ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet119d07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1QUEF_AZOSE (Q5P6G9) 7-cyano-7-deazaguanine reductase (EC 1.7.1.-) 29 3.1
2SNG2_MOUSE (O55101) Synaptogyrin-2 (Cellugyrin) 28 4.1
3SNG2_RAT (O54980) Synaptogyrin-2 (Cellugyrin) 28 5.3
4BEM2_YEAST (P39960) GTPase-activating protein BEM2/IPL2 (Bud eme... 27 9.0

>QUEF_AZOSE (Q5P6G9) 7-cyano-7-deazaguanine reductase (EC 1.7.1.-)|
          Length = 283

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +2

Query: 161 SITHELGDEISPMGRSVVDRTQWCP 235
           S TH+ G E SP+G+SVV R  + P
Sbjct: 4   SDTHDHGAEASPLGQSVVYRDSYAP 28



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>SNG2_MOUSE (O55101) Synaptogyrin-2 (Cellugyrin)|
          Length = 224

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = -3

Query: 147 DQFACCARVCQAEC--GGVVGVLLYQDFVTSVCFLVEDVFMNQISESS 10
           DQ  C     +  C  G  +GVL    F+ S  FLV D F +QIS ++
Sbjct: 55  DQLYCVFNQNEDACRYGSAIGVLA---FLASAFFLVVDAFFSQISNAT 99



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>SNG2_RAT (O54980) Synaptogyrin-2 (Cellugyrin)|
          Length = 224

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = -3

Query: 147 DQFACCARVCQAEC--GGVVGVLLYQDFVTSVCFLVEDVFMNQISESS 10
           DQ  C     +  C  G  +GVL    F+ S  FLV D F +QIS ++
Sbjct: 55  DQLHCVFNRNEDACRYGSAIGVLA---FLASAFFLVVDAFFSQISNAT 99



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>BEM2_YEAST (P39960) GTPase-activating protein BEM2/IPL2 (Bud emergence protein|
            2)
          Length = 2167

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 9/46 (19%)
 Frame = +1

Query: 40   IFYEKTHRSYKILIKQHTNHTP---------TLSLTHTRTACKLII 150
            +F+EK  +S K+LIK HT+ T            S +   T CK+I+
Sbjct: 1465 LFFEKLPQSIKLLIKLHTSLTTFFVMEISNVNKSSSERLTTCKVIL 1510


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,769,950
Number of Sequences: 219361
Number of extensions: 509704
Number of successful extensions: 1236
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1236
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 1375720320
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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