| Clone Name | rbaet119c11 |
|---|---|
| Clone Library Name | barley_pub |
>emb|X93174.1|HVXETXEA H.vulgare mRNA for xyloglucan endotransglycosylase-like protein (XEA) Length = 1174 Score = 823 bits (415), Expect = 0.0 Identities = 421/423 (99%) Strand = Plus / Minus Query: 1 agaacagaacgagatgagacatatattacacacgatctgaacgtgacaaggagcaaacag 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1153 agaacagaacgagatgagacatatattacacacgatctgaacgtgacaaggagcaaacag 1094 Query: 61 aagaatctaccacccgctccatttcacattatcccccctcactggtccttatttatcata 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1093 aagaatctaccacccgctccatttcacattatcccccctcactggtccttatttatcata 1034 Query: 121 cagtacaatacagacgcccccatcttccctatccccggccgtcttcctccggcgatcgac 180 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 1033 cagtacaatacagacgcccccatcttccctatctccggccgtcttcctccggcgatcgac 974 Query: 181 gtatacacggacggtccaatgctaccttgcttttgatggacggggactacatggagcact 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 973 gtatacacggacggtccaatgctaccttgcttttgatggacggggactacatggagcact 914 Query: 241 cggcggggacgcccttggcgacgcgcttggggtcagtgcagtagttgtagatcatgtaat 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 913 cggcggggacgcccttggcgacgcgcttggggtcagtgcagtagttgtagatcatgtaat 854 Query: 301 tgctctgcacccaccgcatccgctgctgcagcgtcaggtccagctcctggttgtaccact 360 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 853 tgctctgtacccaccgcatccgctgctgcagcgtcaggtccagctcctggttgtaccact 794 Query: 361 cgccggccgcgccggaagcgcccgtgcccggggccgcttccgtgcccatgctggcgccgc 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 793 cgccggccgcgccggaagcgcccgtgcccggggccgcttccgtgcccatgctggcgccgc 734 Query: 421 agc 423 ||| Sbjct: 733 agc 731
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 188 bits (95), Expect = 1e-44 Identities = 170/195 (87%) Strand = Plus / Plus Query: 229 acatggagcactcggcggggacgcccttggcgacgcgcttggggtcagtgcagtagttgt 288 ||||||||||||||||||||||||||| || || ||||||||| || ||||||||||||| Sbjct: 28773068 acatggagcactcggcggggacgccctgggggaagcgcttgggatcggtgcagtagttgt 28773127 Query: 289 agatcatgtaattgctctgcacccaccgcatccgctgctgcagcgtcaggtccagctcct 348 |||||||||| |||||||||||||||||||||||||||||| |||| ||||| ||||||| Sbjct: 28773128 agatcatgtacttgctctgcacccaccgcatccgctgctgccgcgtgaggtcgagctcct 28773187 Query: 349 ggttgtaccactcgccggccgcgccggaagcgcccgtgcccggggccgcttccgtgccca 408 |||||||||| | ||||| ||| ||| ||||| ||||| || || || || ||||| | Sbjct: 28773188 ggttgtaccatccaccggcggcggcggcggcgccggtgccgggtgcggcgtcggtgccga 28773247 Query: 409 tgctggcgccgcagc 423 | |||||||||||| Sbjct: 28773248 cggtggcgccgcagc 28773262 Score = 79.8 bits (40), Expect = 7e-12 Identities = 70/80 (87%) Strand = Plus / Minus Query: 236 gcactcggcggggacgcccttggcgacgcgcttggggtcagtgcagtagttgtagatcat 295 ||||||||||||| ||||| || || ||||||| |||||||||||||||||||||||| Sbjct: 28750683 gcactcggcgggggtgccctgggggaaccgcttggcgtcagtgcagtagttgtagatcat 28750624 Query: 296 gtaattgctctgcacccacc 315 | | || ||||||||||||| Sbjct: 28750623 gaacttcctctgcacccacc 28750604
>dbj|AP005445.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0028E05 Length = 157631 Score = 188 bits (95), Expect = 1e-44 Identities = 170/195 (87%) Strand = Plus / Plus Query: 229 acatggagcactcggcggggacgcccttggcgacgcgcttggggtcagtgcagtagttgt 288 ||||||||||||||||||||||||||| || || ||||||||| || ||||||||||||| Sbjct: 80843 acatggagcactcggcggggacgccctgggggaagcgcttgggatcggtgcagtagttgt 80902 Query: 289 agatcatgtaattgctctgcacccaccgcatccgctgctgcagcgtcaggtccagctcct 348 |||||||||| |||||||||||||||||||||||||||||| |||| ||||| ||||||| Sbjct: 80903 agatcatgtacttgctctgcacccaccgcatccgctgctgccgcgtgaggtcgagctcct 80962 Query: 349 ggttgtaccactcgccggccgcgccggaagcgcccgtgcccggggccgcttccgtgccca 408 |||||||||| | ||||| ||| ||| ||||| ||||| || || || || ||||| | Sbjct: 80963 ggttgtaccatccaccggcggcggcggcggcgccggtgccgggtgcggcgtcggtgccga 81022 Query: 409 tgctggcgccgcagc 423 | |||||||||||| Sbjct: 81023 cggtggcgccgcagc 81037 Score = 79.8 bits (40), Expect = 7e-12 Identities = 70/80 (87%) Strand = Plus / Minus Query: 236 gcactcggcggggacgcccttggcgacgcgcttggggtcagtgcagtagttgtagatcat 295 ||||||||||||| ||||| || || ||||||| |||||||||||||||||||||||| Sbjct: 58458 gcactcggcgggggtgccctgggggaaccgcttggcgtcagtgcagtagttgtagatcat 58399 Query: 296 gtaattgctctgcacccacc 315 | | || ||||||||||||| Sbjct: 58398 gaacttcctctgcacccacc 58379
>dbj|AK105513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-127-F01, full insert sequence Length = 1253 Score = 188 bits (95), Expect = 1e-44 Identities = 170/195 (87%) Strand = Plus / Minus Query: 229 acatggagcactcggcggggacgcccttggcgacgcgcttggggtcagtgcagtagttgt 288 ||||||||||||||||||||||||||| || || ||||||||| || ||||||||||||| Sbjct: 989 acatggagcactcggcggggacgccctgggggaagcgcttgggatcggtgcagtagttgt 930 Query: 289 agatcatgtaattgctctgcacccaccgcatccgctgctgcagcgtcaggtccagctcct 348 |||||||||| |||||||||||||||||||||||||||||| |||| ||||| ||||||| Sbjct: 929 agatcatgtacttgctctgcacccaccgcatccgctgctgccgcgtgaggtcgagctcct 870 Query: 349 ggttgtaccactcgccggccgcgccggaagcgcccgtgcccggggccgcttccgtgccca 408 |||||||||| | ||||| ||| ||| ||||| ||||| || || || || ||||| | Sbjct: 869 ggttgtaccatccaccggcggcggcggcggcgccggtgccgggtgcggcgtcggtgccga 810 Query: 409 tgctggcgccgcagc 423 | |||||||||||| Sbjct: 809 cggtggcgccgcagc 795
>gb|AY103775.1| Zea mays PCO076979 mRNA sequence Length = 1495 Score = 145 bits (73), Expect = 1e-31 Identities = 97/105 (92%) Strand = Plus / Minus Query: 263 gcgcttggggtcagtgcagtagttgtagatcatgtaattgctctgcacccaccgcatccg 322 |||||||||||| ||||||||||||||||||||||| |||| ||||||||| |||||||| Sbjct: 995 gcgcttggggtcggtgcagtagttgtagatcatgtacttgcgctgcacccagcgcatccg 936 Query: 323 ctgctgcagcgtcaggtccagctcctggttgtaccactcgccggc 367 ||||||||| || ||||||||||||||||||||||| || ||||| Sbjct: 935 ctgctgcagggtgaggtccagctcctggttgtaccagtccccggc 891
>gb|AY023463.1| Oryza sativa microsatellite MRG5788 containing (TCG)X8, closest to marker R11, genomic sequence Length = 224 Score = 115 bits (58), Expect = 1e-22 Identities = 76/82 (92%) Strand = Plus / Minus Query: 229 acatggagcactcggcggggacgcccttggcgacgcgcttggggtcagtgcagtagttgt 288 ||||||||||||||||||||||||||| || || ||||||||| || ||||||||||||| Sbjct: 82 acatggagcactcggcggggacgccctgggggaagcgcttgggatcggtgcagtagttgt 23 Query: 289 agatcatgtaattgctctgcac 310 |||||||||| ||||||||||| Sbjct: 22 agatcatgtacttgctctgcac 1
>emb|AJ295943.1|FPR295943 Festuca pratensis mRNA for Xet1 protein Length = 1187 Score = 95.6 bits (48), Expect = 1e-16 Identities = 75/84 (89%) Strand = Plus / Minus Query: 236 gcactcggcggggacgcccttggcgacgcgcttggggtcagtgcagtagttgtagatcat 295 |||||||||||||| ||||| || |||||||||||||| |||||||||||||||||||| Sbjct: 975 gcactcggcggggaggccctctgctacgcgcttggggtcggtgcagtagttgtagatcat 916 Query: 296 gtaattgctctgcacccaccgcat 319 | | || ||||||||||| ||||| Sbjct: 915 gaacttcctctgcacccagcgcat 892
>emb|X93175.1|HVXETXEB H.vulgare mRNA for xyloglucan endotransglycosylase-like protein (XEB) Length = 1226 Score = 95.6 bits (48), Expect = 1e-16 Identities = 75/84 (89%) Strand = Plus / Minus Query: 236 gcactcggcggggacgcccttggcgacgcgcttggggtcagtgcagtagttgtagatcat 295 |||||||||||| ||||||| || || ||||||||||| |||||||||||||||||||| Sbjct: 958 gcactcggcgggcacgccctgcgccacccgcttggggtcggtgcagtagttgtagatcat 899 Query: 296 gtaattgctctgcacccaccgcat 319 | | || ||||||||||||||||| Sbjct: 898 gaacttcctctgcacccaccgcat 875
>gb|AY589589.1| Triticum aestivum endotransglucosylase/hydrolase XTH5 mRNA, complete cds Length = 1056 Score = 87.7 bits (44), Expect = 3e-14 Identities = 74/84 (88%) Strand = Plus / Minus Query: 236 gcactcggcggggacgcccttggcgacgcgcttggggtcagtgcagtagttgtagatcat 295 ||||||||| || ||||||| || || ||||||||||| |||||||||||||||||||| Sbjct: 855 gcactcggcaggcacgccctgcgccacccgcttggggtcggtgcagtagttgtagatcat 796 Query: 296 gtaattgctctgcacccaccgcat 319 | | || ||||||||||||||||| Sbjct: 795 gaacttcctctgcacccaccgcat 772
>gb|BT014685.1| Oryza sativa AK104912 mRNA sequence Length = 807 Score = 79.8 bits (40), Expect = 7e-12 Identities = 70/80 (87%) Strand = Plus / Minus Query: 236 gcactcggcggggacgcccttggcgacgcgcttggggtcagtgcagtagttgtagatcat 295 ||||||||||||| ||||| || || ||||||| |||||||||||||||||||||||| Sbjct: 795 gcactcggcgggggtgccctgggggaaccgcttggcgtcagtgcagtagttgtagatcat 736 Query: 296 gtaattgctctgcacccacc 315 | | || ||||||||||||| Sbjct: 735 gaacttcctctgcacccacc 716
>dbj|AP003771.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0622F03 Length = 170064 Score = 79.8 bits (40), Expect = 7e-12 Identities = 70/80 (87%) Strand = Plus / Minus Query: 236 gcactcggcggggacgcccttggcgacgcgcttggggtcagtgcagtagttgtagatcat 295 ||||||||||||| ||||| || || ||||||| |||||||||||||||||||||||| Sbjct: 151249 gcactcggcgggggtgccctgggggaaccgcttggcgtcagtgcagtagttgtagatcat 151190 Query: 296 gtaattgctctgcacccacc 315 | | || ||||||||||||| Sbjct: 151189 gaacttcctctgcacccacc 151170
>dbj|AK104912.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-C02, full insert sequence Length = 1208 Score = 79.8 bits (40), Expect = 7e-12 Identities = 70/80 (87%) Strand = Plus / Minus Query: 236 gcactcggcggggacgcccttggcgacgcgcttggggtcagtgcagtagttgtagatcat 295 ||||||||||||| ||||| || || ||||||| |||||||||||||||||||||||| Sbjct: 975 gcactcggcgggggtgccctgggggaaccgcttggcgtcagtgcagtagttgtagatcat 916 Query: 296 gtaattgctctgcacccacc 315 | | || ||||||||||||| Sbjct: 915 gaacttcctctgcacccacc 896
>dbj|AK066125.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013059H08, full insert sequence Length = 1208 Score = 79.8 bits (40), Expect = 7e-12 Identities = 70/80 (87%) Strand = Plus / Minus Query: 236 gcactcggcggggacgcccttggcgacgcgcttggggtcagtgcagtagttgtagatcat 295 ||||||||||||| ||||| || || ||||||| |||||||||||||||||||||||| Sbjct: 975 gcactcggcgggggtgccctgggggaaccgcttggcgtcagtgcagtagttgtagatcat 916 Query: 296 gtaattgctctgcacccacc 315 | | || ||||||||||||| Sbjct: 915 gaacttcctctgcacccacc 896
>dbj|AK058291.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-E08, full insert sequence Length = 634 Score = 79.8 bits (40), Expect = 7e-12 Identities = 70/80 (87%) Strand = Plus / Minus Query: 236 gcactcggcggggacgcccttggcgacgcgcttggggtcagtgcagtagttgtagatcat 295 ||||||||||||| ||||| || || ||||||| |||||||||||||||||||||||| Sbjct: 401 gcactcggcgggggtgccctgggggaaccgcttggcgtcagtgcagtagttgtagatcat 342 Query: 296 gtaattgctctgcacccacc 315 | | || ||||||||||||| Sbjct: 341 gaacttcctctgcacccacc 322
>gb|AY103891.1| Zea mays PCO065722 mRNA sequence Length = 1280 Score = 71.9 bits (36), Expect = 2e-09 Identities = 72/84 (85%) Strand = Plus / Minus Query: 236 gcactcggcggggacgcccttggcgacgcgcttggggtcagtgcagtagttgtagatcat 295 |||||||||||| ||||||| | || |||||||| ||| | |||||||||||||||||| Sbjct: 995 gcactcggcgggcacgccctgcgggaagcgcttggcgtcggcgcagtagttgtagatcat 936 Query: 296 gtaattgctctgcacccaccgcat 319 | | |||| ||||||||| ||||| Sbjct: 935 gaacttgcgctgcacccagcgcat 912
>gb|BT019084.1| Zea mays clone Contig673.F mRNA sequence Length = 977 Score = 63.9 bits (32), Expect = 4e-07 Identities = 50/56 (89%) Strand = Plus / Plus Query: 264 cgcttggggtcagtgcagtagttgtagatcatgtaattgctctgcacccaccgcat 319 ||||||| ||| ||||||||||||||||||||| | || ||||||||||| ||||| Sbjct: 263 cgcttggcgtcggtgcagtagttgtagatcatgaacttcctctgcacccagcgcat 318
>gb|AY106776.1| Zea mays PCO076978 mRNA sequence Length = 974 Score = 63.9 bits (32), Expect = 4e-07 Identities = 50/56 (89%) Strand = Plus / Minus Query: 264 cgcttggggtcagtgcagtagttgtagatcatgtaattgctctgcacccaccgcat 319 ||||||| ||| ||||||||||||||||||||| | || ||||||||||| ||||| Sbjct: 941 cgcttggcgtcggtgcagtagttgtagatcatgaacttcctctgcacccagcgcat 886
>dbj|AB196977.1| Sagittaria pygmaea SpXTH4 mRNA for xyloglucan endotransglucosylase/hydrolase, complete cds Length = 1181 Score = 58.0 bits (29), Expect = 2e-05 Identities = 44/49 (89%) Strand = Plus / Minus Query: 276 gtgcagtagttgtagatcatgtaattgctctgcacccaccgcatccgct 324 |||||||||||||||||||||| |||| ||||||||| ||||| |||| Sbjct: 1061 gtgcagtagttgtagatcatgtggttgcgctgcacccagcgcatgcgct 1013
>gb|DQ100340.1| Eucalyptus globulus putative xyloglucan endotransglycosylase/hydrolase (XTH4) mRNA, partial cds Length = 608 Score = 56.0 bits (28), Expect = 1e-04 Identities = 46/52 (88%) Strand = Plus / Minus Query: 263 gcgcttggggtcagtgcagtagttgtagatcatgtaattgctctgcacccac 314 |||||||| ||| | |||||||||||| ||||||||||| ||||||||||| Sbjct: 398 gcgcttggtgtcggcgcagtagttgtatatcatgtaattcttctgcacccac 347
>dbj|AB083025.1| Glycine max mRNA for syringolide-induced protein 19-1-5, complete cds Length = 1221 Score = 54.0 bits (27), Expect = 4e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 272 gtcagtgcagtagttgtagatcatgtaattgctctgcacccac 314 ||||| |||||| ||||||||||||||||| ||||||||||| Sbjct: 913 gtcagagcagtaattgtagatcatgtaattcttctgcacccac 871
>gb|AY476737.1| Gossypium hirsutum XET mRNA, partial sequence Length = 765 Score = 52.0 bits (26), Expect = 0.001 Identities = 35/38 (92%) Strand = Plus / Minus Query: 264 cgcttggggtcagtgcagtagttgtagatcatgtaatt 301 ||||||| |||||||||||| ||||| ||||||||||| Sbjct: 519 cgcttggtgtcagtgcagtaattgtaaatcatgtaatt 482
>gb|AF223420.1|AF223420 Asparagus officinalis xyloglucan endotransglycosylase XET2 (AoXET2) mRNA, complete cds Length = 1375 Score = 52.0 bits (26), Expect = 0.001 Identities = 38/42 (90%) Strand = Plus / Minus Query: 272 gtcagtgcagtagttgtagatcatgtaattgctctgcaccca 313 ||||| ||| |||||||||||||||||||| |||||||||| Sbjct: 866 gtcagcgcaatagttgtagatcatgtaattcttctgcaccca 825
>emb|AJ130885.1|FSY130885 Fagus sylvatica mRNA for xyloglucan endotransglycosylase 1 Length = 1223 Score = 48.1 bits (24), Expect = 0.023 Identities = 45/52 (86%) Strand = Plus / Minus Query: 263 gcgcttggggtcagtgcagtagttgtagatcatgtaattgctctgcacccac 314 |||||||| ||| ||||| ||||| || ||||||||||| ||||||||||| Sbjct: 874 gcgcttggtgtctgtgcaatagttataaatcatgtaatttttctgcacccac 823
>emb|AJ555155.1|CSA555155 Cucumis sativus XTH3 gene for putative xyloglucan endotransglycosylase, exons 1-3, clone 4 Length = 3074 Score = 46.1 bits (23), Expect = 0.092 Identities = 26/27 (96%) Strand = Plus / Minus Query: 272 gtcagtgcagtagttgtagatcatgta 298 |||||||||||| |||||||||||||| Sbjct: 2636 gtcagtgcagtaattgtagatcatgta 2610
>emb|AJ555126.1|CSA555126 Cucumis sativus mRNA for putative xyloglucan endotransglycosylase (xth3 gene) Length = 1038 Score = 46.1 bits (23), Expect = 0.092 Identities = 26/27 (96%) Strand = Plus / Minus Query: 272 gtcagtgcagtagttgtagatcatgta 298 |||||||||||| |||||||||||||| Sbjct: 846 gtcagtgcagtaattgtagatcatgta 820
>gb|AY105365.1| Zea mays PCO092487 mRNA sequence Length = 1253 Score = 46.1 bits (23), Expect = 0.092 Identities = 23/23 (100%) Strand = Plus / Minus Query: 276 gtgcagtagttgtagatcatgta 298 ||||||||||||||||||||||| Sbjct: 898 gtgcagtagttgtagatcatgta 876
>gb|U15964.1|ZMU15964 Zea mays xyloglucan endo-transglycosylase homolog gene, complete cds Length = 1827 Score = 46.1 bits (23), Expect = 0.092 Identities = 23/23 (100%) Strand = Plus / Minus Query: 276 gtgcagtagttgtagatcatgta 298 ||||||||||||||||||||||| Sbjct: 913 gtgcagtagttgtagatcatgta 891
>gb|U15781.1|ZMU15781 Zea mays xyloglucan endo-transglycosylase homolog mRNA, complete cds Length = 1221 Score = 46.1 bits (23), Expect = 0.092 Identities = 23/23 (100%) Strand = Plus / Minus Query: 276 gtgcagtagttgtagatcatgta 298 ||||||||||||||||||||||| Sbjct: 905 gtgcagtagttgtagatcatgta 883
>ref|XM_473787.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 882 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 277 tgcagtagttgtagatcatgta 298 |||||||||||||||||||||| Sbjct: 829 tgcagtagttgtagatcatgta 808
>ref|XM_417762.1| PREDICTED: Gallus gallus similar to axonemal dynein light chain; inner dynein arm, homolog of clamydomonas (LOC419615), mRNA Length = 1307 Score = 44.1 bits (22), Expect = 0.36 Identities = 25/26 (96%) Strand = Plus / Minus Query: 320 ccgctgctgcagcgtcaggtccagct 345 ||||||||||||| |||||||||||| Sbjct: 336 ccgctgctgcagcttcaggtccagct 311
>ref|XM_607493.2| PREDICTED: Bos taurus similar to dynein, axonemal, light intermediate polypeptide 1 (LOC529053), mRNA Length = 849 Score = 44.1 bits (22), Expect = 0.36 Identities = 25/26 (96%) Strand = Plus / Minus Query: 320 ccgctgctgcagcgtcaggtccagct 345 ||||||||||||| |||||||||||| Sbjct: 390 ccgctgctgcagcttcaggtccagct 365
>ref|XM_539590.2| PREDICTED: Canis familiaris similar to axonemal dynein light chain (LOC482473), mRNA Length = 842 Score = 44.1 bits (22), Expect = 0.36 Identities = 25/26 (96%) Strand = Plus / Minus Query: 320 ccgctgctgcagcgtcaggtccagct 345 ||||||||||||| |||||||||||| Sbjct: 339 ccgctgctgcagcttcaggtccagct 314
>gb|AY365421.1| Sesamum indicum xyloglucan endotransglycosylase mRNA, partial cds Length = 494 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 276 gtgcagtagttgtagatcatgt 297 |||||||||||||||||||||| Sbjct: 491 gtgcagtagttgtagatcatgt 470
>emb|X93173.1|HVXETPM5 H.vulgare mRNA for xyloglucan endotransglycosylase-like protein (PM5) Length = 1188 Score = 44.1 bits (22), Expect = 0.36 Identities = 61/74 (82%) Strand = Plus / Minus Query: 233 ggagcactcggcggggacgcccttggcgacgcgcttggggtcagtgcagtagttgtagat 292 ||||||||||||||||| ||| |||| || |||| | ||| |||||||||| |||| Sbjct: 904 ggagcactcggcggggaagccgttggggaagcgccagccgtcggtgcagtagtcgtagga 845 Query: 293 catgtaattgctct 306 |||||| ||||||| Sbjct: 844 catgtacttgctct 831
>gb|AY144593.1| Malus x domestica xyloglucan endotransglycosylase (XET01) mRNA, complete cds Length = 1268 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 271 ggtcagtgcagtagttgtagat 292 |||||||||||||||||||||| Sbjct: 889 ggtcagtgcagtagttgtagat 868
>emb|AL606638.2|OSJN00077 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0041A02, complete sequence Length = 166804 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 277 tgcagtagttgtagatcatgta 298 |||||||||||||||||||||| Sbjct: 141164 tgcagtagttgtagatcatgta 141185
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 44.1 bits (22), Expect = 0.36 Identities = 25/26 (96%) Strand = Plus / Plus Query: 382 ccgtgcccggggccgcttccgtgccc 407 |||||||||||||||| ||||||||| Sbjct: 1078593 ccgtgcccggggccgcatccgtgccc 1078618
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 277 tgcagtagttgtagatcatgta 298 |||||||||||||||||||||| Sbjct: 30507787 tgcagtagttgtagatcatgta 30507808
>dbj|AK063614.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-118-D08, full insert sequence Length = 1041 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 277 tgcagtagttgtagatcatgta 298 |||||||||||||||||||||| Sbjct: 892 tgcagtagttgtagatcatgta 871
>gb|AY841854.1| Vigna radiata xyloglucan endotransglucosylase/hydrolase precursor (XTH1) mRNA, complete cds Length = 1112 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 272 gtcagtgcagtagttgtagat 292 ||||||||||||||||||||| Sbjct: 813 gtcagtgcagtagttgtagat 793
>gb|BC090193.1| Xenopus laevis cDNA clone MGC:85054 IMAGE:6327047, complete cds Length = 1785 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 103 tggtccttatttatcatacag 123 ||||||||||||||||||||| Sbjct: 1462 tggtccttatttatcatacag 1442
>dbj|AB086396.1| Vigna angularis VaXTH2 gene for xyloglucan endotransglucosylase/hydrolase, complete cds Length = 1712 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 272 gtcagtgcagtagttgtagat 292 ||||||||||||||||||||| Sbjct: 1450 gtcagtgcagtagttgtagat 1430
>gb|DQ279095.1| Rosa x borboniana xyloglucan endotransglucosylase hydrolase mRNA, complete cds Length = 1130 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 272 gtcagtgcagtagttgtagat 292 ||||||||||||||||||||| Sbjct: 872 gtcagtgcagtagttgtagat 852
>dbj|D16455.1|SOYEXT2 Soybean mRNA for endo-xyloglucan transferase, partial cds Length = 975 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 272 gtcagtgcagtagttgtagat 292 ||||||||||||||||||||| Sbjct: 833 gtcagtgcagtagttgtagat 813
>gb|AE014075.1| Escherichia coli CFT073, complete genome Length = 5231428 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 314 ccgcatccgctgctgcagcgtcag 337 |||||||||||| ||||||||||| Sbjct: 2831690 ccgcatccgctgatgcagcgtcag 2831713
>emb|AL590111.14| Human DNA sequence from clone RP11-570F3 on chromosome 10 Contains part of a novel gene (FLJ30499) and the 3' end of a novel gene (FLJ30450), complete sequence Length = 41069 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 98 ctcactggtccttatttatc 117 |||||||||||||||||||| Sbjct: 3262 ctcactggtccttatttatc 3243
>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome Length = 4406967 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 365 ggccgcgccggaagcgcccg 384 |||||||||||||||||||| Sbjct: 70418 ggccgcgccggaagcgcccg 70437
>gb|U00096.2| Escherichia coli K-12 MG1655, complete genome Length = 4639675 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 314 ccgcatccgctgctgcagcgtcag 337 |||||||||||| ||||||||||| Sbjct: 2552164 ccgcatccgctgatgcagcgtcag 2552187
>emb|BX640451.1| Bordetella bronchiseptica strain RB50, complete genome; segment 15/16 Length = 343473 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 365 ggccgcgccggaagcgcccg 384 |||||||||||||||||||| Sbjct: 306799 ggccgcgccggaagcgcccg 306780
>emb|BX640436.1| Bordetella parapertussis strain 12822, complete genome; segment 14/14 Length = 255260 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 365 ggccgcgccggaagcgcccg 384 |||||||||||||||||||| Sbjct: 99170 ggccgcgccggaagcgcccg 99151
>emb|BX640411.1| Bordetella pertussis strain Tohama I, complete genome; segment 1/12 Length = 346359 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 365 ggccgcgccggaagcgcccg 384 |||||||||||||||||||| Sbjct: 284054 ggccgcgccggaagcgcccg 284073
>emb|BX571768.19| Zebrafish DNA sequence from clone DKEYP-2C4 in linkage group 11, complete sequence Length = 111222 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 110 tatttatcatacagtacaat 129 |||||||||||||||||||| Sbjct: 36635 tatttatcatacagtacaat 36616
>dbj|AP009048.1| Escherichia coli W3110 DNA, complete genome Length = 4646332 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 314 ccgcatccgctgctgcagcgtcag 337 |||||||||||| ||||||||||| Sbjct: 2559588 ccgcatccgctgatgcagcgtcag 2559611
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 356 ccactcgccggccgcgccgg 375 |||||||||||||||||||| Sbjct: 3755216 ccactcgccggccgcgccgg 3755235
>gb|CP000232.1| Moorella thermoacetica ATCC 39073, complete genome Length = 2628784 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 154 cccggccgtcttcctccggc 173 |||||||||||||||||||| Sbjct: 951280 cccggccgtcttcctccggc 951261
>gb|AC148685.1| Macaca mulatta Major Histocompatibility Complex BAC MMU188J04, complete sequence Length = 166821 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 223 gggactacatggagcactcg 242 |||||||||||||||||||| Sbjct: 22059 gggactacatggagcactcg 22040
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 300 ttgctctgcacccaccgcat 319 |||||||||||||||||||| Sbjct: 4951256 ttgctctgcacccaccgcat 4951237
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 361 cgccggccgcgccggaagcgcccg 384 |||||||||||||||| ||||||| Sbjct: 1467780 cgccggccgcgccggaggcgcccg 1467757
>dbj|AP005903.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:B1012G11 Length = 167168 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 300 ttgctctgcacccaccgcat 319 |||||||||||||||||||| Sbjct: 133788 ttgctctgcacccaccgcat 133769
>dbj|AB046702.2| Aspergillus awamori AwabfA gene for alpha-L-arabinofuranosidase A, complete cds Length = 3291 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 310 cccaccgcatccgctgctgc 329 |||||||||||||||||||| Sbjct: 771 cccaccgcatccgctgctgc 790
>dbj|AB085903.1| Aspergillus kawachii AkabfA gene for alpha-L-arabinofuranosidase A, complete cds Length = 3420 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 310 cccaccgcatccgctgctgc 329 |||||||||||||||||||| Sbjct: 603 cccaccgcatccgctgctgc 622
>emb|X75413.1|ECHEMF E.coli orf1, orf3 and hemF gene for coproporphyrinogen III oxidase Length = 3382 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 314 ccgcatccgctgctgcagcgtcag 337 |||||||||||| ||||||||||| Sbjct: 2229 ccgcatccgctgatgcagcgtcag 2252
>dbj|AB086395.1| Vigna angularis VaXTH1 gene for xyloglucan endotransglucosylase/hydrolase, complete cds Length = 1913 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 273 tcagtgcagtagttgtagat 292 |||||||||||||||||||| Sbjct: 1610 tcagtgcagtagttgtagat 1591
>gb|L46792.1|ACTXET Actinidia deliciosa clone AdXET-5 xyloglucan endotransglycosylase precursor (XET) mRNA, complete cds Length = 1178 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 273 tcagtgcagtagttgtagat 292 |||||||||||||||||||| Sbjct: 858 tcagtgcagtagttgtagat 839
>dbj|D16458.1|VIREXT5 V.angularis mRNA for endo-xyloglucan transferase, complete cds Length = 1319 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 273 tcagtgcagtagttgtagat 292 |||||||||||||||||||| Sbjct: 999 tcagtgcagtagttgtagat 980 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,048,399 Number of Sequences: 3902068 Number of extensions: 3048399 Number of successful extensions: 57740 Number of sequences better than 10.0: 65 Number of HSP's better than 10.0 without gapping: 64 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 57150 Number of HSP's gapped (non-prelim): 591 length of query: 423 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 401 effective length of database: 17,147,199,772 effective search space: 6876027108572 effective search space used: 6876027108572 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)