ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet119e04 |
|---|---|
| Clone Library Name | barley_pub |
>IF2_NOCFA (Q5YSC6) Translation initiation factor IF-2| Length = 969 Score = 35.8 bits (81), Expect = 0.050 Identities = 27/71 (38%), Positives = 33/71 (46%), Gaps = 1/71 (1%) Frame = -1 Query: 439 PTARRSPWGARHGSRCTTATTSVGAGRWPCGVAEQTSSTARCRRSP-VKPGMAVWTWRCA 263 P A+ +P G R G R T A P AEQT+ R P VKPG A R A Sbjct: 71 PGAKPTPGGPRPGPR-----TPAPAASAPQAPAEQTARPTDARPGPAVKPGPAPTPARPA 125 Query: 262 SPRTPWAASSP 230 +P P A ++P Sbjct: 126 APEAPAAKAAP 136
>HCBT3_DIACA (O23918) Anthranilate N-benzoyltransferase protein 3 (EC 2.3.1.144)| (Anthranilate N-hydroxycinnamoyl/benzoyltransferase 3) Length = 445 Score = 31.6 bits (70), Expect = 0.95 Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 4/67 (5%) Frame = -3 Query: 449 LGNPDGAA---LTMGSSPRFPMYDGNDFGWGRAVAVRSGRANKF-DGKMSAFPGQAGDGS 282 +G+P+ + + S R P Y DFGWG G +N F DG+ P Q GDGS Sbjct: 367 MGSPEKTLYPNVLVNSWGRIP-YQAMDFGWGNPTFF--GISNIFYDGQCFLIPSQNGDGS 423 Query: 281 VDVEVCL 261 + + + L Sbjct: 424 MTLAINL 430
>HCBT2_DIACA (O23917) Anthranilate N-benzoyltransferase protein 2 (EC 2.3.1.144)| (Anthranilate N-hydroxycinnamoyl/benzoyltransferase 2) Length = 446 Score = 31.2 bits (69), Expect = 1.2 Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 4/67 (5%) Frame = -3 Query: 449 LGNPDGAA---LTMGSSPRFPMYDGNDFGWGRAVAVRSGRANKF-DGKMSAFPGQAGDGS 282 +G+P+ + + S R P Y DFGWG G +N F DG+ P Q GDGS Sbjct: 368 MGSPEKTLYPNVLVNSWGRIP-YQAMDFGWGSPTFF--GISNIFYDGQCFLIPSQNGDGS 424 Query: 281 VDVEVCL 261 + + + L Sbjct: 425 MTLAINL 431
>YLZ5_CAEEL (P34418) Hypothetical protein F42H10.5| Length = 810 Score = 30.8 bits (68), Expect = 1.6 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%) Frame = -3 Query: 428 ALTMGSSPRFPMYDGNDFGWGR--AVAVRSGRANK 330 AL + SP ++ G+D+ W R A ++RSG NK Sbjct: 18 ALAVAQSPAAQLFSGDDWSWHRNPAASIRSGGTNK 52
>TNKS1_HUMAN (O95271) Tankyrase 1 (EC 2.4.2.30) (TANK1) (Tankyrase I) (TNKS-1)| (TRF1-interacting ankyrin-related ADP-ribose polymerase) Length = 1327 Score = 30.4 bits (67), Expect = 2.1 Identities = 25/77 (32%), Positives = 33/77 (42%) Frame = -1 Query: 439 PTARRSPWGARHGSRCTTATTSVGAGRWPCGVAEQTSSTARCRRSPVKPGMAVWTWRCAS 260 P RSP S C+T +T P A TSS A +P G S Sbjct: 75 PDRPRSPDPVDGTSCCSTTSTICTVAAAPVVPAVSTSSAAGVAPNPAGSG---------S 125 Query: 259 PRTPWAASSPTTNSCSS 209 +P ++SSPT++S SS Sbjct: 126 NNSPSSSSSPTSSSSSS 142
>HCBT1_DIACA (O24645) Anthranilate N-benzoyltransferase protein 1 (EC 2.3.1.144)| (Anthranilate N-hydroxycinnamoyl/benzoyltransferase 1) Length = 445 Score = 30.4 bits (67), Expect = 2.1 Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 4/74 (5%) Frame = -3 Query: 449 LGNPDGAA---LTMGSSPRFPMYDGNDFGWGRAVAVRSGRANKF-DGKMSAFPGQAGDGS 282 +G+P+ + + S R P Y DFGWG G +N F DG+ P + GDGS Sbjct: 367 MGSPEKTLYPNVLVNSWGRIP-YQAMDFGWGSPTFF--GISNIFYDGQCFLIPSRDGDGS 423 Query: 281 VDVEVCLAPDTMGR 240 + + + L + R Sbjct: 424 MTLAINLFSSHLSR 437
>NIR_NEUCR (P38681) Nitrite reductase [NAD(P)H] (EC 1.7.1.4)| Length = 1176 Score = 30.4 bits (67), Expect = 2.1 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 5/60 (8%) Frame = -1 Query: 328 STARCRRSPVKPGMAVWTWRCASPRT-----PWAASSPTTNSCSSCHMHLDGVHRIWLSC 164 S + C S + P R +SP T P ++++P T + SSC + G W+SC Sbjct: 999 SPSSCSSSALPPSPPSTPPRSSSPVTSPPQSPTSSATPATTASSSCTTNPSGPASPWISC 1058
>ROBO4_RAT (Q80W87) Roundabout homolog 4 precursor| Length = 961 Score = 30.0 bits (66), Expect = 2.8 Identities = 24/94 (25%), Positives = 35/94 (37%), Gaps = 17/94 (18%) Frame = -1 Query: 442 TPTARR---------SPWGARHG-----SRCTTATTSVGAGRWPCGVAEQTSSTARCRRS 305 TP ARR SPW + C+ + A W A++ + S Sbjct: 612 TPAARRLPPKLTGTSSPWASSDSLCSRRGLCSPRMSLAPAEAWK---AKKKQELHQANSS 668 Query: 304 PVKPG---MAVWTWRCASPRTPWAASSPTTNSCS 212 P+ G M +W W S + + SP N+CS Sbjct: 669 PLLQGSHPMEIWAWELGSRASKNLSQSPGPNTCS 702
>DDHB_RHOSU (Q8GPG3) Dimethylsulfide dehydrogenase beta subunit| (Dimethylsulfide iron-sulfur subunit) (DMS DH beta subunit) (DMS DH iron-sulfur subunit) Length = 325 Score = 30.0 bits (66), Expect = 2.8 Identities = 8/18 (44%), Positives = 15/18 (83%) Frame = +2 Query: 284 CHPRLDRGTPTSCRRTCL 337 C+PR+++G PT+C + C+ Sbjct: 195 CYPRIEKGLPTACAKQCV 212
>Y801_DEIRA (Q9RW68) Putative carotenoid cyclase DR0801| Length = 410 Score = 29.6 bits (65), Expect = 3.6 Identities = 16/30 (53%), Positives = 18/30 (60%), Gaps = 2/30 (6%) Frame = -1 Query: 361 RWPCGVAEQTSS--TARCRRSPVKPGMAVW 278 R+P G A QT+ AR RR PV PG VW Sbjct: 150 RFPGGAALQTAYGVVARFRRPPVTPGSMVW 179
>UBP4_HUMAN (Q13107) Ubiquitin carboxyl-terminal hydrolase 4 (EC 3.1.2.15)| (Ubiquitin thioesterase 4) (Ubiquitin-specific-processing protease 4) (Deubiquitinating enzyme 4) (Ubiquitous nuclear protein homolog) Length = 963 Score = 29.6 bits (65), Expect = 3.6 Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 1/63 (1%) Frame = -1 Query: 364 GRWPCGVAEQTSSTARCRRSPVKPGMAVWTWRCASPRTPWAAS-SPTTNSCSSCHMHLDG 188 G WP + SSTA R P + ASP + +AS +S S+C MH G Sbjct: 222 GTWPRQTLQSKSSTAPSRNFTTSPKSS------ASPYSSVSASLIANGDSTSTCGMHSSG 275 Query: 187 VHR 179 V R Sbjct: 276 VSR 278
>NARH_SHIFL (Q83RN5) Respiratory nitrate reductase 1 beta chain (EC 1.7.99.4)| Length = 512 Score = 29.3 bits (64), Expect = 4.7 Identities = 9/18 (50%), Positives = 13/18 (72%) Frame = +2 Query: 284 CHPRLDRGTPTSCRRTCL 337 C+PR++ G PT C TC+ Sbjct: 247 CYPRIEAGQPTVCSETCV 264
>NARH_ECOLI (P11349) Respiratory nitrate reductase 1 beta chain (EC 1.7.99.4)| (Nitrate reductase A beta subunit) (Quinol-nitrate oxidoreductase beta subunit) Length = 512 Score = 29.3 bits (64), Expect = 4.7 Identities = 9/18 (50%), Positives = 13/18 (72%) Frame = +2 Query: 284 CHPRLDRGTPTSCRRTCL 337 C+PR++ G PT C TC+ Sbjct: 247 CYPRIEAGQPTVCSETCV 264
>NIFE_AZOVI (P08293) Nitrogenase iron-molybdenum cofactor biosynthesis protein| nifE Length = 474 Score = 29.3 bits (64), Expect = 4.7 Identities = 14/39 (35%), Positives = 18/39 (46%) Frame = +3 Query: 312 RHLAVELVCSATPHGHRPAPTEVVAVVHREPWRAPHGER 428 RH+ + L C RPAP ++ A P P GER Sbjct: 436 RHVCITLECPVWEAVRRPAPWDIPASQDARPSGGPFGER 474
>NARY_ECOLI (P19318) Respiratory nitrate reductase 2 beta chain (EC 1.7.99.4)| Length = 514 Score = 29.3 bits (64), Expect = 4.7 Identities = 9/18 (50%), Positives = 13/18 (72%) Frame = +2 Query: 284 CHPRLDRGTPTSCRRTCL 337 C+PR++ G PT C TC+ Sbjct: 246 CYPRIESGQPTVCSETCV 263
>VGLL1_HUMAN (Q99990) Transcription cofactor vestigial-like protein 1 (Vgl-1)| (TONDU protein) Length = 258 Score = 29.3 bits (64), Expect = 4.7 Identities = 11/29 (37%), Positives = 17/29 (58%) Frame = -1 Query: 274 WRCASPRTPWAASSPTTNSCSSCHMHLDG 188 WR +SP T P TN ++C++H+ G Sbjct: 80 WRYSSPWTKPQPEVPVTNRAANCNLHVPG 108
>HIPL1_ARATH (Q9SSG3) HIPL1 protein precursor| Length = 695 Score = 28.9 bits (63), Expect = 6.2 Identities = 12/25 (48%), Positives = 19/25 (76%) Frame = -1 Query: 256 RTPWAASSPTTNSCSSCHMHLDGVH 182 R P +SSP+++S SSC+ H++G H Sbjct: 653 RNPGTSSSPSSSS-SSCYKHINGFH 676
>NARH_BACSU (P42176) Nitrate reductase beta chain (EC 1.7.99.4)| Length = 487 Score = 28.9 bits (63), Expect = 6.2 Identities = 10/18 (55%), Positives = 12/18 (66%) Frame = +2 Query: 284 CHPRLDRGTPTSCRRTCL 337 C PRL+ G PT C TC+ Sbjct: 244 CFPRLEAGLPTICSETCV 261
>Y1289_MYCBO (P64786) Hypothetical protein Mb1289| Length = 268 Score = 28.5 bits (62), Expect = 8.1 Identities = 15/31 (48%), Positives = 19/31 (61%) Frame = -1 Query: 325 TARCRRSPVKPGMAVWTWRCASPRTPWAASS 233 T R RSPV+PG W A+P+TP AA + Sbjct: 5 TGRAFRSPVEPGSG-WPGDPATPQTPVAADA 34
>Y1259_MYCTU (P64785) Hypothetical protein Rv1259/MT1297.1| Length = 268 Score = 28.5 bits (62), Expect = 8.1 Identities = 15/31 (48%), Positives = 19/31 (61%) Frame = -1 Query: 325 TARCRRSPVKPGMAVWTWRCASPRTPWAASS 233 T R RSPV+PG W A+P+TP AA + Sbjct: 5 TGRAFRSPVEPGSG-WPGDPATPQTPVAADA 34
>GUNB_PSEFL (P18126) Endoglucanase B precursor (EC 3.2.1.4)| (Endo-1,4-beta-glucanase) (Cellulase) (EGB) Length = 511 Score = 28.5 bits (62), Expect = 8.1 Identities = 26/94 (27%), Positives = 40/94 (42%), Gaps = 10/94 (10%) Frame = -1 Query: 436 TARRSPWGARHGSRCTTATTSVGAGRWPCGVAEQTSSTARCRRSPVKP------GMAVWT 275 T+ +P + SR + A++S ++ TSS+A S V P G A Sbjct: 224 TSSSTPLSSSSSSRSSVASSS--------SLSSATSSSASSVSS-VPPIDGGCNGYATRY 274 Query: 274 WRCASPRTPWAASSPT----TNSCSSCHMHLDGV 185 W C P W+A+ P+ SCS+ + L V Sbjct: 275 WDCCKPHCGWSANVPSLVSPLQSCSANNTRLSDV 308
>PROA_LEPIN (P94872) Gamma-glutamyl phosphate reductase (GPR) (EC 1.2.1.41)| (Glutamate-5-semialdehyde dehydrogenase) (Glutamyl-gamma-semialdehyde dehydrogenase) (GSA dehydrogenase) Length = 416 Score = 28.5 bits (62), Expect = 8.1 Identities = 14/33 (42%), Positives = 20/33 (60%) Frame = -3 Query: 437 DGAALTMGSSPRFPMYDGNDFGWGRAVAVRSGR 339 D AAL + S RF +DG +FG G V + +G+ Sbjct: 359 DSAALFINCSTRF--HDGGEFGLGAEVGISTGK 389
>PROA_LEPIC (Q72NQ9) Gamma-glutamyl phosphate reductase (GPR) (EC 1.2.1.41)| (Glutamate-5-semialdehyde dehydrogenase) (Glutamyl-gamma-semialdehyde dehydrogenase) (GSA dehydrogenase) Length = 416 Score = 28.5 bits (62), Expect = 8.1 Identities = 14/33 (42%), Positives = 20/33 (60%) Frame = -3 Query: 437 DGAALTMGSSPRFPMYDGNDFGWGRAVAVRSGR 339 D AAL + S RF +DG +FG G V + +G+ Sbjct: 359 DSAALFINCSTRF--HDGGEFGLGAEVGISTGK 389 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 74,697,822 Number of Sequences: 219361 Number of extensions: 1628899 Number of successful extensions: 4922 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 4680 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4919 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2735358828 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
