ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet119d03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1THN3_HORVU (P08772) Leaf-specific thionin DB4 precursor [Contain... 132 3e-31
2THN6_HORVU (P09618) Leaf-specific thionin BTH6 precursor [Contai... 129 1e-30
3THN7_HORVU (Q42838) Thionin BTH7 precursor [Contains: Thionin BT... 121 3e-28
4THN5_HORVU (P09617) Leaf-specific thionin precursor [Contains: L... 120 1e-27
5THNX_HORVU (Q8H0Q5) Probable leaf thionin precursor [Contains: P... 119 1e-27
6THN2_WHEAT (P32032) Alpha-2-purothionin precursor [Contains: Alp... 58 5e-09
7THN1_WHEAT (P01544) Alpha-1-purothionin precursor (Purothionin A... 58 5e-09
8THNB_WHEAT (P01543) Purothionin A-1 precursor (Purothionin A-I) ... 55 3e-08
9THNA_HORVU (P01545) Alpha-hordothionin precursor (Purothionin II... 55 4e-08
10THNB_HORVU (P21742) Beta-hordothionin precursor [Contains: Beta-... 54 9e-08
11THN5_WHEAT (Q05806) Type-5 thionin precursor [Contains: Type-5 t... 53 2e-07
12THN_BRARP (Q9SBK8) Thionin precursor [Contains: Thionin; Acidic ... 40 0.002
13THN24_ARATH (Q9C8D6) Probable thionin-2.4 precursor [Contains: P... 33 0.12
14THN22_ARATH (Q42597) Thionin-2.2 precursor [Contains: Thionin-2.... 33 0.12
15ROBO2_MOUSE (Q7TPD3) Roundabout homolog 2 precursor 33 0.21
16THN21_ARATH (Q42596) Thionin-2.1 precursor [Contains: Thionin-2.... 32 0.47
17ROBO2_HUMAN (Q9HCK4) Roundabout homolog 2 precursor 31 0.62
18THNB_VISAL (P08943) Viscotoxin B precursor [Contains: Viscotoxin... 30 1.1
19THN23_ARATH (Q8VZK8) Probable thionin-2.3 precursor [Contains: P... 29 2.3
20THN3_VISAL (P01538) Viscotoxin A3 precursor [Contains: Viscotoxi... 28 5.2
21O52B4_HUMAN (Q8NGK2) Olfactory receptor 52B4 (Olfactory receptor... 28 5.2
22RHAR_ERWCT (Q6DA21) HTH-type transcriptional activator rhaR (L-r... 28 5.2
23TRME_PROMP (Q7V395) tRNA modification GTPase trmE 28 6.8
24NUP88_DROME (Q9GYU8) Nuclear pore complex protein Nup88 (Nucleop... 28 6.8
25NPT2B_RAT (Q9JJ09) Sodium-dependent phosphate transport protein ... 27 8.9
26NPT2B_MOUSE (Q9DBP0) Sodium-dependent phosphate transport protei... 27 8.9
275HT1A_PONPY (Q9N296) 5-hydroxytryptamine 1A receptor (5-HT-1A) (... 27 8.9

>THN3_HORVU (P08772) Leaf-specific thionin DB4 precursor [Contains:|
           Leaf-specific thionin DB4; Acidic protein]
          Length = 137

 Score =  132 bits (331), Expect = 3e-31
 Identities = 60/60 (100%), Positives = 60/60 (100%)
 Frame = -2

Query: 402 LPESGEPDVTQYCTIGCRNSVCDNMDNVFRGQEMKFDMGLCSNACARFCNDGAVIQSVEA 223
           LPESGEPDVTQYCTIGCRNSVCDNMDNVFRGQEMKFDMGLCSNACARFCNDGAVIQSVEA
Sbjct: 78  LPESGEPDVTQYCTIGCRNSVCDNMDNVFRGQEMKFDMGLCSNACARFCNDGAVIQSVEA 137



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>THN6_HORVU (P09618) Leaf-specific thionin BTH6 precursor [Contains:|
           Leaf-specific thionin BTH6; Acidic protein]
          Length = 137

 Score =  129 bits (325), Expect = 1e-30
 Identities = 59/60 (98%), Positives = 59/60 (98%)
 Frame = -2

Query: 402 LPESGEPDVTQYCTIGCRNSVCDNMDNVFRGQEMKFDMGLCSNACARFCNDGAVIQSVEA 223
           LPESGEPDVTQYCTIGC NSVCDNMDNVFRGQEMKFDMGLCSNACARFCNDGAVIQSVEA
Sbjct: 78  LPESGEPDVTQYCTIGCTNSVCDNMDNVFRGQEMKFDMGLCSNACARFCNDGAVIQSVEA 137



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>THN7_HORVU (Q42838) Thionin BTH7 precursor [Contains: Thionin BTH7; Acidic|
           protein]
          Length = 137

 Score =  121 bits (304), Expect = 3e-28
 Identities = 55/60 (91%), Positives = 57/60 (95%)
 Frame = -2

Query: 402 LPESGEPDVTQYCTIGCRNSVCDNMDNVFRGQEMKFDMGLCSNACARFCNDGAVIQSVEA 223
           LPESGEP+VT+YCTIGCR SVCDNMDNV RGQEMKFDMGLCSNACARFCNDG VIQSVEA
Sbjct: 78  LPESGEPNVTEYCTIGCRTSVCDNMDNVSRGQEMKFDMGLCSNACARFCNDGEVIQSVEA 137



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>THN5_HORVU (P09617) Leaf-specific thionin precursor [Contains: Leaf-specific|
           thionin; Acidic protein]
          Length = 137

 Score =  120 bits (300), Expect = 1e-27
 Identities = 54/60 (90%), Positives = 56/60 (93%)
 Frame = -2

Query: 402 LPESGEPDVTQYCTIGCRNSVCDNMDNVFRGQEMKFDMGLCSNACARFCNDGAVIQSVEA 223
           LPESGEP+ T+YCTIGCR SVCDNMDNV RGQEMKFDMGLCSNACARFCNDG VIQSVEA
Sbjct: 78  LPESGEPNATEYCTIGCRTSVCDNMDNVSRGQEMKFDMGLCSNACARFCNDGEVIQSVEA 137



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>THNX_HORVU (Q8H0Q5) Probable leaf thionin precursor [Contains: Probable leaf|
           thionin; Acidic protein]
          Length = 137

 Score =  119 bits (299), Expect = 1e-27
 Identities = 54/60 (90%), Positives = 56/60 (93%)
 Frame = -2

Query: 402 LPESGEPDVTQYCTIGCRNSVCDNMDNVFRGQEMKFDMGLCSNACARFCNDGAVIQSVEA 223
           LPESGEP+ T+YCTIGCR SVCDNMDNV RGQEMKFDMGLCSNACARFCNDG VIQSVEA
Sbjct: 78  LPESGEPNATEYCTIGCRTSVCDNMDNVSRGQEMKFDMGLCSNACARFCNDGDVIQSVEA 137



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>THN2_WHEAT (P32032) Alpha-2-purothionin precursor [Contains:|
           Alpha-2-purothionin; Acidic protein]
          Length = 136

 Score = 58.2 bits (139), Expect = 5e-09
 Identities = 27/58 (46%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
 Frame = -2

Query: 393 SGEPDVTQYCTIGCRNSVCDNMDNVFR-GQEMKFDMGLCSNACARFCNDGAVIQSVEA 223
           S EPD  +YC +GCR+SVCD M N     +EMK  +  C +AC  FCN  A + S++A
Sbjct: 79  SDEPDTIEYCNLGCRSSVCDYMVNAAADDEEMKLYVENCGDACVNFCNGDAGLTSLDA 136



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>THN1_WHEAT (P01544) Alpha-1-purothionin precursor (Purothionin A-II)|
           [Contains: Alpha-1-purothionin; Acidic protein]
           (Fragment)
          Length = 126

 Score = 58.2 bits (139), Expect = 5e-09
 Identities = 27/58 (46%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
 Frame = -2

Query: 393 SGEPDVTQYCTIGCRNSVCDNMDNVFR-GQEMKFDMGLCSNACARFCNDGAVIQSVEA 223
           S EPD  +YC +GCR+SVCD M N     +EMK  +  C++AC  FCN  A + S++A
Sbjct: 68  SDEPDTIEYCNLGCRSSVCDYMVNAAADDEEMKLYVENCADACVSFCNGDAGLPSLDA 125



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>THNB_WHEAT (P01543) Purothionin A-1 precursor (Purothionin A-I)|
           (Beta-purothionin) [Contains: Purothionin A-1; Acidic
           protein]
          Length = 136

 Score = 55.5 bits (132), Expect = 3e-08
 Identities = 25/58 (43%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
 Frame = -2

Query: 393 SGEPDVTQYCTIGCRNSVCDNMDNVFR-GQEMKFDMGLCSNACARFCNDGAVIQSVEA 223
           S EPD  +YC +GCR+S+CD + N     +EMK  +  C +AC  FCN  A + S++A
Sbjct: 79  SDEPDTMEYCNLGCRSSLCDYIVNAAADDEEMKLYVEQCGDACVNFCNADAGLTSLDA 136



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>THNA_HORVU (P01545) Alpha-hordothionin precursor (Purothionin II) [Contains:|
           Alpha-hordothionin; Acidic protein]
          Length = 127

 Score = 55.1 bits (131), Expect = 4e-08
 Identities = 26/58 (44%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
 Frame = -2

Query: 393 SGEPDVTQYCTIGCRNSVCDNMDNVFR-GQEMKFDMGLCSNACARFCNDGAVIQSVEA 223
           S EPD  +YC +GCR S+CD M N     +EMK  +  C +AC  FCN  A + S+ A
Sbjct: 70  SDEPDTVKYCNLGCRASMCDYMVNAAADDEEMKLYLENCGDACVNFCNGDAGLTSLTA 127



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>THNB_HORVU (P21742) Beta-hordothionin precursor [Contains: Beta-hordothionin;|
           Acidic protein]
          Length = 136

 Score = 53.9 bits (128), Expect = 9e-08
 Identities = 26/58 (44%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
 Frame = -2

Query: 393 SGEPDVTQYCTIGCRNSVCDNMDNVFR-GQEMKFDMGLCSNACARFCNDGAVIQSVEA 223
           S EPD   YC +GCR S+CD M N     +EMK  +  CS+AC  FCN    + S+ A
Sbjct: 79  SDEPDTIDYCNLGCRASMCDYMVNAAADDEEMKLYVEHCSDACVNFCNGDVGLTSLTA 136



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>THN5_WHEAT (Q05806) Type-5 thionin precursor [Contains: Type-5 thionin (Type V|
           thionin); Acidic protein]
          Length = 131

 Score = 53.1 bits (126), Expect = 2e-07
 Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
 Frame = -2

Query: 393 SGEPDVTQYCTIGCRNSVCDNMDNVFRG--QEMKFDMGLCSNACARFCNDGAVIQSVE 226
           S EP+  +YC++GCR+SVCDNM N      +EMK  +  C  AC  FC    ++ S++
Sbjct: 73  SDEPNAIEYCSLGCRSSVCDNMINTADNSTEEMKLYVKRCGVACDSFCKGDTLLASLD 130



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>THN_BRARP (Q9SBK8) Thionin precursor [Contains: Thionin; Acidic protein]|
          Length = 133

 Score = 39.7 bits (91), Expect = 0.002
 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
 Frame = -2

Query: 378 VTQYCTIGCRNSVCDNMDNVFRGQEMKFD--MGLCSNACARFCNDGA 244
           V +YC +GC +SVC  +  +    ++  +  +  C+NAC+ FC  G+
Sbjct: 80  VNEYCKLGCASSVCGALTTLKNSMQVNCEGAVSQCTNACSNFCTKGS 126



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>THN24_ARATH (Q9C8D6) Probable thionin-2.4 precursor [Contains: Probable|
           thionin-2.4; Acidic protein]
          Length = 134

 Score = 33.5 bits (75), Expect = 0.12
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
 Frame = -2

Query: 378 VTQYCTIGCRNSVCDN---MDNVFRGQEMKFDMGLCSNACARFCNDGAV 241
           VT+YC +GC +SVC     + N    + +  ++  C+ AC+  C  G++
Sbjct: 80  VTEYCKLGCVSSVCGALTILQNSDASEIVNGEVEKCTMACSTVCTKGSM 128



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>THN22_ARATH (Q42597) Thionin-2.2 precursor [Contains: Thionin-2.2; Acidic|
           protein]
          Length = 134

 Score = 33.5 bits (75), Expect = 0.12
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
 Frame = -2

Query: 402 LPESGEPDVTQYCTIGCRNSVC---DNMDNVFRGQEMKFDMGLCSNACARFCNDGA 244
           L  SG+  V +YC +GC +SVC     + N    + +   +  C+ AC+  C  G+
Sbjct: 73  LENSGDA-VNEYCKLGCASSVCGALTTLQNFDTSKVLSEAVEQCTKACSSVCTGGS 127



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>ROBO2_MOUSE (Q7TPD3) Roundabout homolog 2 precursor|
          Length = 1470

 Score = 32.7 bits (73), Expect = 0.21
 Identities = 16/63 (25%), Positives = 35/63 (55%)
 Frame = -3

Query: 386 NQMSLSTAPLDAGILSVTTWTMFSVAKR*NSTWDSAATHVPVSVMMVQSFSLLKPNHAFL 207
           N ++LS  P   G+L  + + + + ++  +++W + A HV  ++  V+    L+PN  +L
Sbjct: 540 NSVTLSWQPGTPGVLPASAYIIEAFSQSVSNSWQTVANHVKTTLYTVRG---LRPNTIYL 596

Query: 206 CMI 198
            M+
Sbjct: 597 FMV 599



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>THN21_ARATH (Q42596) Thionin-2.1 precursor [Contains: Thionin-2.1; Acidic|
           protein]
          Length = 134

 Score = 31.6 bits (70), Expect = 0.47
 Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
 Frame = -2

Query: 396 ESGEPDVTQYCTIGCRNSVCDNMDNVFRGQEMKFDMGL---CSNACARFCNDGAVI 238
           E+      ++C +GC  SVC  M+ +      +   G    C+  C+ FC    V+
Sbjct: 71  ENSADATNEHCKLGCETSVCGAMNTLQNSDASEIVNGASEQCAKGCSIFCTKSYVV 126



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>ROBO2_HUMAN (Q9HCK4) Roundabout homolog 2 precursor|
          Length = 1378

 Score = 31.2 bits (69), Expect = 0.62
 Identities = 16/63 (25%), Positives = 34/63 (53%)
 Frame = -3

Query: 386 NQMSLSTAPLDAGILSVTTWTMFSVAKR*NSTWDSAATHVPVSVMMVQSFSLLKPNHAFL 207
           N ++LS  P   G L  + + + + ++  +++W + A HV  ++  V+    L+PN  +L
Sbjct: 536 NSVTLSWQPGTPGTLPASAYIIEAFSQSVSNSWQTVANHVKTTLYTVRG---LRPNTIYL 592

Query: 206 CMI 198
            M+
Sbjct: 593 FMV 595



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>THNB_VISAL (P08943) Viscotoxin B precursor [Contains: Viscotoxin B; Acidic|
           protein] (Fragment)
          Length = 103

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -2

Query: 369 YCTIGCRNSVCDNMDNVFRGQEMKFDMGLCSNACARFCNDG 247
           YCT+GC++S C ++       E+  +   C  AC+  C+ G
Sbjct: 54  YCTLGCQSSKCASITTP-PNSEVDAEAVRCKAACSNLCDFG 93



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>THN23_ARATH (Q8VZK8) Probable thionin-2.3 precursor [Contains: Probable|
           thionin-2.3; Acidic protein]
          Length = 135

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
 Frame = -2

Query: 402 LPESGEPDVTQYCTIGCRNSVC---DNMDNVFRGQEMKFDMGLCSNACARFCNDGA 244
           L  SG+  V  YC +GC +S+C    ++  +    ++   +  C+ AC+  C  G+
Sbjct: 74  LTNSGDV-VNVYCKLGCVSSLCGALTSLQKLDTSGKVNVAVERCTKACSTICTKGS 128



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>THN3_VISAL (P01538) Viscotoxin A3 precursor [Contains: Viscotoxin A3; Acidic|
           protein]
          Length = 111

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 13/40 (32%), Positives = 17/40 (42%)
 Frame = -2

Query: 369 YCTIGCRNSVCDNMDNVFRGQEMKFDMGLCSNACARFCND 250
           YCT+GC +S C    N         +   C  AC+  C D
Sbjct: 74  YCTLGCESSQCATNSN------GDAEAVRCKTACSDLCQD 107



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>O52B4_HUMAN (Q8NGK2) Olfactory receptor 52B4 (Olfactory receptor OR11-3)|
          Length = 314

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = -3

Query: 236 SLLKPNHAFLCMISMAKVVLSFC 168
           SL +P + FLCM++ A +VLS C
Sbjct: 56  SLHEPMYLFLCMLAGADIVLSTC 78



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>RHAR_ERWCT (Q6DA21) HTH-type transcriptional activator rhaR (L-rhamnose operon|
           transcriptional activator rhaR)
          Length = 284

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +2

Query: 41  YIKPRVQIDSSWRLLLEQGKKTNT*VRWYIGFHTADGIKIIQDKMT 178
           YI+ R+ + + W+ LL  G+   +   W +G    D I+   D +T
Sbjct: 92  YIRNRLTLSADWQTLLPSGELPQSQRHWCLGSEGMDTIREKVDALT 137



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>TRME_PROMP (Q7V395) tRNA modification GTPase trmE|
          Length = 460

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +1

Query: 223 GFNRLNDCTIITETGTCVAAESHVEFHLLATENIVHVVTDRI 348
           G   +N C  I ET +  A ESH  FH    +N+ +   D I
Sbjct: 32  GEEAINSCKNIVETKSKYAWESHRVFHGFIKDNLENKFIDEI 73



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>NUP88_DROME (Q9GYU8) Nuclear pore complex protein Nup88 (Nucleoporin Nup88) (88|
           kDa nuclear pore complex protein) (dNup88) (Protein
           members only)
          Length = 702

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 11/41 (26%), Positives = 24/41 (58%)
 Frame = +1

Query: 238 NDCTIITETGTCVAAESHVEFHLLATENIVHVVTDRIPASN 360
           + C ++    + +AA+ +++F  L   ++V +  DR+ ASN
Sbjct: 46  DSCLLVRNWRSSLAAKVNIQFQTLIPSSLVSLEVDRVLASN 86



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>NPT2B_RAT (Q9JJ09) Sodium-dependent phosphate transport protein 2B|
           (Sodium/phosphate cotransporter 2B) (Na(+)/Pi
           cotransporter 2B) (Sodium-phosphate transport protein
           2B) (Na(+)-dependent phosphate cotransporter 2B)
           (NaPi-2b) (Solute carrier family 34 me
          Length = 695

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +3

Query: 276 CCRVPCRISSLGHGKHCPCCHRQNSC 353
           CCRV CR+  +  G  C CC     C
Sbjct: 621 CCRVCCRVCCMVCG--CKCCRCSKCC 644



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>NPT2B_MOUSE (Q9DBP0) Sodium-dependent phosphate transport protein 2B|
           (Sodium/phosphate cotransporter 2B) (Na(+)/Pi
           cotransporter 2B) (Sodium-phosphate transport protein
           2B) (Na(+)-dependent phosphate cotransporter 2B)
           (NaPi-2b) (Solute carrier family 34
          Length = 697

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +3

Query: 276 CCRVPCRISSLGHGKHCPCCHRQNSC 353
           CCRV CR+  +  G  C CC     C
Sbjct: 621 CCRVCCRVCCMVCG--CKCCRCSKCC 644



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>5HT1A_PONPY (Q9N296) 5-hydroxytryptamine 1A receptor (5-HT-1A) (Serotonin|
           receptor 1A) (5-HT1A)
          Length = 422

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 312 GQEMKFDMGLCSNACARFCNDGAVIQSVE 226
           G E K   GLC+N   R  +DGA ++ +E
Sbjct: 266 GVESKAGGGLCANGAVRQGDDGAALEVIE 294


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,490,663
Number of Sequences: 219361
Number of extensions: 1253905
Number of successful extensions: 3071
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 2991
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3061
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 1359926328
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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