ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet119e08 |
|---|---|
| Clone Library Name | barley_pub |
>RNS1_ARATH (P42813) Ribonuclease 1 precursor (EC 3.1.27.1)| Length = 230 Score = 58.9 bits (141), Expect = 6e-09 Identities = 25/63 (39%), Positives = 36/63 (57%) Frame = -1 Query: 465 EHIKWAVNQKLGVMPGVQCKDGPFGKKQLYQIYLCVDKDGKTFIDCPKLPKLRCPEEVLF 286 E I+ ++ + +G P V+C G QLYQ+YLCVD+ G I+CP P +C E+ F Sbjct: 168 ESIRDSIKESIGFTPWVECNRDGSGNSQLYQVYLCVDRSGSGLIECPVFPHGKCGAEIEF 227 Query: 285 HPF 277 F Sbjct: 228 PSF 230
>RNS3_ARATH (P42815) Ribonuclease 3 precursor (EC 3.1.27.1)| Length = 222 Score = 57.8 bits (138), Expect = 1e-08 Identities = 26/61 (42%), Positives = 33/61 (54%) Frame = -1 Query: 459 IKWAVNQKLGVMPGVQCKDGPFGKKQLYQIYLCVDKDGKTFIDCPKLPKLRCPEEVLFHP 280 I+ + Q +G PG++C QLYQIYLCVD FI+CP +P RC V F Sbjct: 162 IENTIKQVVGFAPGIECNKDSSHNSQLYQIYLCVDTSASKFINCPVMPHGRCDSRVQFPK 221 Query: 279 F 277 F Sbjct: 222 F 222
>RNLE_LYCES (P80022) Extracellular ribonuclease LE precursor (EC 3.1.27.1)| (RNase LE) Length = 230 Score = 54.7 bits (130), Expect = 1e-07 Identities = 23/62 (37%), Positives = 34/62 (54%) Frame = -1 Query: 462 HIKWAVNQKLGVMPGVQCKDGPFGKKQLYQIYLCVDKDGKTFIDCPKLPKLRCPEEVLFH 283 +I+ A+ +G P +QC G QLYQ+Y+CVD G + I+CP P +C + F Sbjct: 169 NIRNAIKSAIGYTPWIQCNVDQSGNSQLYQVYICVDGSGSSLIECPIFPGGKCGTSIEFP 228 Query: 282 PF 277 F Sbjct: 229 TF 230
>RNLX_LYCES (P80196) Intracellular ribonuclease LX precursor (EC 3.1.27.1)| (RNase LX) Length = 237 Score = 54.3 bits (129), Expect = 2e-07 Identities = 27/66 (40%), Positives = 36/66 (54%), Gaps = 1/66 (1%) Frame = -1 Query: 465 EHIKWAVNQKLGVMPGVQCKDGPFGKKQLYQIYLCVDKDGKTFIDCPKLPK-LRCPEEVL 289 E IK A+ + +G P ++C G QLYQ+YLCVD FIDCP P +C ++ Sbjct: 165 ESIKKAIEKGVGHTPFIECNVDSQGNHQLYQVYLCVDSSASKFIDCPIFPHGGKCGSKIE 224 Query: 288 FHPFHT 271 F F T Sbjct: 225 FPSFST 230
>RNDI_DICDI (Q7M438) Ribonuclease DdI precursor (EC 3.1.27.1) (RNase DdI)| Length = 223 Score = 40.0 bits (92), Expect = 0.003 Identities = 19/55 (34%), Positives = 27/55 (49%) Frame = -1 Query: 450 AVNQKLGVMPGVQCKDGPFGKKQLYQIYLCVDKDGKTFIDCPKLPKLRCPEEVLF 286 A+ G PG+QC G QL + +C+DK+ + +DCP L C V F Sbjct: 170 AITTHFGGKPGIQCSSG-----QLSTVAVCIDKNSLSIMDCPDLQGWSCSGSVKF 219
>RNMC_MOMCH (P23540) Ribonuclease MC (EC 3.1.27.1) (RNase MC)| Length = 191 Score = 37.4 bits (85), Expect = 0.020 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%) Frame = -1 Query: 459 IKWAVNQKLGVMPGVQCKDGPFGK-KQLYQIYLCVDKDGKTFIDCPK 322 IK + K G PG++C+ P K L Q+ C +DG T IDC + Sbjct: 136 IKGFLKAKFGKFPGLRCRTDPQTKVSYLVQVVACFAQDGSTLIDCTR 182
>RNS1_PYRPY (O80322) Ribonuclease S-1 precursor (EC 3.1.27.1) (S1-RNase)| Length = 228 Score = 33.5 bits (75), Expect = 0.29 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 4/50 (8%) Frame = -1 Query: 423 PGVQCKDGPFGKKQLYQIYLCVDKDGKTFIDCPKLP----KLRCPEEVLF 286 P +C+ +L ++ LC D+D K FI+CP P + CP V + Sbjct: 179 PKFKCQKNTRTTTELVEVTLCSDRDLKKFINCPHGPPQGSRFSCPSSVQY 228
>RNT2_PIG (Q7M329) Ribonuclease T2 (EC 3.1.27.-)| Length = 200 Score = 32.0 bits (71), Expect = 0.83 Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 2/62 (3%) Frame = -1 Query: 459 IKWAVNQKLGVMPGVQCKDGPFGKK--QLYQIYLCVDKDGKTFIDCPKLPKLRCPEEVLF 286 IK A+ GV+P VQC G+K L QI LC+ +D DCP+ C + +F Sbjct: 136 IKHALVGVYGVVPKVQCLPPKSGEKVQTLGQIELCLTRD-LQLQDCPEPGLEICEDGPVF 194 Query: 285 HP 280 +P Sbjct: 195 YP 196
>RNS5_PYRPY (P93460) Ribonuclease S-5 precursor (EC 3.1.27.1) (S5-RNase)| Length = 227 Score = 30.8 bits (68), Expect = 1.9 Identities = 12/20 (60%), Positives = 15/20 (75%) Frame = -1 Query: 384 QLYQIYLCVDKDGKTFIDCP 325 +L +I LC DK G+ FIDCP Sbjct: 190 ELVEITLCSDKSGEHFIDCP 209
>RNS3_PYRPY (O80323) Ribonuclease S-3 precursor (EC 3.1.27.1) (S3-RNase)| Length = 222 Score = 30.8 bits (68), Expect = 1.9 Identities = 12/20 (60%), Positives = 15/20 (75%) Frame = -1 Query: 384 QLYQIYLCVDKDGKTFIDCP 325 +L +I LC DK G+ FIDCP Sbjct: 185 ELVEITLCSDKSGEHFIDCP 204
>ESSC_STAAW (Q8NYF3) Protein essC| Length = 1479 Score = 30.8 bits (68), Expect = 1.9 Identities = 16/31 (51%), Positives = 18/31 (58%) Frame = -1 Query: 405 DGPFGKKQLYQIYLCVDKDGKTFIDCPKLPK 313 DGPF K LY I D KTFIDC +P+ Sbjct: 1367 DGPFEKDSLYII-----NDFKTFIDCTYIPE 1392
>ESSC_STAAS (Q6GCI5) Protein essC| Length = 1479 Score = 30.8 bits (68), Expect = 1.9 Identities = 16/31 (51%), Positives = 18/31 (58%) Frame = -1 Query: 405 DGPFGKKQLYQIYLCVDKDGKTFIDCPKLPK 313 DGPF K LY I D KTFIDC +P+ Sbjct: 1367 DGPFEKDSLYII-----NDFKTFIDCTYIPE 1392
>ESSC_STAAC (Q5HJ86) Protein essC| Length = 1479 Score = 30.8 bits (68), Expect = 1.9 Identities = 16/31 (51%), Positives = 18/31 (58%) Frame = -1 Query: 405 DGPFGKKQLYQIYLCVDKDGKTFIDCPKLPK 313 DGPF K LY I D KTFIDC +P+ Sbjct: 1367 DGPFEKDSLYII-----NDFKTFIDCTYIPE 1392
>YMT6_YEAST (Q04215) Transposon Ty1 protein A| Length = 440 Score = 30.4 bits (67), Expect = 2.4 Identities = 13/27 (48%), Positives = 17/27 (62%) Frame = -3 Query: 337 HRLPQAAQVALPRGGPLPSLPHLDAQR 257 H PQAAQV LP+ GP P ++ Q+ Sbjct: 69 HASPQAAQVPLPQNGPYPQQRMMNTQQ 95
>P3F2B_XENLA (P70030) POU domain, class 3, transcription factor 2-B| (Transcription factor POU3-B) (XLPOU3B) Length = 385 Score = 30.4 bits (67), Expect = 2.4 Identities = 22/74 (29%), Positives = 33/74 (44%) Frame = -3 Query: 352 GRQDLHRLPQAAQVALPRGGPLPSLPHLDAQRHIVRQDHLAHRGLRATRSAGASTETTCY 173 G+QD+ Q+++ L G +L H H+V H H G A RS G++ ++ Sbjct: 76 GQQDIKPTVQSSRDELHGSG---TLQHQSRAPHLVHPAHGNHHGPGAWRSTGSTHLSSMA 132 Query: 172 CGLNSGPLYCAMSF 131 G LY SF Sbjct: 133 SSNGQGLLYSQPSF 146
>P3F2A_XENLA (P31365) POU domain, class 3, transcription factor 2-A| (Transcription factor POU3-A) (XLPOU3) Length = 382 Score = 30.0 bits (66), Expect = 3.2 Identities = 22/74 (29%), Positives = 33/74 (44%) Frame = -3 Query: 352 GRQDLHRLPQAAQVALPRGGPLPSLPHLDAQRHIVRQDHLAHRGLRATRSAGASTETTCY 173 G+QD+ Q+++ L G +L H H+V H H G A RS G++ ++ Sbjct: 76 GQQDIKPTVQSSRDELHVSG---TLQHQSRAPHLVHPAHGNHHGPGAWRSTGSTHLSSMA 132 Query: 172 CGLNSGPLYCAMSF 131 G LY SF Sbjct: 133 SSNGQGLLYSQPSF 146
>RN28_PANGI (P83618) Ribonuclease-like storage protein precursor (Root 28 kDa| major protein) Length = 238 Score = 29.6 bits (65), Expect = 4.1 Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 8/66 (12%) Frame = -1 Query: 459 IKWAVNQKLGVMPGVQCKDGPFGKKQLYQIYLCVDKDGKTFIDCP--------KLPKLRC 304 IK A+ + L +P + + L I +CV++ F+DCP +L +R Sbjct: 164 IKEAIKKHLNAVPEIDFTKNENSEYVLTDINVCVNQQATRFVDCPTDDATDDYRLKFVRL 223 Query: 303 PEEVLF 286 P ++ F Sbjct: 224 PSKMKF 229
>SMAD1_MOUSE (P70340) Mothers against decapentaplegic homolog 1 (SMAD 1)| (Mothers against DPP homolog 1) (Mad-related protein 1) (Mothers-against-DPP-related-1) (mMad1) (Dwarfin-A) (Dwf-A) Length = 465 Score = 29.6 bits (65), Expect = 4.1 Identities = 20/96 (20%), Positives = 41/96 (42%), Gaps = 8/96 (8%) Frame = -1 Query: 456 KWAVNQKLGVMPGVQCKDGPFGKKQLYQIYLCVDKDGKTFIDCPKLPKLRCPEEVLFHPF 277 +W+ Q + ++C + PFG KQ +C++ ++ P LP + P+ ++P Sbjct: 93 RWSDLQSHHELKPLECCEFPFGSKQK---EVCINPYHYKRVESPVLPPVLVPKHSEYNPQ 149 Query: 276 HTWMLNATSSAK--------ITLPTEA*EPPARPVP 193 H+ + + + T P +P + P P Sbjct: 150 HSLLAQFRNLGQNEPHMPLNATFPDSFQQPNSHPFP 185
>VPS36_YEAST (Q06696) Vacuolar protein sorting protein 36| Length = 566 Score = 29.6 bits (65), Expect = 4.1 Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 2/53 (3%) Frame = -3 Query: 337 HRLPQAAQVA--LPRGGPLPSLPHLDAQRHIVRQDHLAHRGLRATRSAGASTE 185 HRLP A++V L R S H++ +++ + ++ +H L ++ S G+STE Sbjct: 202 HRLPNASKVRSKLNRLNFHDSRVHIELEKNSLARNKSSHSALSSSSSTGSSTE 254
>ESSC_STAAU (P0C048) Protein essC| Length = 1479 Score = 29.6 bits (65), Expect = 4.1 Identities = 15/31 (48%), Positives = 18/31 (58%) Frame = -1 Query: 405 DGPFGKKQLYQIYLCVDKDGKTFIDCPKLPK 313 DGPF K LY I D KT+IDC +P+ Sbjct: 1367 DGPFEKDSLYII-----NDFKTYIDCTYIPE 1392
>ESSC_STAAN (Q99WT9) Protein essC| Length = 1479 Score = 29.6 bits (65), Expect = 4.1 Identities = 15/31 (48%), Positives = 18/31 (58%) Frame = -1 Query: 405 DGPFGKKQLYQIYLCVDKDGKTFIDCPKLPK 313 DGPF K LY I D KT+IDC +P+ Sbjct: 1367 DGPFEKDSLYII-----NDFKTYIDCTYIPE 1392
>ESSC_STAAM (Q932J9) Protein essC| Length = 1479 Score = 29.6 bits (65), Expect = 4.1 Identities = 15/31 (48%), Positives = 18/31 (58%) Frame = -1 Query: 405 DGPFGKKQLYQIYLCVDKDGKTFIDCPKLPK 313 DGPF K LY I D KT+IDC +P+ Sbjct: 1367 DGPFEKDSLYII-----NDFKTYIDCTYIPE 1392
>CWC22_USTMA (Q4PCY0) Pre-mRNA-splicing factor CWC22| Length = 886 Score = 29.3 bits (64), Expect = 5.4 Identities = 14/25 (56%), Positives = 15/25 (60%) Frame = -1 Query: 252 SSAKITLPTEA*EPPARPVPQLKLP 178 SS +TLPT A P RP P L LP Sbjct: 679 SSKLLTLPTRARHAPTRPGPDLTLP 703
>NU6M_PETMA (Q35544) NADH-ubiquinone oxidoreductase chain 6 (EC 1.6.5.3) (NADH| dehydrogenase subunit 6) Length = 172 Score = 28.5 bits (62), Expect = 9.2 Identities = 11/27 (40%), Positives = 19/27 (70%) Frame = +1 Query: 34 LHVLFFTYILLGVPILLVTPNPYYFLL 114 L + FF LLGV +++++P+PY+ L Sbjct: 4 LVLCFFVMFLLGVAVVVLSPSPYFSAL 30
>KLF14_HUMAN (Q8TD94) Krueppel-like factor 14 (Transcription factor BTEB5)| (Basic transcription element-binding protein 5) (BTE-binding protein 5) Length = 323 Score = 28.5 bits (62), Expect = 9.2 Identities = 21/64 (32%), Positives = 27/64 (42%) Frame = -3 Query: 460 HQMGGEPEAGSNAGGAVQGRAVRQEAALPDLPLRRQGRQDLHRLPQAAQVALPRGGPLPS 281 H+ +PE A G+ G A E+ALP G +PQ QV P G + Sbjct: 26 HRRPPDPEGAGGAAGSEVG-AAHPESALPG-----PGPSGPASVPQLPQVPAPSPGAGGA 79 Query: 280 LPHL 269 PHL Sbjct: 80 APHL 83
>CH601_CORDI (Q6NJ37) 60 kDa chaperonin 1 (Protein Cpn60 1) (groEL protein 1)| Length = 539 Score = 28.5 bits (62), Expect = 9.2 Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 2/31 (6%) Frame = -1 Query: 276 HTWMLNATSSAKITLPTEA--*EPPARPVPQ 190 H+ ++NATS A++ L TEA E PA P P+ Sbjct: 500 HSAVVNATSVARMVLTTEASVVEKPAAPAPE 530
>R3HD1_HUMAN (Q15032) R3H domain-containing protein 1| Length = 1099 Score = 28.5 bits (62), Expect = 9.2 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 4/50 (8%) Frame = -3 Query: 328 PQAAQVALPRGGPLPSLPHLDAQRHIVRQDHL----AHRGLRATRSAGAS 191 P +QV P PLP+ P A HI QD+L +H L SA S Sbjct: 513 PVRSQVPGPPQPPLPAPPQQPAANHIFSQDNLGSQFSHMSLARQPSADGS 562 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 61,944,939 Number of Sequences: 219361 Number of extensions: 1220480 Number of successful extensions: 3596 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 3479 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3590 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3130907202 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
