ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet119e09 |
|---|---|
| Clone Library Name | barley_pub |
>MTNN_TREPA (P96122) MTA/SAH nucleosidase (EC 3.2.2.9) (5'-methylthioadenosine| nucleosidase) (S-adenosylhomocysteine nucleosidase) Length = 269 Score = 36.6 bits (83), Expect = 0.023 Identities = 24/76 (31%), Positives = 34/76 (44%) Frame = -2 Query: 414 AEYRQFLRKQFGCTPVEMESAAVALVAHTQGVPFLTIRXXXXXXXXXXXXGNEASTFIDI 235 A+ R + ++FG VEME AA A VA GVPF+ IR F Sbjct: 177 AQTRARIIREFGAHGVEMEGAAFAHVASVNGVPFVIIRCISDGAGAEQDVSMSYKEFSTR 236 Query: 234 AAKNAVQVMLKFVPLL 187 AA+ + + L+ + L Sbjct: 237 AARRSALLTLRVLERL 252
>MTNN_HELPY (O24915) MTA/SAH nucleosidase (EC 3.2.2.9) (5'-methylthioadenosine| nucleosidase) (S-adenosylhomocysteine nucleosidase) Length = 231 Score = 34.7 bits (78), Expect = 0.089 Identities = 22/72 (30%), Positives = 32/72 (44%) Frame = -2 Query: 411 EYRQFLRKQFGCTPVEMESAAVALVAHTQGVPFLTIRXXXXXXXXXXXXGNEASTFIDIA 232 E ++FL +F + VEME A+VA V GVP +R EA+ D Sbjct: 159 ERKEFLVSEFKASAVEMEGASVAFVCQKFGVPCCVLR------SISDNADEEANMSFDAF 212 Query: 231 AKNAVQVMLKFV 196 + + Q KF+ Sbjct: 213 LEKSAQTSAKFL 224
>MTNN_MYCTU (P67656) MTA/SAH nucleosidase (EC 3.2.2.9) (5'-methylthioadenosine| nucleosidase) (S-adenosylhomocysteine nucleosidase) Length = 255 Score = 33.5 bits (75), Expect = 0.20 Identities = 20/73 (27%), Positives = 35/73 (47%) Frame = -2 Query: 405 RQFLRKQFGCTPVEMESAAVALVAHTQGVPFLTIRXXXXXXXXXXXXGNEASTFIDIAAK 226 R L + G VEME AVA + + +P+L IR + + F+ A Sbjct: 182 RNRLHHELGGMAVEMEGGAVAQICASFDIPWLVIRALSDLAGADSGV--DFNRFVGEVAA 239 Query: 225 NAVQVMLKFVPLL 187 ++ +V+L+ +P+L Sbjct: 240 SSARVLLRLLPVL 252
>MTNN_MYCBO (P67657) MTA/SAH nucleosidase (EC 3.2.2.9) (5'-methylthioadenosine| nucleosidase) (S-adenosylhomocysteine nucleosidase) Length = 255 Score = 33.5 bits (75), Expect = 0.20 Identities = 20/73 (27%), Positives = 35/73 (47%) Frame = -2 Query: 405 RQFLRKQFGCTPVEMESAAVALVAHTQGVPFLTIRXXXXXXXXXXXXGNEASTFIDIAAK 226 R L + G VEME AVA + + +P+L IR + + F+ A Sbjct: 182 RNRLHHELGGMAVEMEGGAVAQICASFDIPWLVIRALSDLAGADSGV--DFNRFVGEVAA 239 Query: 225 NAVQVMLKFVPLL 187 ++ +V+L+ +P+L Sbjct: 240 SSARVLLRLLPVL 252
>MTNN_HELPJ (Q9ZMY2) MTA/SAH nucleosidase (EC 3.2.2.9) (5'-methylthioadenosine| nucleosidase) (S-adenosylhomocysteine nucleosidase) Length = 230 Score = 32.7 bits (73), Expect = 0.34 Identities = 16/37 (43%), Positives = 22/37 (59%) Frame = -2 Query: 411 EYRQFLRKQFGCTPVEMESAAVALVAHTQGVPFLTIR 301 E ++FL +F + VEME A+VA V GVP +R Sbjct: 158 ERKEFLVSEFKASAVEMEGASVAFVCQKFGVPCCVLR 194
>MTNN_BACSU (O32028) MTA/SAH nucleosidase (EC 3.2.2.9) (5'-methylthioadenosine| nucleosidase) (S-adenosylhomocysteine nucleosidase) Length = 231 Score = 31.6 bits (70), Expect = 0.76 Identities = 19/58 (32%), Positives = 30/58 (51%) Frame = -2 Query: 369 VEMESAAVALVAHTQGVPFLTIRXXXXXXXXXXXXGNEASTFIDIAAKNAVQVMLKFV 196 VEME+AAVA V H PF+ IR + F++ AA ++ +++LK + Sbjct: 172 VEMEAAAVAQVCHQFKTPFVVIRALSDIAGKESHVSFD--QFLEQAAVHSTELVLKVI 227
>MTNN_HAEIN (P45113) MTA/SAH nucleosidase (EC 3.2.2.9) (5'-methylthioadenosine| nucleosidase) (S-adenosylhomocysteine nucleosidase) Length = 229 Score = 31.2 bits (69), Expect = 0.99 Identities = 19/63 (30%), Positives = 30/63 (47%) Frame = -2 Query: 375 TPVEMESAAVALVAHTQGVPFLTIRXXXXXXXXXXXXGNEASTFIDIAAKNAVQVMLKFV 196 T VEME+ A+A V + VPF+ +R E F+ +AAK + ++L + Sbjct: 169 TGVEMEATAIAQVCYAFNVPFVVVRAISDGGDGKASMSFE--EFLPLAAKQSSALVLGMI 226 Query: 195 PLL 187 L Sbjct: 227 DRL 229
>PCBG_PROMT (Q46JW4) Divinyl chlorophyll a/b light-harvesting protein pcbG| Length = 354 Score = 30.0 bits (66), Expect = 2.2 Identities = 15/45 (33%), Positives = 24/45 (53%) Frame = +1 Query: 121 SGCWLTSNVRGRAVVHLLGALPEQRHELEHDLDGVLGGDVNEGAG 255 +G W +NV A+VH++ +L L H L + GD+ +G G Sbjct: 80 AGVWTGANVASVAIVHIIASLVYAGGALSHSL--LFDGDLADGPG 122
>PINK1_HUMAN (Q9BXM7) Serine/threonine-protein kinase PINK1, mitochondrial| precursor (EC 2.7.11.1) (PTEN-induced putative kinase protein 1) (BRPK) Length = 581 Score = 29.6 bits (65), Expect = 2.9 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 3/37 (8%) Frame = +1 Query: 235 DVNEGAGLVPERG---ASPGEVGERADGEERHPLRVR 336 +V + GL+P RG ++PGE ERA G PL ++ Sbjct: 183 EVTKSTGLLPGRGPGTSAPGEGQERAPGAPAFPLAIK 219
>MTNN_SALTY (P60217) MTA/SAH nucleosidase (EC 3.2.2.9) (P46)| (5'-methylthioadenosine nucleosidase) (S-adenosylhomocysteine nucleosidase) Length = 232 Score = 29.3 bits (64), Expect = 3.7 Identities = 18/61 (29%), Positives = 28/61 (45%) Frame = -2 Query: 369 VEMESAAVALVAHTQGVPFLTIRXXXXXXXXXXXXGNEASTFIDIAAKNAVQVMLKFVPL 190 VEME+ A+A V H VPF+ +R + F+ +AAK + ++ V Sbjct: 171 VEMEATAIAHVCHNFNVPFVVVRAISDVADQQSHLSFD--EFLAVAAKQSTLMVETLVQK 228 Query: 189 L 187 L Sbjct: 229 L 229
>MTNN_SALTI (P60216) MTA/SAH nucleosidase (EC 3.2.2.9) (P46)| (5'-methylthioadenosine nucleosidase) (S-adenosylhomocysteine nucleosidase) Length = 232 Score = 29.3 bits (64), Expect = 3.7 Identities = 18/61 (29%), Positives = 28/61 (45%) Frame = -2 Query: 369 VEMESAAVALVAHTQGVPFLTIRXXXXXXXXXXXXGNEASTFIDIAAKNAVQVMLKFVPL 190 VEME+ A+A V H VPF+ +R + F+ +AAK + ++ V Sbjct: 171 VEMEATAIAHVCHNFNVPFVVVRAISDVADQQSHLSFD--EFLAVAAKQSTLMVETLVQK 228 Query: 189 L 187 L Sbjct: 229 L 229
>MTNN_SHIFL (P0AF15) MTA/SAH nucleosidase (EC 3.2.2.9) (P46)| (5'-methylthioadenosine nucleosidase) (S-adenosylhomocysteine nucleosidase) Length = 232 Score = 28.9 bits (63), Expect = 4.9 Identities = 12/23 (52%), Positives = 16/23 (69%) Frame = -2 Query: 369 VEMESAAVALVAHTQGVPFLTIR 301 VEME+ A+A V H VPF+ +R Sbjct: 171 VEMEATAIAHVCHNFNVPFVVVR 193
>MTNN_ECOLI (P0AF12) MTA/SAH nucleosidase (EC 3.2.2.9) (P46)| (5'-methylthioadenosine nucleosidase) (S-adenosylhomocysteine nucleosidase) Length = 232 Score = 28.9 bits (63), Expect = 4.9 Identities = 12/23 (52%), Positives = 16/23 (69%) Frame = -2 Query: 369 VEMESAAVALVAHTQGVPFLTIR 301 VEME+ A+A V H VPF+ +R Sbjct: 171 VEMEATAIAHVCHNFNVPFVVVR 193
>MTNN_ECOL6 (P0AF13) MTA/SAH nucleosidase (EC 3.2.2.9) (P46)| (5'-methylthioadenosine nucleosidase) (S-adenosylhomocysteine nucleosidase) Length = 232 Score = 28.9 bits (63), Expect = 4.9 Identities = 12/23 (52%), Positives = 16/23 (69%) Frame = -2 Query: 369 VEMESAAVALVAHTQGVPFLTIR 301 VEME+ A+A V H VPF+ +R Sbjct: 171 VEMEATAIAHVCHNFNVPFVVVR 193
>MTNN_ECO57 (P0AF14) MTA/SAH nucleosidase (EC 3.2.2.9) (P46)| (5'-methylthioadenosine nucleosidase) (S-adenosylhomocysteine nucleosidase) Length = 232 Score = 28.9 bits (63), Expect = 4.9 Identities = 12/23 (52%), Positives = 16/23 (69%) Frame = -2 Query: 369 VEMESAAVALVAHTQGVPFLTIR 301 VEME+ A+A V H VPF+ +R Sbjct: 171 VEMEATAIAHVCHNFNVPFVVVR 193
>ARGD_XYLFT (Q87DM8) Acetylornithine aminotransferase (EC 2.6.1.11) (ACOAT)| Length = 411 Score = 28.9 bits (63), Expect = 4.9 Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 6/40 (15%) Frame = -2 Query: 258 EASTFIDIAAKNAVQVM------LKFVPLLGKSAEEMDDG 157 +AS +++AA++ V ++ L+FVP L S EE+ DG Sbjct: 355 QASAILEVAAEHGVLLLQAGPDVLRFVPALNVSDEELADG 394
>YCP1_STRLI (P49322) Hypothetical protein in cpoL 5'region (ORF1) (Fragment)| Length = 141 Score = 28.5 bits (62), Expect = 6.4 Identities = 17/45 (37%), Positives = 24/45 (53%) Frame = +1 Query: 169 LLGALPEQRHELEHDLDGVLGGDVNEGAGLVPERGASPGEVGERA 303 L+ A + R HD V+GGD G+ + P GA+ E+ ERA Sbjct: 57 LVPADTDARAAAAHDTLVVVGGDALPGSPVGPVLGAAAKELAERA 101
>PPNK_SYMTH (Q67NC1) Probable inorganic polyphosphate/ATP-NAD kinase (EC| 2.7.1.23) (Poly(P)/ATP NAD kinase) Length = 283 Score = 28.5 bits (62), Expect = 6.4 Identities = 17/35 (48%), Positives = 19/35 (54%) Frame = +1 Query: 223 VLGGDVNEGAGLVPERGASPGEVGERADGEERHPL 327 V+G DV L ASPGEVG ADG + PL Sbjct: 217 VVGADV----ALAIRVAASPGEVGLSADGSDPFPL 247
>DEOD_CLOTE (Q894Z3) Purine nucleoside phosphorylase deoD-type (EC 2.4.2.1)| (PNP) Length = 235 Score = 28.5 bits (62), Expect = 6.4 Identities = 13/28 (46%), Positives = 19/28 (67%) Frame = -2 Query: 387 QFGCTPVEMESAAVALVAHTQGVPFLTI 304 ++GC VEME+AA+ +A GV LT+ Sbjct: 172 KYGCLGVEMETAALYTIAAKYGVNALTL 199
>Y2830_COREF (Q8FLN8) UPF0176 protein CE2830| Length = 312 Score = 28.1 bits (61), Expect = 8.3 Identities = 14/60 (23%), Positives = 27/60 (45%) Frame = +1 Query: 106 IRAWTSGCWLTSNVRGRAVVHLLGALPEQRHELEHDLDGVLGGDVNEGAGLVPERGASPG 285 ++ W + N+RGR ++ EH ++G +GGD+N+ + + PG Sbjct: 21 VQLWQRDLCESLNLRGRILIS------------EHGINGTVGGDINDCKAYIRKTREYPG 68
>Y1516_MYCBO (P64854) Hypothetical protein Mb1516| Length = 317 Score = 28.1 bits (61), Expect = 8.3 Identities = 17/40 (42%), Positives = 21/40 (52%) Frame = +1 Query: 169 LLGALPEQRHELEHDLDGVLGGDVNEGAGLVPERGASPGE 288 L AL ++ LDGVL GD GL+P G+ PGE Sbjct: 25 LAAALRTLELTVKQKLDGVLHGD---HLGLIPGPGSEPGE 61
>Y1480_MYCTU (P64853) Hypothetical protein Rv1480/MT1527| Length = 317 Score = 28.1 bits (61), Expect = 8.3 Identities = 17/40 (42%), Positives = 21/40 (52%) Frame = +1 Query: 169 LLGALPEQRHELEHDLDGVLGGDVNEGAGLVPERGASPGE 288 L AL ++ LDGVL GD GL+P G+ PGE Sbjct: 25 LAAALRTLELTVKQKLDGVLHGD---HLGLIPGPGSEPGE 61 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 42,952,903 Number of Sequences: 219361 Number of extensions: 687440 Number of successful extensions: 2275 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 2231 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2275 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 2169600302 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
