQNGARCGMSG---------ASACGNPSSSLSWDGIHLTEAAYKKIAD 200
           GGKYNY  G  CGM              C  P  ++ WDG+H T+AA K I D
Sbjct: 307 GGKYNYNKGIGCGMKKIVKGKEVYIGKPCDEPDKAVVWDGVHFTQAANKFIFD 359



to top

>EST_HEVBR (Q7Y1X1) Esterase precursor (EC 3.1.1.-) (Early nodule-specific|
           protein homolog) (Latex allergen Hev b 13)
          Length = 391

 Score = 40.8 bits (94), Expect = 8e-04
 Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 9/65 (13%)
 Frame = -3

Query: 331 GGKYNYQNGARCGMSGAS---------ACGNPSSSLSWDGIHLTEAAYKKIADGWVNGPY 179
           GGKYN+   A CG +  +         +C  PS  ++WDG H TEAA +   D    G +
Sbjct: 309 GGKYNFSVTAPCGDTVTADDGTKIVVGSCACPSVRVNWDGAHYTEAANEYFFDQISTGAF 368

Query: 178 CHPAI 164
             P +
Sbjct: 369 SDPPV 373



to top

>APG_ARATH (P40602) Anter-specific proline-rich protein APG precursor|
          Length = 534

 Score = 40.0 bits (92), Expect = 0.001
 Identities = 18/34 (52%), Positives = 21/34 (61%)
 Frame = -3

Query: 307 GARCGMSGASACGNPSSSLSWDGIHLTEAAYKKI 206
           GA C  S +  C N SS L WDG+H T+ AYK I
Sbjct: 487 GALCKKSTSKICPNTSSYLFWDGVHPTQRAYKTI 520



to top

>GUNX_CLOTM (P15329) Putative endoglucanase X (EC 3.2.1.4) (EGX)|
           (Endo-1,4-beta-glucanase) (Cellulase) (Fragment)
          Length = 224

 Score = 34.3 bits (77), Expect = 0.079
 Identities = 12/23 (52%), Positives = 18/23 (78%)
 Frame = -3

Query: 262 SSSLSWDGIHLTEAAYKKIADGW 194
           ++ +SWDG+HL+E  Y KIA+ W
Sbjct: 111 NTDISWDGLHLSEIGYTKIANIW 133



to top

>DED1_DEBHA (Q6BU54) ATP-dependent RNA helicase DED1 (EC 3.6.1.-)|
          Length = 630

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
 Frame = -3

Query: 337 AGGGKYNYQNGARCGMSG----ASACGNPSSSLSW 245
           +GGG  +  NG   G SG    +S+ GNPS+S SW
Sbjct: 595 SGGGWGSSNNGGYSGYSGRSNGSSSYGNPSASNSW 629



to top

>LGB3_MEDSA (P14962) Leghemoglobin-3 (Leghemoglobin III)|
          Length = 146

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = -2

Query: 173 PGHSVLVLVLVLERAPASGCSSVSFLEAGEGRGGSP 66
           PG+SVL   ++LE+APA+     SFL+   G   SP
Sbjct: 22  PGNSVLFYTIILEKAPAAK-GMFSFLKDSAGVQDSP 56



to top

>P53_CANFA (Q29537) Cellular tumor antigen p53 (Tumor suppressor p53)|
          Length = 381

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 14/45 (31%), Positives = 19/45 (42%)
 Frame = +3

Query: 207 IFLYAASVRWMPSQLSDDDGLPHADAPDMPHRAPFW*LYLPPPAP 341
           + L  + V W+     D   +P   AP  P  AP W L    P+P
Sbjct: 43  LLLPESVVNWLDEDSDDAPRMPATSAPTAPGPAPSWPLSSSVPSP 87



to top

>KIF17_MOUSE (Q99PW8) Kinesin-like protein KIF17 (MmKIF17)|
          Length = 1038

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +3

Query: 192  TQPSAIFLYAASVRWMPSQLSDDDGLPHADAPDMPHRAPF 311
            T P     Y  S   + S LS++  LP    P+MP   PF
Sbjct: 973  TDPMKSLTYHNSPPGLNSSLSNNSALPPTQTPEMPQPRPF 1012



to top

>LGB2_MEDTR (P27993) Leghemoglobin 2|
          Length = 146

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = -2

Query: 173 PGHSVLVLVLVLERAPASGCSSVSFLEAGEGRGGSP 66
           PG+SVL   ++LE+APA+     SFL+   G   SP
Sbjct: 22  PGNSVLFYTIILEKAPAAK-GMFSFLKDTAGVQDSP 56



to top

>TRPE_AERPE (Q9Y8T0) Anthranilate synthase component 1 (EC 4.1.3.27)|
           (Anthranilate synthase component I)
          Length = 438

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 11/14 (78%), Positives = 13/14 (92%)
 Frame = +1

Query: 67  GDPPLPSPASRKET 108
           GD PLP+PASRKE+
Sbjct: 145 GDTPLPAPASRKES 158



to top

>LGB1_PEA (P02233) Leghemoglobin-1 (Leghemoglobin I)|
          Length = 147

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = -2

Query: 173 PGHSVLVLVLVLERAPASGCSSVSFLEAGEGRGGSP 66
           PG+S+L   +VLE+APA+     SFL+   G   SP
Sbjct: 21  PGYSILFYTIVLEKAPAAK-GLFSFLKDTAGVEDSP 55



to top

>TAI12_MOUSE (Q8BGQ2) TGF-beta-induced apoptosis protein 12 (TAIP-12)|
          Length = 534

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = -2

Query: 188 RAVLPPGHSVLVLVLVLERAPASGCSSVSFLEAG 87
           +A LPPG SVL      E   AS  SS S+L +G
Sbjct: 374 QAQLPPGSSVLCFTENSEHPAASPMSSPSYLNSG 407



to top

>DRE2D_ARATH (Q9LQZ2) Putative dehydration-responsive element-binding protein 2D|
           (DREB2D protein)
          Length = 206

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = -3

Query: 331 GGKYNYQNGARCGMSGASACGNPSSSLSWDGIHL 230
           GGK +  + + C  +  S+CG  +  +SW+ I++
Sbjct: 122 GGKSSSDSESPCSSNEMSSCGRVTEEISWEHINV 155



to top

>CAC1A_RAT (P54282) Voltage-dependent P/Q-type calcium channel alpha-1A subunit|
            (Voltage-gated calcium channel alpha subunit Cav2.1)
            (Calcium channel, L type, alpha-1 polypeptide, isoform 4)
            (Brain calcium channel I) (BI) (RAT brain class A)
            (RBA-I)
          Length = 2212

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +1

Query: 52   VNKNNGDPPLPSPASRKETEEQPDAG 129
            VNKN    PLP     K+ EE+ D G
Sbjct: 1137 VNKNANPDPLPKKEEEKKEEEEADPG 1162



to top

>CAC1A_MOUSE (P97445) Voltage-dependent P/Q-type calcium channel alpha-1A subunit|
            (Voltage-gated calcium channel alpha subunit Cav2.1)
            (Calcium channel, L type, alpha-1 polypeptide isoform 4)
            (Brain calcium channel I) (BI)
          Length = 2164

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +1

Query: 52   VNKNNGDPPLPSPASRKETEEQPDAG 129
            VNKN    PLP     K+ EE+ D G
Sbjct: 1089 VNKNANPDPLPKKEEEKKEEEEADPG 1114



to top

>CAC1A_HUMAN (O00555) Voltage-dependent P/Q-type calcium channel alpha-1A subunit|
            (Voltage-gated calcium channel alpha subunit Cav2.1)
            (Calcium channel, L type, alpha-1 polypeptide isoform 4)
            (Brain calcium channel I) (BI)
          Length = 2505

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +1

Query: 52   VNKNNGDPPLPSPASRKETEEQPDAG 129
            VNKN    PLP     K+ EE+ D G
Sbjct: 1186 VNKNANPDPLPKKEEEKKEEEEDDRG 1211



to top

>APG_BRANA (P40603) Anter-specific proline-rich protein APG (Protein CEX)|
           (Fragment)
          Length = 449

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -3

Query: 313 QNGARCGMSGASACGNPSSSLSWDGIHLTEAAYK 212
           + G  C         N SS L WDG+H ++ AY+
Sbjct: 402 KGGVFCKERTLKNMSNASSYLFWDGLHPSQRAYE 435


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.305    0.125    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,277,494
Number of Sequences: 219361
Number of extensions: 789172
Number of successful extensions: 1465
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1461
length of database: 80,573,946
effective HSP length: 89
effective length of database: 61,050,817
effective search space used: 1465219608
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
to top