ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet119c11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|X93174.1|HVXETXEA H.vulgare mRNA for xyloglucan endotransgly... 823 0.0
2dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 188 1e-44
3dbj|AP005445.3| Oryza sativa (japonica cultivar-group) genomic D... 188 1e-44
4dbj|AK105513.1| Oryza sativa (japonica cultivar-group) cDNA clon... 188 1e-44
5gb|AY103775.1| Zea mays PCO076979 mRNA sequence 145 1e-31
6gb|AY023463.1| Oryza sativa microsatellite MRG5788 containing (T... 115 1e-22
7emb|AJ295943.1|FPR295943 Festuca pratensis mRNA for Xet1 protein 96 1e-16
8emb|X93175.1|HVXETXEB H.vulgare mRNA for xyloglucan endotransgly... 96 1e-16
9gb|AY589589.1| Triticum aestivum endotransglucosylase/hydrolase ... 88 3e-14
10gb|BT014685.1| Oryza sativa AK104912 mRNA sequence 80 7e-12
11dbj|AP003771.2| Oryza sativa (japonica cultivar-group) genomic D... 80 7e-12
12dbj|AK104912.1| Oryza sativa (japonica cultivar-group) cDNA clon... 80 7e-12
13dbj|AK066125.1| Oryza sativa (japonica cultivar-group) cDNA clon... 80 7e-12
14dbj|AK058291.1| Oryza sativa (japonica cultivar-group) cDNA clon... 80 7e-12
15gb|AY103891.1| Zea mays PCO065722 mRNA sequence 72 2e-09
16gb|BT019084.1| Zea mays clone Contig673.F mRNA sequence 64 4e-07
17gb|AY106776.1| Zea mays PCO076978 mRNA sequence 64 4e-07
18dbj|AB196977.1| Sagittaria pygmaea SpXTH4 mRNA for xyloglucan en... 58 2e-05
19gb|DQ100340.1| Eucalyptus globulus putative xyloglucan endotrans... 56 1e-04
20dbj|AB083025.1| Glycine max mRNA for syringolide-induced protein... 54 4e-04
21gb|AY476737.1| Gossypium hirsutum XET mRNA, partial sequence 52 0.001
22gb|AF223420.1|AF223420 Asparagus officinalis xyloglucan endotran... 52 0.001
23emb|AJ130885.1|FSY130885 Fagus sylvatica mRNA for xyloglucan end... 48 0.023
24emb|AJ555155.1|CSA555155 Cucumis sativus XTH3 gene for putative ... 46 0.092
25emb|AJ555126.1|CSA555126 Cucumis sativus mRNA for putative xylog... 46 0.092
26gb|AY105365.1| Zea mays PCO092487 mRNA sequence 46 0.092
27gb|U15964.1|ZMU15964 Zea mays xyloglucan endo-transglycosylase h... 46 0.092
28gb|U15781.1|ZMU15781 Zea mays xyloglucan endo-transglycosylase h... 46 0.092
29ref|XM_473787.1| Oryza sativa (japonica cultivar-group), predic... 44 0.36
30ref|XM_417762.1| PREDICTED: Gallus gallus similar to axonemal dy... 44 0.36
31ref|XM_607493.2| PREDICTED: Bos taurus similar to dynein, axonem... 44 0.36
32ref|XM_539590.2| PREDICTED: Canis familiaris similar to axonemal... 44 0.36
33gb|AY365421.1| Sesamum indicum xyloglucan endotransglycosylase m... 44 0.36
34emb|X93173.1|HVXETPM5 H.vulgare mRNA for xyloglucan endotransgly... 44 0.36
35gb|AY144593.1| Malus x domestica xyloglucan endotransglycosylase... 44 0.36
36emb|AL606638.2|OSJN00077 Oryza sativa genomic DNA, chromosome 4,... 44 0.36
37gb|CP000249.1| Frankia sp. CcI3, complete genome 44 0.36
38dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.36
39dbj|AK063614.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.36
40gb|AY841854.1| Vigna radiata xyloglucan endotransglucosylase/hyd... 42 1.4
41gb|BC090193.1| Xenopus laevis cDNA clone MGC:85054 IMAGE:6327047... 42 1.4
42dbj|AB086396.1| Vigna angularis VaXTH2 gene for xyloglucan endot... 42 1.4
43gb|DQ279095.1| Rosa x borboniana xyloglucan endotransglucosylase... 42 1.4
44dbj|D16455.1|SOYEXT2 Soybean mRNA for endo-xyloglucan transferas... 42 1.4
45gb|AE014075.1| Escherichia coli CFT073, complete genome 40 5.7
46emb|AL590111.14| Human DNA sequence from clone RP11-570F3 on chr... 40 5.7
47gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome 40 5.7
48gb|U00096.2| Escherichia coli K-12 MG1655, complete genome 40 5.7
49emb|BX640451.1| Bordetella bronchiseptica strain RB50, complete ... 40 5.7
50emb|BX640436.1| Bordetella parapertussis strain 12822, complete ... 40 5.7
51emb|BX640411.1| Bordetella pertussis strain Tohama I, complete g... 40 5.7
52emb|BX571768.19| Zebrafish DNA sequence from clone DKEYP-2C4 in ... 40 5.7
53dbj|AP009048.1| Escherichia coli W3110 DNA, complete genome 40 5.7
54dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 40 5.7
55gb|CP000232.1| Moorella thermoacetica ATCC 39073, complete genome 40 5.7
56gb|AC148685.1| Macaca mulatta Major Histocompatibility Complex B... 40 5.7
57dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
58gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 5.7
59dbj|AP005903.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
60dbj|AB046702.2| Aspergillus awamori AwabfA gene for alpha-L-arab... 40 5.7
61dbj|AB085903.1| Aspergillus kawachii AkabfA gene for alpha-L-ara... 40 5.7
62emb|X75413.1|ECHEMF E.coli orf1, orf3 and hemF gene for copropor... 40 5.7
63dbj|AB086395.1| Vigna angularis VaXTH1 gene for xyloglucan endot... 40 5.7
64gb|L46792.1|ACTXET Actinidia deliciosa clone AdXET-5 xyloglucan ... 40 5.7
65dbj|D16458.1|VIREXT5 V.angularis mRNA for endo-xyloglucan transf... 40 5.7

>emb|X93174.1|HVXETXEA H.vulgare mRNA for xyloglucan endotransglycosylase-like protein (XEA)
          Length = 1174

 Score =  823 bits (415), Expect = 0.0
 Identities = 421/423 (99%)
 Strand = Plus / Minus

                                                                        
Query: 1    agaacagaacgagatgagacatatattacacacgatctgaacgtgacaaggagcaaacag 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1153 agaacagaacgagatgagacatatattacacacgatctgaacgtgacaaggagcaaacag 1094

                                                                        
Query: 61   aagaatctaccacccgctccatttcacattatcccccctcactggtccttatttatcata 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1093 aagaatctaccacccgctccatttcacattatcccccctcactggtccttatttatcata 1034

                                                                        
Query: 121  cagtacaatacagacgcccccatcttccctatccccggccgtcttcctccggcgatcgac 180
            ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1033 cagtacaatacagacgcccccatcttccctatctccggccgtcttcctccggcgatcgac 974

                                                                        
Query: 181  gtatacacggacggtccaatgctaccttgcttttgatggacggggactacatggagcact 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 973  gtatacacggacggtccaatgctaccttgcttttgatggacggggactacatggagcact 914

                                                                        
Query: 241  cggcggggacgcccttggcgacgcgcttggggtcagtgcagtagttgtagatcatgtaat 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 913  cggcggggacgcccttggcgacgcgcttggggtcagtgcagtagttgtagatcatgtaat 854

                                                                        
Query: 301  tgctctgcacccaccgcatccgctgctgcagcgtcaggtccagctcctggttgtaccact 360
            ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 853  tgctctgtacccaccgcatccgctgctgcagcgtcaggtccagctcctggttgtaccact 794

                                                                        
Query: 361  cgccggccgcgccggaagcgcccgtgcccggggccgcttccgtgcccatgctggcgccgc 420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793  cgccggccgcgccggaagcgcccgtgcccggggccgcttccgtgcccatgctggcgccgc 734

               
Query: 421  agc 423
            |||
Sbjct: 733  agc 731



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  188 bits (95), Expect = 1e-44
 Identities = 170/195 (87%)
 Strand = Plus / Plus

                                                                            
Query: 229      acatggagcactcggcggggacgcccttggcgacgcgcttggggtcagtgcagtagttgt 288
                ||||||||||||||||||||||||||| || || ||||||||| || |||||||||||||
Sbjct: 28773068 acatggagcactcggcggggacgccctgggggaagcgcttgggatcggtgcagtagttgt 28773127

                                                                            
Query: 289      agatcatgtaattgctctgcacccaccgcatccgctgctgcagcgtcaggtccagctcct 348
                |||||||||| |||||||||||||||||||||||||||||| |||| ||||| |||||||
Sbjct: 28773128 agatcatgtacttgctctgcacccaccgcatccgctgctgccgcgtgaggtcgagctcct 28773187

                                                                            
Query: 349      ggttgtaccactcgccggccgcgccggaagcgcccgtgcccggggccgcttccgtgccca 408
                ||||||||||  | ||||| ||| |||  ||||| ||||| || || || || ||||| |
Sbjct: 28773188 ggttgtaccatccaccggcggcggcggcggcgccggtgccgggtgcggcgtcggtgccga 28773247

                               
Query: 409      tgctggcgccgcagc 423
                 | ||||||||||||
Sbjct: 28773248 cggtggcgccgcagc 28773262



 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 70/80 (87%)
 Strand = Plus / Minus

                                                                            
Query: 236      gcactcggcggggacgcccttggcgacgcgcttggggtcagtgcagtagttgtagatcat 295
                |||||||||||||  ||||| || ||  ||||||| ||||||||||||||||||||||||
Sbjct: 28750683 gcactcggcgggggtgccctgggggaaccgcttggcgtcagtgcagtagttgtagatcat 28750624

                                    
Query: 296      gtaattgctctgcacccacc 315
                | | || |||||||||||||
Sbjct: 28750623 gaacttcctctgcacccacc 28750604



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>dbj|AP005445.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0028E05
          Length = 157631

 Score =  188 bits (95), Expect = 1e-44
 Identities = 170/195 (87%)
 Strand = Plus / Plus

                                                                         
Query: 229   acatggagcactcggcggggacgcccttggcgacgcgcttggggtcagtgcagtagttgt 288
             ||||||||||||||||||||||||||| || || ||||||||| || |||||||||||||
Sbjct: 80843 acatggagcactcggcggggacgccctgggggaagcgcttgggatcggtgcagtagttgt 80902

                                                                         
Query: 289   agatcatgtaattgctctgcacccaccgcatccgctgctgcagcgtcaggtccagctcct 348
             |||||||||| |||||||||||||||||||||||||||||| |||| ||||| |||||||
Sbjct: 80903 agatcatgtacttgctctgcacccaccgcatccgctgctgccgcgtgaggtcgagctcct 80962

                                                                         
Query: 349   ggttgtaccactcgccggccgcgccggaagcgcccgtgcccggggccgcttccgtgccca 408
             ||||||||||  | ||||| ||| |||  ||||| ||||| || || || || ||||| |
Sbjct: 80963 ggttgtaccatccaccggcggcggcggcggcgccggtgccgggtgcggcgtcggtgccga 81022

                            
Query: 409   tgctggcgccgcagc 423
              | ||||||||||||
Sbjct: 81023 cggtggcgccgcagc 81037



 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 70/80 (87%)
 Strand = Plus / Minus

                                                                         
Query: 236   gcactcggcggggacgcccttggcgacgcgcttggggtcagtgcagtagttgtagatcat 295
             |||||||||||||  ||||| || ||  ||||||| ||||||||||||||||||||||||
Sbjct: 58458 gcactcggcgggggtgccctgggggaaccgcttggcgtcagtgcagtagttgtagatcat 58399

                                 
Query: 296   gtaattgctctgcacccacc 315
             | | || |||||||||||||
Sbjct: 58398 gaacttcctctgcacccacc 58379



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>dbj|AK105513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-127-F01, full
           insert sequence
          Length = 1253

 Score =  188 bits (95), Expect = 1e-44
 Identities = 170/195 (87%)
 Strand = Plus / Minus

                                                                       
Query: 229 acatggagcactcggcggggacgcccttggcgacgcgcttggggtcagtgcagtagttgt 288
           ||||||||||||||||||||||||||| || || ||||||||| || |||||||||||||
Sbjct: 989 acatggagcactcggcggggacgccctgggggaagcgcttgggatcggtgcagtagttgt 930

                                                                       
Query: 289 agatcatgtaattgctctgcacccaccgcatccgctgctgcagcgtcaggtccagctcct 348
           |||||||||| |||||||||||||||||||||||||||||| |||| ||||| |||||||
Sbjct: 929 agatcatgtacttgctctgcacccaccgcatccgctgctgccgcgtgaggtcgagctcct 870

                                                                       
Query: 349 ggttgtaccactcgccggccgcgccggaagcgcccgtgcccggggccgcttccgtgccca 408
           ||||||||||  | ||||| ||| |||  ||||| ||||| || || || || ||||| |
Sbjct: 869 ggttgtaccatccaccggcggcggcggcggcgccggtgccgggtgcggcgtcggtgccga 810

                          
Query: 409 tgctggcgccgcagc 423
            | ||||||||||||
Sbjct: 809 cggtggcgccgcagc 795



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>gb|AY103775.1| Zea mays PCO076979 mRNA sequence
          Length = 1495

 Score =  145 bits (73), Expect = 1e-31
 Identities = 97/105 (92%)
 Strand = Plus / Minus

                                                                       
Query: 263 gcgcttggggtcagtgcagtagttgtagatcatgtaattgctctgcacccaccgcatccg 322
           |||||||||||| ||||||||||||||||||||||| |||| ||||||||| ||||||||
Sbjct: 995 gcgcttggggtcggtgcagtagttgtagatcatgtacttgcgctgcacccagcgcatccg 936

                                                        
Query: 323 ctgctgcagcgtcaggtccagctcctggttgtaccactcgccggc 367
           ||||||||| || ||||||||||||||||||||||| || |||||
Sbjct: 935 ctgctgcagggtgaggtccagctcctggttgtaccagtccccggc 891



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>gb|AY023463.1| Oryza sativa microsatellite MRG5788 containing (TCG)X8, closest to
           marker R11, genomic sequence
          Length = 224

 Score =  115 bits (58), Expect = 1e-22
 Identities = 76/82 (92%)
 Strand = Plus / Minus

                                                                       
Query: 229 acatggagcactcggcggggacgcccttggcgacgcgcttggggtcagtgcagtagttgt 288
           ||||||||||||||||||||||||||| || || ||||||||| || |||||||||||||
Sbjct: 82  acatggagcactcggcggggacgccctgggggaagcgcttgggatcggtgcagtagttgt 23

                                 
Query: 289 agatcatgtaattgctctgcac 310
           |||||||||| |||||||||||
Sbjct: 22  agatcatgtacttgctctgcac 1



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>emb|AJ295943.1|FPR295943 Festuca pratensis mRNA for Xet1 protein
          Length = 1187

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 75/84 (89%)
 Strand = Plus / Minus

                                                                       
Query: 236 gcactcggcggggacgcccttggcgacgcgcttggggtcagtgcagtagttgtagatcat 295
           |||||||||||||| |||||  || |||||||||||||| ||||||||||||||||||||
Sbjct: 975 gcactcggcggggaggccctctgctacgcgcttggggtcggtgcagtagttgtagatcat 916

                                   
Query: 296 gtaattgctctgcacccaccgcat 319
           | | || ||||||||||| |||||
Sbjct: 915 gaacttcctctgcacccagcgcat 892



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>emb|X93175.1|HVXETXEB H.vulgare mRNA for xyloglucan endotransglycosylase-like protein
           (XEB)
          Length = 1226

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 75/84 (89%)
 Strand = Plus / Minus

                                                                       
Query: 236 gcactcggcggggacgcccttggcgacgcgcttggggtcagtgcagtagttgtagatcat 295
           |||||||||||| |||||||  || || ||||||||||| ||||||||||||||||||||
Sbjct: 958 gcactcggcgggcacgccctgcgccacccgcttggggtcggtgcagtagttgtagatcat 899

                                   
Query: 296 gtaattgctctgcacccaccgcat 319
           | | || |||||||||||||||||
Sbjct: 898 gaacttcctctgcacccaccgcat 875



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>gb|AY589589.1| Triticum aestivum endotransglucosylase/hydrolase XTH5 mRNA,
           complete cds
          Length = 1056

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 74/84 (88%)
 Strand = Plus / Minus

                                                                       
Query: 236 gcactcggcggggacgcccttggcgacgcgcttggggtcagtgcagtagttgtagatcat 295
           ||||||||| || |||||||  || || ||||||||||| ||||||||||||||||||||
Sbjct: 855 gcactcggcaggcacgccctgcgccacccgcttggggtcggtgcagtagttgtagatcat 796

                                   
Query: 296 gtaattgctctgcacccaccgcat 319
           | | || |||||||||||||||||
Sbjct: 795 gaacttcctctgcacccaccgcat 772



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>gb|BT014685.1| Oryza sativa AK104912 mRNA sequence
          Length = 807

 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 70/80 (87%)
 Strand = Plus / Minus

                                                                       
Query: 236 gcactcggcggggacgcccttggcgacgcgcttggggtcagtgcagtagttgtagatcat 295
           |||||||||||||  ||||| || ||  ||||||| ||||||||||||||||||||||||
Sbjct: 795 gcactcggcgggggtgccctgggggaaccgcttggcgtcagtgcagtagttgtagatcat 736

                               
Query: 296 gtaattgctctgcacccacc 315
           | | || |||||||||||||
Sbjct: 735 gaacttcctctgcacccacc 716



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>dbj|AP003771.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0622F03
          Length = 170064

 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 70/80 (87%)
 Strand = Plus / Minus

                                                                          
Query: 236    gcactcggcggggacgcccttggcgacgcgcttggggtcagtgcagtagttgtagatcat 295
              |||||||||||||  ||||| || ||  ||||||| ||||||||||||||||||||||||
Sbjct: 151249 gcactcggcgggggtgccctgggggaaccgcttggcgtcagtgcagtagttgtagatcat 151190

                                  
Query: 296    gtaattgctctgcacccacc 315
              | | || |||||||||||||
Sbjct: 151189 gaacttcctctgcacccacc 151170



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>dbj|AK104912.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-C02, full
           insert sequence
          Length = 1208

 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 70/80 (87%)
 Strand = Plus / Minus

                                                                       
Query: 236 gcactcggcggggacgcccttggcgacgcgcttggggtcagtgcagtagttgtagatcat 295
           |||||||||||||  ||||| || ||  ||||||| ||||||||||||||||||||||||
Sbjct: 975 gcactcggcgggggtgccctgggggaaccgcttggcgtcagtgcagtagttgtagatcat 916

                               
Query: 296 gtaattgctctgcacccacc 315
           | | || |||||||||||||
Sbjct: 915 gaacttcctctgcacccacc 896



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>dbj|AK066125.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013059H08, full
           insert sequence
          Length = 1208

 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 70/80 (87%)
 Strand = Plus / Minus

                                                                       
Query: 236 gcactcggcggggacgcccttggcgacgcgcttggggtcagtgcagtagttgtagatcat 295
           |||||||||||||  ||||| || ||  ||||||| ||||||||||||||||||||||||
Sbjct: 975 gcactcggcgggggtgccctgggggaaccgcttggcgtcagtgcagtagttgtagatcat 916

                               
Query: 296 gtaattgctctgcacccacc 315
           | | || |||||||||||||
Sbjct: 915 gaacttcctctgcacccacc 896



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>dbj|AK058291.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-E08, full
           insert sequence
          Length = 634

 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 70/80 (87%)
 Strand = Plus / Minus

                                                                       
Query: 236 gcactcggcggggacgcccttggcgacgcgcttggggtcagtgcagtagttgtagatcat 295
           |||||||||||||  ||||| || ||  ||||||| ||||||||||||||||||||||||
Sbjct: 401 gcactcggcgggggtgccctgggggaaccgcttggcgtcagtgcagtagttgtagatcat 342

                               
Query: 296 gtaattgctctgcacccacc 315
           | | || |||||||||||||
Sbjct: 341 gaacttcctctgcacccacc 322



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>gb|AY103891.1| Zea mays PCO065722 mRNA sequence
          Length = 1280

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 72/84 (85%)
 Strand = Plus / Minus

                                                                       
Query: 236 gcactcggcggggacgcccttggcgacgcgcttggggtcagtgcagtagttgtagatcat 295
           |||||||||||| |||||||  | || |||||||| ||| | ||||||||||||||||||
Sbjct: 995 gcactcggcgggcacgccctgcgggaagcgcttggcgtcggcgcagtagttgtagatcat 936

                                   
Query: 296 gtaattgctctgcacccaccgcat 319
           | | |||| ||||||||| |||||
Sbjct: 935 gaacttgcgctgcacccagcgcat 912



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>gb|BT019084.1| Zea mays clone Contig673.F mRNA sequence
          Length = 977

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 50/56 (89%)
 Strand = Plus / Plus

                                                                   
Query: 264 cgcttggggtcagtgcagtagttgtagatcatgtaattgctctgcacccaccgcat 319
           ||||||| ||| ||||||||||||||||||||| | || ||||||||||| |||||
Sbjct: 263 cgcttggcgtcggtgcagtagttgtagatcatgaacttcctctgcacccagcgcat 318



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>gb|AY106776.1| Zea mays PCO076978 mRNA sequence
          Length = 974

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 50/56 (89%)
 Strand = Plus / Minus

                                                                   
Query: 264 cgcttggggtcagtgcagtagttgtagatcatgtaattgctctgcacccaccgcat 319
           ||||||| ||| ||||||||||||||||||||| | || ||||||||||| |||||
Sbjct: 941 cgcttggcgtcggtgcagtagttgtagatcatgaacttcctctgcacccagcgcat 886



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>dbj|AB196977.1| Sagittaria pygmaea SpXTH4 mRNA for xyloglucan
            endotransglucosylase/hydrolase, complete cds
          Length = 1181

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 44/49 (89%)
 Strand = Plus / Minus

                                                             
Query: 276  gtgcagtagttgtagatcatgtaattgctctgcacccaccgcatccgct 324
            ||||||||||||||||||||||  |||| ||||||||| ||||| ||||
Sbjct: 1061 gtgcagtagttgtagatcatgtggttgcgctgcacccagcgcatgcgct 1013



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>gb|DQ100340.1| Eucalyptus globulus putative xyloglucan
           endotransglycosylase/hydrolase (XTH4) mRNA, partial cds
          Length = 608

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 46/52 (88%)
 Strand = Plus / Minus

                                                               
Query: 263 gcgcttggggtcagtgcagtagttgtagatcatgtaattgctctgcacccac 314
           |||||||| ||| | |||||||||||| |||||||||||  |||||||||||
Sbjct: 398 gcgcttggtgtcggcgcagtagttgtatatcatgtaattcttctgcacccac 347



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>dbj|AB083025.1| Glycine max mRNA for syringolide-induced protein 19-1-5, complete
           cds
          Length = 1221

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                      
Query: 272 gtcagtgcagtagttgtagatcatgtaattgctctgcacccac 314
           ||||| |||||| |||||||||||||||||  |||||||||||
Sbjct: 913 gtcagagcagtaattgtagatcatgtaattcttctgcacccac 871



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>gb|AY476737.1| Gossypium hirsutum XET mRNA, partial sequence
          Length = 765

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                 
Query: 264 cgcttggggtcagtgcagtagttgtagatcatgtaatt 301
           ||||||| |||||||||||| ||||| |||||||||||
Sbjct: 519 cgcttggtgtcagtgcagtaattgtaaatcatgtaatt 482



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>gb|AF223420.1|AF223420 Asparagus officinalis xyloglucan endotransglycosylase XET2 (AoXET2)
           mRNA, complete cds
          Length = 1375

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                     
Query: 272 gtcagtgcagtagttgtagatcatgtaattgctctgcaccca 313
           ||||| ||| ||||||||||||||||||||  ||||||||||
Sbjct: 866 gtcagcgcaatagttgtagatcatgtaattcttctgcaccca 825



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>emb|AJ130885.1|FSY130885 Fagus sylvatica mRNA for xyloglucan endotransglycosylase 1
          Length = 1223

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 45/52 (86%)
 Strand = Plus / Minus

                                                               
Query: 263 gcgcttggggtcagtgcagtagttgtagatcatgtaattgctctgcacccac 314
           |||||||| ||| ||||| ||||| || |||||||||||  |||||||||||
Sbjct: 874 gcgcttggtgtctgtgcaatagttataaatcatgtaatttttctgcacccac 823



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>emb|AJ555155.1|CSA555155 Cucumis sativus XTH3 gene for putative xyloglucan
            endotransglycosylase, exons 1-3, clone 4
          Length = 3074

 Score = 46.1 bits (23), Expect = 0.092
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 272  gtcagtgcagtagttgtagatcatgta 298
            |||||||||||| ||||||||||||||
Sbjct: 2636 gtcagtgcagtaattgtagatcatgta 2610



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>emb|AJ555126.1|CSA555126 Cucumis sativus mRNA for putative xyloglucan endotransglycosylase
           (xth3 gene)
          Length = 1038

 Score = 46.1 bits (23), Expect = 0.092
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 272 gtcagtgcagtagttgtagatcatgta 298
           |||||||||||| ||||||||||||||
Sbjct: 846 gtcagtgcagtaattgtagatcatgta 820



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>gb|AY105365.1| Zea mays PCO092487 mRNA sequence
          Length = 1253

 Score = 46.1 bits (23), Expect = 0.092
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 276 gtgcagtagttgtagatcatgta 298
           |||||||||||||||||||||||
Sbjct: 898 gtgcagtagttgtagatcatgta 876



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>gb|U15964.1|ZMU15964 Zea mays xyloglucan endo-transglycosylase homolog gene, complete
           cds
          Length = 1827

 Score = 46.1 bits (23), Expect = 0.092
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 276 gtgcagtagttgtagatcatgta 298
           |||||||||||||||||||||||
Sbjct: 913 gtgcagtagttgtagatcatgta 891



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>gb|U15781.1|ZMU15781 Zea mays xyloglucan endo-transglycosylase homolog mRNA, complete
           cds
          Length = 1221

 Score = 46.1 bits (23), Expect = 0.092
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 276 gtgcagtagttgtagatcatgta 298
           |||||||||||||||||||||||
Sbjct: 905 gtgcagtagttgtagatcatgta 883



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>ref|XM_473787.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 882

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 277 tgcagtagttgtagatcatgta 298
           ||||||||||||||||||||||
Sbjct: 829 tgcagtagttgtagatcatgta 808



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>ref|XM_417762.1| PREDICTED: Gallus gallus similar to axonemal dynein light chain;
           inner dynein arm, homolog of clamydomonas (LOC419615),
           mRNA
          Length = 1307

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 320 ccgctgctgcagcgtcaggtccagct 345
           ||||||||||||| ||||||||||||
Sbjct: 336 ccgctgctgcagcttcaggtccagct 311



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>ref|XM_607493.2| PREDICTED: Bos taurus similar to dynein, axonemal, light
           intermediate polypeptide 1 (LOC529053), mRNA
          Length = 849

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 320 ccgctgctgcagcgtcaggtccagct 345
           ||||||||||||| ||||||||||||
Sbjct: 390 ccgctgctgcagcttcaggtccagct 365



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>ref|XM_539590.2| PREDICTED: Canis familiaris similar to axonemal dynein light chain
           (LOC482473), mRNA
          Length = 842

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 320 ccgctgctgcagcgtcaggtccagct 345
           ||||||||||||| ||||||||||||
Sbjct: 339 ccgctgctgcagcttcaggtccagct 314



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>gb|AY365421.1| Sesamum indicum xyloglucan endotransglycosylase mRNA, partial cds
          Length = 494

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 276 gtgcagtagttgtagatcatgt 297
           ||||||||||||||||||||||
Sbjct: 491 gtgcagtagttgtagatcatgt 470



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>emb|X93173.1|HVXETPM5 H.vulgare mRNA for xyloglucan endotransglycosylase-like protein
           (PM5)
          Length = 1188

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 61/74 (82%)
 Strand = Plus / Minus

                                                                       
Query: 233 ggagcactcggcggggacgcccttggcgacgcgcttggggtcagtgcagtagttgtagat 292
           ||||||||||||||||| ||| |||| || ||||  |  ||| |||||||||| ||||  
Sbjct: 904 ggagcactcggcggggaagccgttggggaagcgccagccgtcggtgcagtagtcgtagga 845

                         
Query: 293 catgtaattgctct 306
           |||||| |||||||
Sbjct: 844 catgtacttgctct 831



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>gb|AY144593.1| Malus x domestica xyloglucan endotransglycosylase (XET01) mRNA,
           complete cds
          Length = 1268

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 271 ggtcagtgcagtagttgtagat 292
           ||||||||||||||||||||||
Sbjct: 889 ggtcagtgcagtagttgtagat 868



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>emb|AL606638.2|OSJN00077 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0041A02,
              complete sequence
          Length = 166804

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 277    tgcagtagttgtagatcatgta 298
              ||||||||||||||||||||||
Sbjct: 141164 tgcagtagttgtagatcatgta 141185



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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                         
Query: 382     ccgtgcccggggccgcttccgtgccc 407
               |||||||||||||||| |||||||||
Sbjct: 1078593 ccgtgcccggggccgcatccgtgccc 1078618



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 277      tgcagtagttgtagatcatgta 298
                ||||||||||||||||||||||
Sbjct: 30507787 tgcagtagttgtagatcatgta 30507808



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>dbj|AK063614.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-118-D08, full
           insert sequence
          Length = 1041

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 277 tgcagtagttgtagatcatgta 298
           ||||||||||||||||||||||
Sbjct: 892 tgcagtagttgtagatcatgta 871



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>gb|AY841854.1| Vigna radiata xyloglucan endotransglucosylase/hydrolase precursor
           (XTH1) mRNA, complete cds
          Length = 1112

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 272 gtcagtgcagtagttgtagat 292
           |||||||||||||||||||||
Sbjct: 813 gtcagtgcagtagttgtagat 793



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>gb|BC090193.1| Xenopus laevis cDNA clone MGC:85054 IMAGE:6327047, complete cds
          Length = 1785

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 103  tggtccttatttatcatacag 123
            |||||||||||||||||||||
Sbjct: 1462 tggtccttatttatcatacag 1442



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>dbj|AB086396.1| Vigna angularis VaXTH2 gene for xyloglucan
            endotransglucosylase/hydrolase, complete cds
          Length = 1712

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 272  gtcagtgcagtagttgtagat 292
            |||||||||||||||||||||
Sbjct: 1450 gtcagtgcagtagttgtagat 1430



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>gb|DQ279095.1| Rosa x borboniana xyloglucan endotransglucosylase hydrolase mRNA,
           complete cds
          Length = 1130

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 272 gtcagtgcagtagttgtagat 292
           |||||||||||||||||||||
Sbjct: 872 gtcagtgcagtagttgtagat 852



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>dbj|D16455.1|SOYEXT2 Soybean mRNA for endo-xyloglucan transferase, partial cds
          Length = 975

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 272 gtcagtgcagtagttgtagat 292
           |||||||||||||||||||||
Sbjct: 833 gtcagtgcagtagttgtagat 813



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>gb|AE014075.1| Escherichia coli CFT073, complete genome
          Length = 5231428

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 314     ccgcatccgctgctgcagcgtcag 337
               |||||||||||| |||||||||||
Sbjct: 2831690 ccgcatccgctgatgcagcgtcag 2831713



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>emb|AL590111.14| Human DNA sequence from clone RP11-570F3 on chromosome 10 Contains
            part of a novel gene (FLJ30499) and the 3' end of a novel
            gene (FLJ30450), complete sequence
          Length = 41069

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 98   ctcactggtccttatttatc 117
            ||||||||||||||||||||
Sbjct: 3262 ctcactggtccttatttatc 3243



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>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome
          Length = 4406967

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 365   ggccgcgccggaagcgcccg 384
             ||||||||||||||||||||
Sbjct: 70418 ggccgcgccggaagcgcccg 70437



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>gb|U00096.2| Escherichia coli K-12 MG1655, complete genome
          Length = 4639675

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 314     ccgcatccgctgctgcagcgtcag 337
               |||||||||||| |||||||||||
Sbjct: 2552164 ccgcatccgctgatgcagcgtcag 2552187



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>emb|BX640451.1| Bordetella bronchiseptica strain RB50, complete genome; segment 15/16
          Length = 343473

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 365    ggccgcgccggaagcgcccg 384
              ||||||||||||||||||||
Sbjct: 306799 ggccgcgccggaagcgcccg 306780



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>emb|BX640436.1| Bordetella parapertussis strain 12822, complete genome; segment 14/14
          Length = 255260

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 365   ggccgcgccggaagcgcccg 384
             ||||||||||||||||||||
Sbjct: 99170 ggccgcgccggaagcgcccg 99151



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>emb|BX640411.1| Bordetella pertussis strain Tohama I, complete genome; segment 1/12
          Length = 346359

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 365    ggccgcgccggaagcgcccg 384
              ||||||||||||||||||||
Sbjct: 284054 ggccgcgccggaagcgcccg 284073



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>emb|BX571768.19| Zebrafish DNA sequence from clone DKEYP-2C4 in linkage group 11,
             complete sequence
          Length = 111222

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 110   tatttatcatacagtacaat 129
             ||||||||||||||||||||
Sbjct: 36635 tatttatcatacagtacaat 36616



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>dbj|AP009048.1| Escherichia coli W3110 DNA, complete genome
          Length = 4646332

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 314     ccgcatccgctgctgcagcgtcag 337
               |||||||||||| |||||||||||
Sbjct: 2559588 ccgcatccgctgatgcagcgtcag 2559611



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>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 356     ccactcgccggccgcgccgg 375
               ||||||||||||||||||||
Sbjct: 3755216 ccactcgccggccgcgccgg 3755235



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>gb|CP000232.1| Moorella thermoacetica ATCC 39073, complete genome
          Length = 2628784

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 154    cccggccgtcttcctccggc 173
              ||||||||||||||||||||
Sbjct: 951280 cccggccgtcttcctccggc 951261



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>gb|AC148685.1| Macaca mulatta Major Histocompatibility Complex BAC MMU188J04, complete
             sequence
          Length = 166821

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 223   gggactacatggagcactcg 242
             ||||||||||||||||||||
Sbjct: 22059 gggactacatggagcactcg 22040



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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 300     ttgctctgcacccaccgcat 319
               ||||||||||||||||||||
Sbjct: 4951256 ttgctctgcacccaccgcat 4951237



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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 361     cgccggccgcgccggaagcgcccg 384
               |||||||||||||||| |||||||
Sbjct: 1467780 cgccggccgcgccggaggcgcccg 1467757



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>dbj|AP005903.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:B1012G11
          Length = 167168

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 300    ttgctctgcacccaccgcat 319
              ||||||||||||||||||||
Sbjct: 133788 ttgctctgcacccaccgcat 133769



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>dbj|AB046702.2| Aspergillus awamori AwabfA gene for alpha-L-arabinofuranosidase A,
           complete cds
          Length = 3291

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 310 cccaccgcatccgctgctgc 329
           ||||||||||||||||||||
Sbjct: 771 cccaccgcatccgctgctgc 790



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>dbj|AB085903.1| Aspergillus kawachii AkabfA gene for alpha-L-arabinofuranosidase A,
           complete cds
          Length = 3420

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 310 cccaccgcatccgctgctgc 329
           ||||||||||||||||||||
Sbjct: 603 cccaccgcatccgctgctgc 622



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>emb|X75413.1|ECHEMF E.coli orf1, orf3 and hemF gene for coproporphyrinogen III oxidase
          Length = 3382

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 314  ccgcatccgctgctgcagcgtcag 337
            |||||||||||| |||||||||||
Sbjct: 2229 ccgcatccgctgatgcagcgtcag 2252



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>dbj|AB086395.1| Vigna angularis VaXTH1 gene for xyloglucan
            endotransglucosylase/hydrolase, complete cds
          Length = 1913

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 273  tcagtgcagtagttgtagat 292
            ||||||||||||||||||||
Sbjct: 1610 tcagtgcagtagttgtagat 1591



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>gb|L46792.1|ACTXET Actinidia deliciosa clone AdXET-5 xyloglucan endotransglycosylase
           precursor (XET) mRNA, complete cds
          Length = 1178

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 273 tcagtgcagtagttgtagat 292
           ||||||||||||||||||||
Sbjct: 858 tcagtgcagtagttgtagat 839



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>dbj|D16458.1|VIREXT5 V.angularis mRNA for endo-xyloglucan transferase, complete cds
          Length = 1319

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 273 tcagtgcagtagttgtagat 292
           ||||||||||||||||||||
Sbjct: 999 tcagtgcagtagttgtagat 980


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,048,399
Number of Sequences: 3902068
Number of extensions: 3048399
Number of successful extensions: 57740
Number of sequences better than 10.0: 65
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 57150
Number of HSP's gapped (non-prelim): 591
length of query: 423
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 401
effective length of database: 17,147,199,772
effective search space: 6876027108572
effective search space used: 6876027108572
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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