ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet119c08 |
|---|---|
| Clone Library Name | barley_pub |
>THNX_HORVU (Q8H0Q5) Probable leaf thionin precursor [Contains: Probable leaf| thionin; Acidic protein] Length = 137 Score = 74.7 bits (182), Expect = 1e-13 Identities = 34/34 (100%), Positives = 34/34 (100%) Frame = -3 Query: 310 NVSRGQEMKFDMGLCSNACARFCNDGDVIQSVEA 209 NVSRGQEMKFDMGLCSNACARFCNDGDVIQSVEA Sbjct: 104 NVSRGQEMKFDMGLCSNACARFCNDGDVIQSVEA 137
>THN7_HORVU (Q42838) Thionin BTH7 precursor [Contains: Thionin BTH7; Acidic| protein] Length = 137 Score = 73.2 bits (178), Expect = 3e-13 Identities = 33/34 (97%), Positives = 34/34 (100%) Frame = -3 Query: 310 NVSRGQEMKFDMGLCSNACARFCNDGDVIQSVEA 209 NVSRGQEMKFDMGLCSNACARFCNDG+VIQSVEA Sbjct: 104 NVSRGQEMKFDMGLCSNACARFCNDGEVIQSVEA 137
>THN5_HORVU (P09617) Leaf-specific thionin precursor [Contains: Leaf-specific| thionin; Acidic protein] Length = 137 Score = 73.2 bits (178), Expect = 3e-13 Identities = 33/34 (97%), Positives = 34/34 (100%) Frame = -3 Query: 310 NVSRGQEMKFDMGLCSNACARFCNDGDVIQSVEA 209 NVSRGQEMKFDMGLCSNACARFCNDG+VIQSVEA Sbjct: 104 NVSRGQEMKFDMGLCSNACARFCNDGEVIQSVEA 137
>THN6_HORVU (P09618) Leaf-specific thionin BTH6 precursor [Contains:| Leaf-specific thionin BTH6; Acidic protein] Length = 137 Score = 69.3 bits (168), Expect = 5e-12 Identities = 32/34 (94%), Positives = 32/34 (94%) Frame = -3 Query: 310 NVSRGQEMKFDMGLCSNACARFCNDGDVIQSVEA 209 NV RGQEMKFDMGLCSNACARFCNDG VIQSVEA Sbjct: 104 NVFRGQEMKFDMGLCSNACARFCNDGAVIQSVEA 137
>THN3_HORVU (P08772) Leaf-specific thionin DB4 precursor [Contains:| Leaf-specific thionin DB4; Acidic protein] Length = 137 Score = 69.3 bits (168), Expect = 5e-12 Identities = 32/34 (94%), Positives = 32/34 (94%) Frame = -3 Query: 310 NVSRGQEMKFDMGLCSNACARFCNDGDVIQSVEA 209 NV RGQEMKFDMGLCSNACARFCNDG VIQSVEA Sbjct: 104 NVFRGQEMKFDMGLCSNACARFCNDGAVIQSVEA 137
>LTBP2_RAT (O35806) Latent transforming growth factor beta-binding protein 2| precursor (LTBP-2) Length = 1764 Score = 31.6 bits (70), Expect = 1.1 Identities = 16/45 (35%), Positives = 21/45 (46%) Frame = -3 Query: 244 CNDGDVIQSVEA*SCLLGHDFYGQGRFVIFCSTILIPSPDRSKCI 110 C D D + E CL GH +G F C T P+PD +C+ Sbjct: 1206 CQDVDECATTEP--CLGGHCVNTEGSFNCLCETGFQPAPDSGECV 1248
>DGTL1_BIFLO (Q8G572) Deoxyguanosinetriphosphate triphosphohydrolase-like| protein Length = 475 Score = 30.8 bits (68), Expect = 1.9 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 3/50 (6%) Frame = -3 Query: 187 DFYGQGRFVIFCSTILIPSPDRSKCIIL---VMYFCFFPRSNKSYHDESI 47 D YG G + S I+IP + + L +YF PR + +H E + Sbjct: 364 DTYGPGPLTRYSSNIVIPEDTNYEIVALKGIAVYFVMAPREREPFHQEEL 413
>DLGP3_RAT (P97838) Disks large-associated protein 3 (DAP-3)| (SAP90/PSD-95-associated protein 3) (SAPAP3) (PSD-95/SAP90-binding protein 3) Length = 977 Score = 30.4 bits (67), Expect = 2.5 Identities = 27/88 (30%), Positives = 36/88 (40%), Gaps = 8/88 (9%) Frame = +1 Query: 220 TE*HHHHYRNGHMRCCRVPCRISS---LGHGKH*RIRATWGW-----ISVDRGSKATLPL 375 T HHHH+ + H R R S G G+H + +AT W + D G P Sbjct: 220 TSHHHHHHHHHHHHQSRHGKRSKSKDRKGDGRH-QTKATGWWSSDDNLDSDSGFLGGRPP 278 Query: 376 TMPRRVFKSSAKDSAHRPLGRELRGGQS 459 P F A D ++R L + R G S Sbjct: 279 GEPGGPFCLDAPDGSYRDLSFKGRSGGS 306
>DLGP3_MOUSE (Q6PFD5) Disks large-associated protein 3 (DAP-3)| (SAP90/PSD-95-associated protein 3) (SAPAP3) (PSD-95/SAP90-binding protein 3) Length = 977 Score = 30.4 bits (67), Expect = 2.5 Identities = 27/88 (30%), Positives = 36/88 (40%), Gaps = 8/88 (9%) Frame = +1 Query: 220 TE*HHHHYRNGHMRCCRVPCRISS---LGHGKH*RIRATWGW-----ISVDRGSKATLPL 375 T HHHH+ + H R R S G G+H + +AT W + D G P Sbjct: 220 TSHHHHHHHHHHHHQSRHGKRSKSKDRKGDGRH-QTKATGWWSSDDNLDSDSGFLGGRPP 278 Query: 376 TMPRRVFKSSAKDSAHRPLGRELRGGQS 459 P F A D ++R L + R G S Sbjct: 279 GEPGGPFCLDAPDGSYRDLSFKGRSGGS 306
>LTBP2_HUMAN (Q14767) Latent transforming growth factor beta-binding protein 2| precursor (LTBP-2) Length = 1821 Score = 30.0 bits (66), Expect = 3.3 Identities = 23/82 (28%), Positives = 31/82 (37%), Gaps = 14/82 (17%) Frame = -3 Query: 313 VNVSRGQEMKFDMGLCSNACARF---CNDG-----------DVIQSVEA*SCLLGHDFYG 176 VN G+E G C N+ F C G DV + C+ GH Sbjct: 1177 VNECMGEEHCAPHGECLNSHGSFFCLCAPGFVSAEGGTSCQDVDECATTDPCVGGHCVNT 1236 Query: 175 QGRFVIFCSTILIPSPDRSKCI 110 +G F C T PSP+ +C+ Sbjct: 1237 EGSFNCLCETGFQPSPESGECV 1258
>RTN4R_MACFA (Q9N0E3) Reticulon-4 receptor precursor (Nogo receptor) (NgR)| (Nogo-66 receptor) Length = 473 Score = 29.6 bits (65), Expect = 4.3 Identities = 10/27 (37%), Positives = 17/27 (62%) Frame = +1 Query: 313 RIRATWGWISVDRGSKATLPLTMPRRV 393 R R W W+ RGS + +P ++P+R+ Sbjct: 267 RARPLWAWLQKFRGSSSEVPCSLPQRL 293
>RTN4R_HUMAN (Q9BZR6) Reticulon-4 receptor precursor (Nogo receptor) (NgR)| (Nogo-66 receptor) Length = 473 Score = 29.6 bits (65), Expect = 4.3 Identities = 10/27 (37%), Positives = 17/27 (62%) Frame = +1 Query: 313 RIRATWGWISVDRGSKATLPLTMPRRV 393 R R W W+ RGS + +P ++P+R+ Sbjct: 267 RARPLWAWLQKFRGSSSEVPCSLPQRL 293
>SC11A_HUMAN (Q9UI33) Sodium channel protein type 11 alpha subunit (Sodium| channel protein type XI alpha subunit) (Voltage-gated sodium channel alpha subunit Nav1.9) (Sensory neuron sodium channel 2) (Peripheral nerve sodium channel 5) (hNaN) Length = 1791 Score = 29.6 bits (65), Expect = 4.3 Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 2/31 (6%) Frame = -1 Query: 123 EANVSS*LCISVFSLVPI--RVTTMNLFIPL 37 EAN SS LC+ VF L+ + ++ +NLFI L Sbjct: 779 EANASSSLCVIVFILITVIGKLVVLNLFIAL 809
>RTN4R_RAT (Q99M75) Reticulon-4 receptor precursor (Nogo receptor) (NgR)| (Nogo-66 receptor) Length = 473 Score = 29.3 bits (64), Expect = 5.6 Identities = 10/27 (37%), Positives = 16/27 (59%) Frame = +1 Query: 313 RIRATWGWISVDRGSKATLPLTMPRRV 393 R R W W+ RGS + +P +P+R+ Sbjct: 267 RARPLWAWLQKFRGSSSEVPCNLPQRL 293
>RTN4R_MOUSE (Q99PI8) Reticulon-4 receptor precursor (Nogo receptor) (NgR)| (Nogo-66 receptor) Length = 473 Score = 29.3 bits (64), Expect = 5.6 Identities = 10/27 (37%), Positives = 16/27 (59%) Frame = +1 Query: 313 RIRATWGWISVDRGSKATLPLTMPRRV 393 R R W W+ RGS + +P +P+R+ Sbjct: 267 RARPLWAWLQKFRGSSSEVPCNLPQRL 293
>THNB_HORVU (P21742) Beta-hordothionin precursor [Contains: Beta-hordothionin;| Acidic protein] Length = 136 Score = 28.9 bits (63), Expect = 7.3 Identities = 16/43 (37%), Positives = 23/43 (53%) Frame = -3 Query: 355 CHDPLRSSPMSHGFVNVSRGQEMKFDMGLCSNACARFCNDGDV 227 C+ R+S + + +EMK + CS+AC FCN GDV Sbjct: 88 CNLGCRASMCDYMVNAAADDEEMKLYVEHCSDACVNFCN-GDV 129
>THN2_WHEAT (P32032) Alpha-2-purothionin precursor [Contains:| Alpha-2-purothionin; Acidic protein] Length = 136 Score = 28.9 bits (63), Expect = 7.3 Identities = 15/49 (30%), Positives = 24/49 (48%) Frame = -3 Query: 355 CHDPLRSSPMSHGFVNVSRGQEMKFDMGLCSNACARFCNDGDVIQSVEA 209 C+ RSS + + +EMK + C +AC FCN + S++A Sbjct: 88 CNLGCRSSVCDYMVNAAADDEEMKLYVENCGDACVNFCNGDAGLTSLDA 136
>THN1_WHEAT (P01544) Alpha-1-purothionin precursor (Purothionin A-II)| [Contains: Alpha-1-purothionin; Acidic protein] (Fragment) Length = 126 Score = 28.9 bits (63), Expect = 7.3 Identities = 15/49 (30%), Positives = 25/49 (51%) Frame = -3 Query: 355 CHDPLRSSPMSHGFVNVSRGQEMKFDMGLCSNACARFCNDGDVIQSVEA 209 C+ RSS + + +EMK + C++AC FCN + S++A Sbjct: 77 CNLGCRSSVCDYMVNAAADDEEMKLYVENCADACVSFCNGDAGLPSLDA 125
>PLCG2_HUMAN (P16885) 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase| gamma 2 (EC 3.1.4.11) (Phosphoinositide phospholipase C) (PLC-gamma-2) (Phospholipase C-gamma-2) (PLC-IV) Length = 1265 Score = 28.5 bits (62), Expect = 9.6 Identities = 13/50 (26%), Positives = 22/50 (44%) Frame = +1 Query: 238 HYRNGHMRCCRVPCRISSLGHGKH*RIRATWGWISVDRGSKATLPLTMPR 387 HYR H+RC R++ + W + S+ RG + + +PR Sbjct: 616 HYRETHLRCAEFELRLTDPVPNPNPHESKPWYYDSLSRGEAEDMLMRIPR 665
>GUN4_THEFU (P26221) Endoglucanase E-4 precursor (EC 3.2.1.4)| (Endo-1,4-beta-glucanase E-4) (Cellulase E-4) (Cellulase E4) Length = 880 Score = 28.5 bits (62), Expect = 9.6 Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%) Frame = +3 Query: 273 PMSNFISWPRET-LTNPCDMGLDLSGSW 353 P +N +SW ++ L + D+GLDL+G W Sbjct: 72 PENNRVSWRGDSGLNDGADVGLDLTGGW 99
>PANB_WIGBR (Q8D2A5) 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC| 2.1.2.11) (Ketopantoate hydroxymethyltransferase) Length = 265 Score = 28.5 bits (62), Expect = 9.6 Identities = 13/35 (37%), Positives = 17/35 (48%) Frame = -2 Query: 437 LPNGRWAESFADDLNTRRGIVSGRVALLPRSTEIQ 333 L G W +LNTR V G + L P+S +Q Sbjct: 113 LEGGLWVSDIIHELNTRSIPVCGHIGLTPQSINMQ 147 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 77,078,559 Number of Sequences: 219361 Number of extensions: 1657470 Number of successful extensions: 4346 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 3946 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4257 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3246866728 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
