>DNBI_EBV (P03227) Major DNA-binding protein|
          Length = 1128

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +2

Query: 191 SFTNAVTPNPNICVNGPYLMYRHSGHKIMQKRRLLEALSLIHLVQR 328
           SF  + T   N  +NGPY+ + ++ HK +     L +L L H   R
Sbjct: 738 SFIKSTTRRENYIINGPYMKFLNTYHKTLFPDTKLSSLYLWHNFSR 783

>RECO_CHLPN (Q9Z7W5) DNA repair protein recO (Recombination protein O)|
          Length = 252

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 13/36 (36%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
 Frame = +2

Query: 206 VTPNPNIC-VNGPYLMYRHSGHKIMQKRRLLEALSL 310
           +TP  ++C  + PY  YR+ GHK+ +K +  +A+S+
Sbjct: 148 LTPACSLCKASLPYACYRYQGHKLCKKHQHKQAISI 183

>DNBI_SHV21 (P24910) Major DNA-binding protein|
          Length = 1128

 Score = 30.0 bits (66), Expect = 2.4
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +2

Query: 194 FTNAVTPNPNICVNGPYLMYRHSGHKIMQKRRLLEALSLIH 316
           F  + T   +  V GPY+ + +S HK+M     + AL L H
Sbjct: 741 FIKSATKKDSYIVTGPYMKFLNSLHKVMFPNAKISALYLWH 781

>SEC16_SCHPO (O14029) Multidomain vesicle coat protein|
          Length = 1995

 Score = 28.9 bits (63), Expect = 5.4
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 176 YSATRSFTNAVTPNPNICVNGPY 244
           Y  T+S  N ++P P++ VN PY
Sbjct: 723 YEMTKSHINVISPGPSLQVNAPY 745

>Y527_MYCPN (P75251) Hypothetical protein MG350.1 homolog (G12_orf225)|
          Length = 225

 Score = 28.5 bits (62), Expect = 7.1
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = +1

Query: 1   SFYTYSKLHFIFTKDFXXXXXXXXXXXSFILHFLLYPMLSCIK 129
           +F+   + H +F   F           SF+ HF+  P LS +K
Sbjct: 7   AFWPKKEQHQLFNLSFSAMMLALALIASFVSHFISIPFLSALK 49

>ATM_PIG (Q6PQD5) Serine-protein kinase ATM (EC 2.7.11.1) (Ataxia|
            telangiectasia mutated homolog) (A-T, mutated homolog)
          Length = 3056

 Score = 28.5 bits (62), Expect = 7.1
 Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 10/72 (13%)
 Frame = +2

Query: 104  YTPCSPVSNGNYKATPPMLLQACYYSATRSFTNAVTPN---------PNICVN-GPYLMY 253
            YT         YK   P L+  C++   +S  N +  +         P I VN  PY  Y
Sbjct: 1241 YTNIEDFYRSCYKVLIPHLVMRCHFDEVKSIANQIQGDWKSLLTDCFPKILVNILPYFAY 1300

Query: 254  RHSGHKIMQKRR 289
              +G + M ++R
Sbjct: 1301 EDTGDRGMAQQR 1312

>SKI_AVIES (P17863) Transforming protein Ski|
          Length = 437

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
 Frame = +2

Query: 95  ISCYTPCSPVSNGNYKATP---PMLLQACYYSATRSFTNAVTPN 217
           +S + P SP  + N K      P L++   + + +SF NAV PN
Sbjct: 373 LSAFRPWSPAVSANEKELSTHLPALIRDSSFYSYKSFENAVAPN 416

>SKI_CHICK (P49140) Ski oncogene (C-ski)|
          Length = 750

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
 Frame = +2

Query: 95  ISCYTPCSPVSNGNYKATP---PMLLQACYYSATRSFTNAVTPN 217
           +S + P SP  + N K      P L++   + + +SF NAV PN
Sbjct: 394 LSAFRPWSPAVSANEKELSTHLPALIRDSSFYSYKSFENAVAPN 437


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,255,638
Number of Sequences: 219361
Number of extensions: 1271052
Number of successful extensions: 3025
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2976
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3025
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2395157885
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)