ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet119d11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AB219525.1| Hordeum vulgare HvPIP2;4 mRNA for PIP aquaporin ... 767 0.0
2gb|BT018182.1| Zea mays clone EL01N0557H10.c mRNA sequence 86 1e-13
3gb|AY243802.1| Zea mays aquaporin (PIP2-5) mRNA, complete cds 86 1e-13
4gb|AF326494.1|AF326494 Zea mays plasma membrane integral protein... 86 1e-13
5gb|AF130975.1|AF130975 Zea mays plasma membrane intrinsic protei... 86 1e-13
6ref|XM_466869.1| Oryza sativa (japonica cultivar-group), mRNA 78 3e-11
7dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 78 3e-11
8gb|AF326493.1|AF326493 Zea mays plasma membrane integral protein... 78 3e-11
9gb|AF139815.1|AF139815 Triticum aestivum plasma membrane intrins... 78 3e-11
10dbj|AP006168.3| Oryza sativa (japonica cultivar-group) genomic D... 78 3e-11
11dbj|AK061782.1| Oryza sativa (japonica cultivar-group) cDNA clon... 78 3e-11
12gb|AY109332.1| Zea mays CL502_5 mRNA sequence 78 3e-11
13ref|XM_473219.1| Oryza sativa (japonica cultivar-group), predic... 76 1e-10
14dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 76 1e-10
15emb|AL662958.3|OSJN00156 Oryza sativa genomic DNA, chromosome 4,... 76 1e-10
16dbj|AB219366.1| Hordeum vulgare HvPIP2;1 mRNA for PIP aquaporin,... 62 2e-06
17dbj|AB009307.1| Hordeum vulgare HvPIP2;1 mRNA, complete cd 62 2e-06
18gb|AC116395.21| Mus musculus chromosome 14, clone RP23-106K9, co... 42 1.4
19emb|AL139041.17| Human DNA sequence from clone RP11-408O19 on ch... 42 1.4
20emb|BX004993.16| Zebrafish DNA sequence from clone CH211-163C2 i... 42 1.4
21emb|BX323881.7| Zebrafish DNA sequence from clone CH211-274G13 i... 42 1.4
22gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome 42 1.4
23emb|CT025527.7| Mouse DNA sequence from clone RP23-279J20 on chr... 40 5.5
24emb|Z82265.1|CEF02H6 Caenorhabditis elegans Cosmid F02H6, comple... 40 5.5
25tpg|BK003523.1| TPA: TPA_inf: Drosophila melanogaster HDC02994 (... 40 5.5
26gb|AC092643.2| Homo sapiens BAC clone RP11-393P9 from 4, complet... 40 5.5
27gb|AC160646.2| Gallus gallus BAC clone CH261-24P2 from chromosom... 40 5.5
28gb|AC009202.7| Drosophila melanogaster, chromosome 2L, region 36... 40 5.5
29gb|AF139814.1|AF139814 Triticum aestivum plasma membrane intrins... 40 5.5
30gb|AC115004.14| Mus musculus chromosome 3, clone RP24-182K13, co... 40 5.5
31gb|AC011662.1|AC011662 Drosophila melanogaster, chromosome 2L, r... 40 5.5
32gb|AE003656.2| Drosophila melanogaster chromosome 2L, section 65... 40 5.5
33emb|AL732627.14| Mouse DNA sequence from clone RP23-183L6 on chr... 40 5.5
34gb|AC164108.2| Mus musculus BAC clone RP24-96K15 from chromosome... 40 5.5 
>dbj|AB219525.1| Hordeum vulgare HvPIP2;4 mRNA for PIP aquaporin isoform, complete cds
          Length = 1343

 Score =  767 bits (387), Expect = 0.0
 Identities = 409/415 (98%), Gaps = 1/415 (0%)
 Strand = Plus / Minus

                                                                        
Query: 1    gctggtagggacgtatgcttgggagtaagaaacaagcaatcagctcacaaaccgaaccgt 60
            |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 1274 gctggtagggacgtatgcttgggagtaagaaacaagcaatcagctcacgaaccgaaccgt 1215

                                                                        
Query: 61   acgtacacattgcatttcaaatttcccccc-aagttacctggatgcgtacatgacatgac 119
            |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1214 acgtacacattgcatttcaaatttcccccccaagttacctggatgcgtacatgacatgac 1155

                                                                        
Query: 120  agtacatcatcctcatcattcataaacattacatggaagcaaacactgactgacgaagac 179
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1154 agtacatcatcctcatcattcataaacattacatggaagcaaacactgactgacgaagac 1095

                                                                        
Query: 180  acactcgatcggtagagaaaacaagcagcaagcgcgggcggcgagccgaggaaagcagag 239
            |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 1094 acactcgatcggtagagaaaacaagcagcaagcgcgggcggcgagcagaggaaagcagag 1035

                                                                        
Query: 240  gcgcgcgcaaagaccagcagaatccagggaccccaacggaggcccctctgtcctctgcca 299
             |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1034 acgcgcgcaaagaccagcagaatccagggacccgaacggaggcccctctgtcctctgcca 975

                                                                        
Query: 300  tatctacagttcatacgcctccgaccatctagcggctgccgaaggaggcagccgagccga 359
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 974  tatctacagttcatacgcctccgaccatctagcggctgccgaaggaggcagacgagccga 915

                                                                   
Query: 360  acttggtggcgctggccctcagcacgtactggtggtacaaggcggcgatggcggc 414
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 914  acttggtggcgctggccctcagcacgtactggtggtacaaggcggcgatggcggc 860
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>gb|BT018182.1| Zea mays clone EL01N0557H10.c mRNA sequence
          Length = 1215

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 55/59 (93%)
 Strand = Plus / Minus

                                                                      
Query: 356 ccgaacttggtggcgctggccctcagcacgtactggtggtacaaggcggcgatggcggc 414
           |||| ||||||||||||||||||||||||||||||||||||   |||||||||||||||
Sbjct: 940 ccgagcttggtggcgctggccctcagcacgtactggtggtaggcggcggcgatggcggc 882
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>gb|AY243802.1| Zea mays aquaporin (PIP2-5) mRNA, complete cds
          Length = 1104

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 67/75 (89%)
 Strand = Plus / Minus

                                                                       
Query: 340 gaaggaggcagccgagccgaacttggtggcgctggccctcagcacgtactggtggtacaa 399
           ||||||||||| ||| || | ||||| |||||||||||||||||||||||||||||||  
Sbjct: 852 gaaggaggcagacgatcccagcttggcggcgctggccctcagcacgtactggtggtacgc 793

                          
Query: 400 ggcggcgatggcggc 414
            ||||||||||||||
Sbjct: 792 cgcggcgatggcggc 778
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>gb|AF326494.1|AF326494 Zea mays plasma membrane integral protein ZmPIP2-4 mRNA, complete
           cds
          Length = 1171

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 55/59 (93%)
 Strand = Plus / Minus

                                                                      
Query: 356 ccgaacttggtggcgctggccctcagcacgtactggtggtacaaggcggcgatggcggc 414
           |||| ||||||||||||||||||||||||||||||||||||   |||||||||||||||
Sbjct: 932 ccgagcttggtggcgctggccctcagcacgtactggtggtaggcggcggcgatggcggc 874
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>gb|AF130975.1|AF130975 Zea mays plasma membrane intrinsic protein (pip2-5) mRNA, complete
           cds
          Length = 1207

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 67/75 (89%)
 Strand = Plus / Minus

                                                                       
Query: 340 gaaggaggcagccgagccgaacttggtggcgctggccctcagcacgtactggtggtacaa 399
           ||||||||||| ||| || | ||||| |||||||||||||||||||||||||||||||  
Sbjct: 907 gaaggaggcagacgatcccagcttggcggcgctggccctcagcacgtactggtggtacgc 848

                          
Query: 400 ggcggcgatggcggc 414
            ||||||||||||||
Sbjct: 847 cgcggcgatggcggc 833
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>ref|XM_466869.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1214

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 54/59 (91%)
 Strand = Plus / Minus

                                                                      
Query: 356 ccgaacttggtggcgctggccctcagcacgtactggtggtacaaggcggcgatggcggc 414
           |||| ||||| ||||||||||||||||||||||||||||||   |||||||||||||||
Sbjct: 912 ccgagcttggcggcgctggccctcagcacgtactggtggtaggcggcggcgatggcggc 854
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 54/59 (91%)
 Strand = Plus / Minus

                                                                           
Query: 356      ccgaacttggtggcgctggccctcagcacgtactggtggtacaaggcggcgatggcggc 414
                |||| ||||| ||||||||||||||||||||||||||||||   |||||||||||||||
Sbjct: 25184693 ccgagcttggcggcgctggccctcagcacgtactggtggtaggcggcggcgatggcggc 25184635
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>gb|AF326493.1|AF326493 Zea mays plasma membrane integral protein ZmPIP2-3 mRNA, complete
           cds
          Length = 1156

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 54/59 (91%)
 Strand = Plus / Minus

                                                                      
Query: 356 ccgaacttggtggcgctggccctcagcacgtactggtggtacaaggcggcgatggcggc 414
           |||| ||||||||||||||| ||||||||||||||||||||   |||||||||||||||
Sbjct: 922 ccgagcttggtggcgctggctctcagcacgtactggtggtaggcggcggcgatggcggc 864
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>gb|AF139815.1|AF139815 Triticum aestivum plasma membrane intrinsic protein 2 (PIP2) mRNA,
           complete cds
          Length = 1235

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 54/59 (91%)
 Strand = Plus / Minus

                                                                      
Query: 356 ccgaacttggtggcgctggccctcagcacgtactggtggtacaaggcggcgatggcggc 414
           |||| ||||| ||||||||||||||||||||||||||||||   |||||||||||||||
Sbjct: 886 ccgagcttggcggcgctggccctcagcacgtactggtggtaggcggcggcgatggcggc 828
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>dbj|AP006168.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:B1469H02
          Length = 136602

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 54/59 (91%)
 Strand = Plus / Minus

                                                                        
Query: 356   ccgaacttggtggcgctggccctcagcacgtactggtggtacaaggcggcgatggcggc 414
             |||| ||||| ||||||||||||||||||||||||||||||   |||||||||||||||
Sbjct: 85086 ccgagcttggcggcgctggccctcagcacgtactggtggtaggcggcggcgatggcggc 85028
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>dbj|AK061782.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-E03, full
           insert sequence
          Length = 1214

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 54/59 (91%)
 Strand = Plus / Minus

                                                                      
Query: 356 ccgaacttggtggcgctggccctcagcacgtactggtggtacaaggcggcgatggcggc 414
           |||| ||||| ||||||||||||||||||||||||||||||   |||||||||||||||
Sbjct: 912 ccgagcttggcggcgctggccctcagcacgtactggtggtaggcggcggcgatggcggc 854
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>gb|AY109332.1| Zea mays CL502_5 mRNA sequence
          Length = 1969

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 54/59 (91%)
 Strand = Plus / Minus

                                                                      
Query: 356 ccgaacttggtggcgctggccctcagcacgtactggtggtacaaggcggcgatggcggc 414
           |||| ||||||||||||||| ||||||||||||||||||||   |||||||||||||||
Sbjct: 350 ccgagcttggtggcgctggctctcagcacgtactggtggtaggcggcggcgatggcggc 292
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>ref|XM_473219.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 873

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 56/62 (90%)
 Strand = Plus / Minus

                                                                       
Query: 353 gagccgaacttggtggcgctggccctcagcacgtactggtggtacaaggcggcgatggcg 412
           ||||||| ||||| ||||||||||||||| ||||||||||||||   |||||||||||||
Sbjct: 851 gagccgagcttggcggcgctggccctcaggacgtactggtggtaggcggcggcgatggcg 792

             
Query: 413 gc 414
           ||
Sbjct: 791 gc 790
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 56/62 (90%)
 Strand = Plus / Minus

                                                                            
Query: 353      gagccgaacttggtggcgctggccctcagcacgtactggtggtacaaggcggcgatggcg 412
                ||||||| ||||| ||||||||||||||| ||||||||||||||   |||||||||||||
Sbjct: 26074843 gagccgagcttggcggcgctggccctcaggacgtactggtggtaggcggcggcgatggcg 26074784

                  
Query: 413      gc 414
                ||
Sbjct: 26074783 gc 26074782
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>emb|AL662958.3|OSJN00156 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0019D11,
              complete sequence
          Length = 163039

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 56/62 (90%)
 Strand = Plus / Minus

                                                                          
Query: 353    gagccgaacttggtggcgctggccctcagcacgtactggtggtacaaggcggcgatggcg 412
              ||||||| ||||| ||||||||||||||| ||||||||||||||   |||||||||||||
Sbjct: 109170 gagccgagcttggcggcgctggccctcaggacgtactggtggtaggcggcggcgatggcg 109111

                
Query: 413    gc 414
              ||
Sbjct: 109110 gc 109109
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>dbj|AB219366.1| Hordeum vulgare HvPIP2;1 mRNA for PIP aquaporin, complete cds
          Length = 1318

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 52/59 (88%)
 Strand = Plus / Minus

                                                                      
Query: 356 ccgaacttggtggcgctggccctcagcacgtactggtggtacaaggcggcgatggcggc 414
           |||| ||||| |||||||||||||||||| |||||||||||   |||||| ||||||||
Sbjct: 974 ccgagcttggcggcgctggccctcagcacatactggtggtaggcggcggcaatggcggc 916
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>dbj|AB009307.1| Hordeum vulgare HvPIP2;1 mRNA, complete cd
          Length = 1251

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 52/59 (88%)
 Strand = Plus / Minus

                                                                      
Query: 356 ccgaacttggtggcgctggccctcagcacgtactggtggtacaaggcggcgatggcggc 414
           |||| ||||| |||||||||||||||||| |||||||||||   |||||| ||||||||
Sbjct: 894 ccgagcttggcggcgctggccctcagcacatactggtggtaggcggcggcaatggcggc 836
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>gb|AC116395.21| Mus musculus chromosome 14, clone RP23-106K9, complete sequence
          Length = 218656

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 145    acattacatggaagcaaacac 165
              |||||||||||||||||||||
Sbjct: 152543 acattacatggaagcaaacac 152563
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>emb|AL139041.17| Human DNA sequence from clone RP11-408O19 on chromosome 9p11.2-21
             Contains the 3' end of the gene for a novel protein
             similar to sorting nexin 7 (SNX7), the TSCOT gene for
             thymic stromal co-transporter, a pseudogene similar to Mus
             musculus major urinary proteins and a CpG island, complete
             sequence
          Length = 141659

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 289   gtcctctgccatatctacagt 309
             |||||||||||||||||||||
Sbjct: 70594 gtcctctgccatatctacagt 70574
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>emb|BX004993.16| Zebrafish DNA sequence from clone CH211-163C2 in linkage group 7,
              complete sequence
          Length = 150136

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 118    acagtacatcatcctcatcat 138
              |||||||||||||||||||||
Sbjct: 125640 acagtacatcatcctcatcat 125660
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>emb|BX323881.7| Zebrafish DNA sequence from clone CH211-274G13 in linkage group 14,
              complete sequence
          Length = 157039

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 118    acagtacatcatcctcatcat 138
              |||||||||||||||||||||
Sbjct: 128445 acagtacatcatcctcatcat 128425
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>gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome
          Length = 5751492

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 119     cagtacatcatcctcatcatt 139
               |||||||||||||||||||||
Sbjct: 3820278 cagtacatcatcctcatcatt 3820258
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>emb|CT025527.7| Mouse DNA sequence from clone RP23-279J20 on chromosome 16, complete
              sequence
          Length = 202976

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 251    gaccagcagaatccagggac 270
              ||||||||||||||||||||
Sbjct: 160045 gaccagcagaatccagggac 160064
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>emb|Z82265.1|CEF02H6 Caenorhabditis elegans Cosmid F02H6, complete sequence
          Length = 34107

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 120  agtacatcatcctcatcatt 139
            ||||||||||||||||||||
Sbjct: 2425 agtacatcatcctcatcatt 2406
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>tpg|BK003523.1| TPA: TPA_inf: Drosophila melanogaster HDC02994 (HDC02994) gene,
            complete cds
          Length = 2573

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 68   cattgcatttcaaatttccc 87
            ||||||||||||||||||||
Sbjct: 1992 cattgcatttcaaatttccc 1973
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>gb|AC092643.2| Homo sapiens BAC clone RP11-393P9 from 4, complete sequence
          Length = 151902

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 79    aaatttccccccaagttacc 98
             ||||||||||||||||||||
Sbjct: 77542 aaatttccccccaagttacc 77561
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>gb|AC160646.2| Gallus gallus BAC clone CH261-24P2 from chromosome unknown, complete
             sequence
          Length = 212960

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 66    cacattgcatttcaaatttc 85
             ||||||||||||||||||||
Sbjct: 26652 cacattgcatttcaaatttc 26633
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>gb|AC009202.7| Drosophila melanogaster, chromosome 2L, region 36D-36D, BAC clone
              BACR06C11, complete sequence
          Length = 174500

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 68     cattgcatttcaaatttccc 87
              ||||||||||||||||||||
Sbjct: 148936 cattgcatttcaaatttccc 148917
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>gb|AF139814.1|AF139814 Triticum aestivum plasma membrane intrinsic protein 1 (PIP1) mRNA,
           complete cds
          Length = 1283

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 41/48 (85%)
 Strand = Plus / Minus

                                                           
Query: 361 cttggtggcgctggccctcagcacgtactggtggtacaaggcggcgat 408
           |||| |||||| |||||| || | |||||||||||| ||||| |||||
Sbjct: 917 cttgatggcgccggccctgaggatgtactggtggtagaaggccgcgat 870
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>gb|AC115004.14| Mus musculus chromosome 3, clone RP24-182K13, complete sequence
          Length = 141316

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 251   gaccagcagaatccagggac 270
             ||||||||||||||||||||
Sbjct: 79236 gaccagcagaatccagggac 79217
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>gb|AC011662.1|AC011662 Drosophila melanogaster, chromosome 2L, region 36D-, BAC clones
             BACR01G10 and BACR05I08, complete sequence
          Length = 294942

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 68    cattgcatttcaaatttccc 87
             ||||||||||||||||||||
Sbjct: 16921 cattgcatttcaaatttccc 16902
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>gb|AE003656.2| Drosophila melanogaster chromosome 2L, section 65 of 83 of the complete
              sequence
          Length = 251192

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 68     cattgcatttcaaatttccc 87
              ||||||||||||||||||||
Sbjct: 179433 cattgcatttcaaatttccc 179414
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>emb|AL732627.14| Mouse DNA sequence from clone RP23-183L6 on chromosome 4, complete
             sequence
          Length = 202365

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 251   gaccagcagaatccagggac 270
             ||||||||||||||||||||
Sbjct: 57930 gaccagcagaatccagggac 57949
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>gb|AC164108.2| Mus musculus BAC clone RP24-96K15 from chromosome 16, complete sequence
          Length = 180800

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 251   gaccagcagaatccagggac 270
             ||||||||||||||||||||
Sbjct: 46705 gaccagcagaatccagggac 46724


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,274,575
Number of Sequences: 3902068
Number of extensions: 3274575
Number of successful extensions: 72355
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 72239
Number of HSP's gapped (non-prelim): 115
length of query: 414
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 392
effective length of database: 17,147,199,772
effective search space: 6721702310624
effective search space used: 6721702310624
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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