| Clone Name | rbaet119d03 |
|---|---|
| Clone Library Name | barley_pub |
>THN3_HORVU (P08772) Leaf-specific thionin DB4 precursor [Contains:| Leaf-specific thionin DB4; Acidic protein] Length = 137 Score = 132 bits (331), Expect = 3e-31 Identities = 60/60 (100%), Positives = 60/60 (100%) Frame = -2 Query: 402 LPESGEPDVTQYCTIGCRNSVCDNMDNVFRGQEMKFDMGLCSNACARFCNDGAVIQSVEA 223 LPESGEPDVTQYCTIGCRNSVCDNMDNVFRGQEMKFDMGLCSNACARFCNDGAVIQSVEA Sbjct: 78 LPESGEPDVTQYCTIGCRNSVCDNMDNVFRGQEMKFDMGLCSNACARFCNDGAVIQSVEA 137
>THN6_HORVU (P09618) Leaf-specific thionin BTH6 precursor [Contains:| Leaf-specific thionin BTH6; Acidic protein] Length = 137 Score = 129 bits (325), Expect = 1e-30 Identities = 59/60 (98%), Positives = 59/60 (98%) Frame = -2 Query: 402 LPESGEPDVTQYCTIGCRNSVCDNMDNVFRGQEMKFDMGLCSNACARFCNDGAVIQSVEA 223 LPESGEPDVTQYCTIGC NSVCDNMDNVFRGQEMKFDMGLCSNACARFCNDGAVIQSVEA Sbjct: 78 LPESGEPDVTQYCTIGCTNSVCDNMDNVFRGQEMKFDMGLCSNACARFCNDGAVIQSVEA 137
>THN7_HORVU (Q42838) Thionin BTH7 precursor [Contains: Thionin BTH7; Acidic| protein] Length = 137 Score = 121 bits (304), Expect = 3e-28 Identities = 55/60 (91%), Positives = 57/60 (95%) Frame = -2 Query: 402 LPESGEPDVTQYCTIGCRNSVCDNMDNVFRGQEMKFDMGLCSNACARFCNDGAVIQSVEA 223 LPESGEP+VT+YCTIGCR SVCDNMDNV RGQEMKFDMGLCSNACARFCNDG VIQSVEA Sbjct: 78 LPESGEPNVTEYCTIGCRTSVCDNMDNVSRGQEMKFDMGLCSNACARFCNDGEVIQSVEA 137
>THN5_HORVU (P09617) Leaf-specific thionin precursor [Contains: Leaf-specific| thionin; Acidic protein] Length = 137 Score = 120 bits (300), Expect = 1e-27 Identities = 54/60 (90%), Positives = 56/60 (93%) Frame = -2 Query: 402 LPESGEPDVTQYCTIGCRNSVCDNMDNVFRGQEMKFDMGLCSNACARFCNDGAVIQSVEA 223 LPESGEP+ T+YCTIGCR SVCDNMDNV RGQEMKFDMGLCSNACARFCNDG VIQSVEA Sbjct: 78 LPESGEPNATEYCTIGCRTSVCDNMDNVSRGQEMKFDMGLCSNACARFCNDGEVIQSVEA 137
>THNX_HORVU (Q8H0Q5) Probable leaf thionin precursor [Contains: Probable leaf| thionin; Acidic protein] Length = 137 Score = 119 bits (299), Expect = 1e-27 Identities = 54/60 (90%), Positives = 56/60 (93%) Frame = -2 Query: 402 LPESGEPDVTQYCTIGCRNSVCDNMDNVFRGQEMKFDMGLCSNACARFCNDGAVIQSVEA 223 LPESGEP+ T+YCTIGCR SVCDNMDNV RGQEMKFDMGLCSNACARFCNDG VIQSVEA Sbjct: 78 LPESGEPNATEYCTIGCRTSVCDNMDNVSRGQEMKFDMGLCSNACARFCNDGDVIQSVEA 137
>THN2_WHEAT (P32032) Alpha-2-purothionin precursor [Contains:| Alpha-2-purothionin; Acidic protein] Length = 136 Score = 58.2 bits (139), Expect = 5e-09 Identities = 27/58 (46%), Positives = 36/58 (62%), Gaps = 1/58 (1%) Frame = -2 Query: 393 SGEPDVTQYCTIGCRNSVCDNMDNVFR-GQEMKFDMGLCSNACARFCNDGAVIQSVEA 223 S EPD +YC +GCR+SVCD M N +EMK + C +AC FCN A + S++A Sbjct: 79 SDEPDTIEYCNLGCRSSVCDYMVNAAADDEEMKLYVENCGDACVNFCNGDAGLTSLDA 136
>THN1_WHEAT (P01544) Alpha-1-purothionin precursor (Purothionin A-II)| [Contains: Alpha-1-purothionin; Acidic protein] (Fragment) Length = 126 Score = 58.2 bits (139), Expect = 5e-09 Identities = 27/58 (46%), Positives = 37/58 (63%), Gaps = 1/58 (1%) Frame = -2 Query: 393 SGEPDVTQYCTIGCRNSVCDNMDNVFR-GQEMKFDMGLCSNACARFCNDGAVIQSVEA 223 S EPD +YC +GCR+SVCD M N +EMK + C++AC FCN A + S++A Sbjct: 68 SDEPDTIEYCNLGCRSSVCDYMVNAAADDEEMKLYVENCADACVSFCNGDAGLPSLDA 125
>THNB_WHEAT (P01543) Purothionin A-1 precursor (Purothionin A-I)| (Beta-purothionin) [Contains: Purothionin A-1; Acidic protein] Length = 136 Score = 55.5 bits (132), Expect = 3e-08 Identities = 25/58 (43%), Positives = 36/58 (62%), Gaps = 1/58 (1%) Frame = -2 Query: 393 SGEPDVTQYCTIGCRNSVCDNMDNVFR-GQEMKFDMGLCSNACARFCNDGAVIQSVEA 223 S EPD +YC +GCR+S+CD + N +EMK + C +AC FCN A + S++A Sbjct: 79 SDEPDTMEYCNLGCRSSLCDYIVNAAADDEEMKLYVEQCGDACVNFCNADAGLTSLDA 136
>THNA_HORVU (P01545) Alpha-hordothionin precursor (Purothionin II) [Contains:| Alpha-hordothionin; Acidic protein] Length = 127 Score = 55.1 bits (131), Expect = 4e-08 Identities = 26/58 (44%), Positives = 34/58 (58%), Gaps = 1/58 (1%) Frame = -2 Query: 393 SGEPDVTQYCTIGCRNSVCDNMDNVFR-GQEMKFDMGLCSNACARFCNDGAVIQSVEA 223 S EPD +YC +GCR S+CD M N +EMK + C +AC FCN A + S+ A Sbjct: 70 SDEPDTVKYCNLGCRASMCDYMVNAAADDEEMKLYLENCGDACVNFCNGDAGLTSLTA 127
>THNB_HORVU (P21742) Beta-hordothionin precursor [Contains: Beta-hordothionin;| Acidic protein] Length = 136 Score = 53.9 bits (128), Expect = 9e-08 Identities = 26/58 (44%), Positives = 33/58 (56%), Gaps = 1/58 (1%) Frame = -2 Query: 393 SGEPDVTQYCTIGCRNSVCDNMDNVFR-GQEMKFDMGLCSNACARFCNDGAVIQSVEA 223 S EPD YC +GCR S+CD M N +EMK + CS+AC FCN + S+ A Sbjct: 79 SDEPDTIDYCNLGCRASMCDYMVNAAADDEEMKLYVEHCSDACVNFCNGDVGLTSLTA 136
>THN5_WHEAT (Q05806) Type-5 thionin precursor [Contains: Type-5 thionin (Type V| thionin); Acidic protein] Length = 131 Score = 53.1 bits (126), Expect = 2e-07 Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 2/58 (3%) Frame = -2 Query: 393 SGEPDVTQYCTIGCRNSVCDNMDNVFRG--QEMKFDMGLCSNACARFCNDGAVIQSVE 226 S EP+ +YC++GCR+SVCDNM N +EMK + C AC FC ++ S++ Sbjct: 73 SDEPNAIEYCSLGCRSSVCDNMINTADNSTEEMKLYVKRCGVACDSFCKGDTLLASLD 130
>THN_BRARP (Q9SBK8) Thionin precursor [Contains: Thionin; Acidic protein]| Length = 133 Score = 39.7 bits (91), Expect = 0.002 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 2/47 (4%) Frame = -2 Query: 378 VTQYCTIGCRNSVCDNMDNVFRGQEMKFD--MGLCSNACARFCNDGA 244 V +YC +GC +SVC + + ++ + + C+NAC+ FC G+ Sbjct: 80 VNEYCKLGCASSVCGALTTLKNSMQVNCEGAVSQCTNACSNFCTKGS 126
>THN24_ARATH (Q9C8D6) Probable thionin-2.4 precursor [Contains: Probable| thionin-2.4; Acidic protein] Length = 134 Score = 33.5 bits (75), Expect = 0.12 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 3/49 (6%) Frame = -2 Query: 378 VTQYCTIGCRNSVCDN---MDNVFRGQEMKFDMGLCSNACARFCNDGAV 241 VT+YC +GC +SVC + N + + ++ C+ AC+ C G++ Sbjct: 80 VTEYCKLGCVSSVCGALTILQNSDASEIVNGEVEKCTMACSTVCTKGSM 128
>THN22_ARATH (Q42597) Thionin-2.2 precursor [Contains: Thionin-2.2; Acidic| protein] Length = 134 Score = 33.5 bits (75), Expect = 0.12 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 3/56 (5%) Frame = -2 Query: 402 LPESGEPDVTQYCTIGCRNSVC---DNMDNVFRGQEMKFDMGLCSNACARFCNDGA 244 L SG+ V +YC +GC +SVC + N + + + C+ AC+ C G+ Sbjct: 73 LENSGDA-VNEYCKLGCASSVCGALTTLQNFDTSKVLSEAVEQCTKACSSVCTGGS 127
>ROBO2_MOUSE (Q7TPD3) Roundabout homolog 2 precursor| Length = 1470 Score = 32.7 bits (73), Expect = 0.21 Identities = 16/63 (25%), Positives = 35/63 (55%) Frame = -3 Query: 386 NQMSLSTAPLDAGILSVTTWTMFSVAKR*NSTWDSAATHVPVSVMMVQSFSLLKPNHAFL 207 N ++LS P G+L + + + + ++ +++W + A HV ++ V+ L+PN +L Sbjct: 540 NSVTLSWQPGTPGVLPASAYIIEAFSQSVSNSWQTVANHVKTTLYTVRG---LRPNTIYL 596 Query: 206 CMI 198 M+ Sbjct: 597 FMV 599
>THN21_ARATH (Q42596) Thionin-2.1 precursor [Contains: Thionin-2.1; Acidic| protein] Length = 134 Score = 31.6 bits (70), Expect = 0.47 Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 3/56 (5%) Frame = -2 Query: 396 ESGEPDVTQYCTIGCRNSVCDNMDNVFRGQEMKFDMGL---CSNACARFCNDGAVI 238 E+ ++C +GC SVC M+ + + G C+ C+ FC V+ Sbjct: 71 ENSADATNEHCKLGCETSVCGAMNTLQNSDASEIVNGASEQCAKGCSIFCTKSYVV 126
>ROBO2_HUMAN (Q9HCK4) Roundabout homolog 2 precursor| Length = 1378 Score = 31.2 bits (69), Expect = 0.62 Identities = 16/63 (25%), Positives = 34/63 (53%) Frame = -3 Query: 386 NQMSLSTAPLDAGILSVTTWTMFSVAKR*NSTWDSAATHVPVSVMMVQSFSLLKPNHAFL 207 N ++LS P G L + + + + ++ +++W + A HV ++ V+ L+PN +L Sbjct: 536 NSVTLSWQPGTPGTLPASAYIIEAFSQSVSNSWQTVANHVKTTLYTVRG---LRPNTIYL 592 Query: 206 CMI 198 M+ Sbjct: 593 FMV 595
>THNB_VISAL (P08943) Viscotoxin B precursor [Contains: Viscotoxin B; Acidic| protein] (Fragment) Length = 103 Score = 30.4 bits (67), Expect = 1.1 Identities = 13/41 (31%), Positives = 22/41 (53%) Frame = -2 Query: 369 YCTIGCRNSVCDNMDNVFRGQEMKFDMGLCSNACARFCNDG 247 YCT+GC++S C ++ E+ + C AC+ C+ G Sbjct: 54 YCTLGCQSSKCASITTP-PNSEVDAEAVRCKAACSNLCDFG 93
>THN23_ARATH (Q8VZK8) Probable thionin-2.3 precursor [Contains: Probable| thionin-2.3; Acidic protein] Length = 135 Score = 29.3 bits (64), Expect = 2.3 Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 3/56 (5%) Frame = -2 Query: 402 LPESGEPDVTQYCTIGCRNSVC---DNMDNVFRGQEMKFDMGLCSNACARFCNDGA 244 L SG+ V YC +GC +S+C ++ + ++ + C+ AC+ C G+ Sbjct: 74 LTNSGDV-VNVYCKLGCVSSLCGALTSLQKLDTSGKVNVAVERCTKACSTICTKGS 128
>THN3_VISAL (P01538) Viscotoxin A3 precursor [Contains: Viscotoxin A3; Acidic| protein] Length = 111 Score = 28.1 bits (61), Expect = 5.2 Identities = 13/40 (32%), Positives = 17/40 (42%) Frame = -2 Query: 369 YCTIGCRNSVCDNMDNVFRGQEMKFDMGLCSNACARFCND 250 YCT+GC +S C N + C AC+ C D Sbjct: 74 YCTLGCESSQCATNSN------GDAEAVRCKTACSDLCQD 107
>O52B4_HUMAN (Q8NGK2) Olfactory receptor 52B4 (Olfactory receptor OR11-3)| Length = 314 Score = 28.1 bits (61), Expect = 5.2 Identities = 12/23 (52%), Positives = 17/23 (73%) Frame = -3 Query: 236 SLLKPNHAFLCMISMAKVVLSFC 168 SL +P + FLCM++ A +VLS C Sbjct: 56 SLHEPMYLFLCMLAGADIVLSTC 78
>RHAR_ERWCT (Q6DA21) HTH-type transcriptional activator rhaR (L-rhamnose operon| transcriptional activator rhaR) Length = 284 Score = 28.1 bits (61), Expect = 5.2 Identities = 13/46 (28%), Positives = 23/46 (50%) Frame = +2 Query: 41 YIKPRVQIDSSWRLLLEQGKKTNT*VRWYIGFHTADGIKIIQDKMT 178 YI+ R+ + + W+ LL G+ + W +G D I+ D +T Sbjct: 92 YIRNRLTLSADWQTLLPSGELPQSQRHWCLGSEGMDTIREKVDALT 137
>TRME_PROMP (Q7V395) tRNA modification GTPase trmE| Length = 460 Score = 27.7 bits (60), Expect = 6.8 Identities = 15/42 (35%), Positives = 20/42 (47%) Frame = +1 Query: 223 GFNRLNDCTIITETGTCVAAESHVEFHLLATENIVHVVTDRI 348 G +N C I ET + A ESH FH +N+ + D I Sbjct: 32 GEEAINSCKNIVETKSKYAWESHRVFHGFIKDNLENKFIDEI 73
>NUP88_DROME (Q9GYU8) Nuclear pore complex protein Nup88 (Nucleoporin Nup88) (88| kDa nuclear pore complex protein) (dNup88) (Protein members only) Length = 702 Score = 27.7 bits (60), Expect = 6.8 Identities = 11/41 (26%), Positives = 24/41 (58%) Frame = +1 Query: 238 NDCTIITETGTCVAAESHVEFHLLATENIVHVVTDRIPASN 360 + C ++ + +AA+ +++F L ++V + DR+ ASN Sbjct: 46 DSCLLVRNWRSSLAAKVNIQFQTLIPSSLVSLEVDRVLASN 86
>NPT2B_RAT (Q9JJ09) Sodium-dependent phosphate transport protein 2B| (Sodium/phosphate cotransporter 2B) (Na(+)/Pi cotransporter 2B) (Sodium-phosphate transport protein 2B) (Na(+)-dependent phosphate cotransporter 2B) (NaPi-2b) (Solute carrier family 34 me Length = 695 Score = 27.3 bits (59), Expect = 8.9 Identities = 11/26 (42%), Positives = 13/26 (50%) Frame = +3 Query: 276 CCRVPCRISSLGHGKHCPCCHRQNSC 353 CCRV CR+ + G C CC C Sbjct: 621 CCRVCCRVCCMVCG--CKCCRCSKCC 644
>NPT2B_MOUSE (Q9DBP0) Sodium-dependent phosphate transport protein 2B| (Sodium/phosphate cotransporter 2B) (Na(+)/Pi cotransporter 2B) (Sodium-phosphate transport protein 2B) (Na(+)-dependent phosphate cotransporter 2B) (NaPi-2b) (Solute carrier family 34 Length = 697 Score = 27.3 bits (59), Expect = 8.9 Identities = 11/26 (42%), Positives = 13/26 (50%) Frame = +3 Query: 276 CCRVPCRISSLGHGKHCPCCHRQNSC 353 CCRV CR+ + G C CC C Sbjct: 621 CCRVCCRVCCMVCG--CKCCRCSKCC 644
>5HT1A_PONPY (Q9N296) 5-hydroxytryptamine 1A receptor (5-HT-1A) (Serotonin| receptor 1A) (5-HT1A) Length = 422 Score = 27.3 bits (59), Expect = 8.9 Identities = 12/29 (41%), Positives = 17/29 (58%) Frame = -2 Query: 312 GQEMKFDMGLCSNACARFCNDGAVIQSVE 226 G E K GLC+N R +DGA ++ +E Sbjct: 266 GVESKAGGGLCANGAVRQGDDGAALEVIE 294 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 62,490,663 Number of Sequences: 219361 Number of extensions: 1253905 Number of successful extensions: 3071 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 2991 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3061 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 1359926328 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)