ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet119c07 |
|---|---|
| Clone Library Name | barley_pub |
>PAR1_XENLA (P47749) Proteinase-activated receptor 1 precursor (PAR-1)| (Thrombin receptor) Length = 420 Score = 34.7 bits (78), Expect = 0.059 Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 4/75 (5%) Frame = -1 Query: 240 HACMRTRAFAMAVRPLFLRIRCFDSLI*NCQNIL----YIQKQRQY*IISVLFSRYYFVR 73 ++C +TRA +AV L + I CF N+L Y+Q+ ++ L+ Y Sbjct: 303 NSCKKTRALFLAVVVLCVFIICFGPT-----NVLFLTHYLQEANEF-----LYFAYILSA 352 Query: 72 ATSSISCCVLPFDYY 28 S+SCC+ P YY Sbjct: 353 CVGSVSCCLDPLIYY 367
>ECM2_HUMAN (O94769) Extracellular matrix protein 2 precursor (Matrix| glycoprotein SC1/ECM2) Length = 699 Score = 29.6 bits (65), Expect = 1.9 Identities = 16/37 (43%), Positives = 20/37 (54%) Frame = +3 Query: 69 LHVRNNNVKITHLLSSTASVFECTRCFGSFKLNCQNI 179 LH+ NN +KI + S T F C R + S L QNI Sbjct: 665 LHLENNYIKIREIPSYT---FSCIRSYSSIVLKPQNI 698
>RFBE_SHIFL (P37781) Putative O-antigen transporter| Length = 418 Score = 29.3 bits (64), Expect = 2.5 Identities = 21/98 (21%), Positives = 45/98 (45%), Gaps = 4/98 (4%) Frame = +3 Query: 78 RNNNVKITHLLSSTASVFECTRCFGSFKLNCQN---ILYVGREGVRPLQMHVCACMHA-C 245 R+N+ + T ++S++ S CFG+F L + + Y+ GV + + + A C Sbjct: 69 RDNHHERTKVISTSTSFLVLFSCFGAFLLLIFSDGIVNYLKISGVEHSDIQLAFKLLAIC 128 Query: 246 MPSMVYSSATTILIAGDSFLPVTSVAKLTGSPYSGPLP 359 +P + + + ++ GD + ++ K S +P Sbjct: 129 IPLFILNQLWSAILEGDEKFGIVNIQKSISSSCIAGIP 166
>MMRN1_HUMAN (Q13201) Multimerin-1 precursor (Endothelial cell multimerin 1)| (EMILIN-4) (Elastin microfibril interface located protein 4) (Elastin microfibril interfacer 4) Length = 1228 Score = 29.3 bits (64), Expect = 2.5 Identities = 14/44 (31%), Positives = 23/44 (52%) Frame = -3 Query: 331 VNFATLVTGKNESPAIKMVVADE*TMDGMHACMHAHTCICNGRT 200 VN T++ G+ + ++ +E + H C + TCI NGRT Sbjct: 1019 VNLTTVLIGRTQRNTDNIIYPEEYSSCSRHPCQNGGTCI-NGRT 1061
>HBB_LEPPA (P02138) Hemoglobin beta subunit (Hemoglobin beta chain)| (Beta-globin) Length = 147 Score = 29.3 bits (64), Expect = 2.5 Identities = 13/41 (31%), Positives = 23/41 (56%) Frame = +3 Query: 75 VRNNNVKITHLLSSTASVFECTRCFGSFKLNCQNILYVGRE 197 +++NN H A++ ECTR FG+ K + N+ ++ E Sbjct: 54 IKHNNKVSAHGRKVLAAIIECTRHFGNIKGHLANLSHLHSE 94
>THIX_YEAST (Q08485) Putative thiamine transporter YOR071C| Length = 598 Score = 28.5 bits (62), Expect = 4.2 Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 12/73 (16%) Frame = +3 Query: 120 ASVFECTRCFGSFKL-----NCQNILYVGREGVRPLQMHV------CACMH-ACMPSMVY 263 A F C CF ++ NC + G+ P + + CAC+ AC+P Y Sbjct: 330 AGAFFCGLCFTMSQMSSTISNCGFATGMDMAGLLPKYVDIKRGALFCACISWACLPWNFY 389 Query: 264 SSATTILIAGDSF 302 +S++T L SF Sbjct: 390 NSSSTFLTVMSSF 402
>HRCA_SYNEL (Q8DKU4) Heat-inducible transcription repressor hrcA| Length = 352 Score = 28.1 bits (61), Expect = 5.5 Identities = 12/43 (27%), Positives = 25/43 (58%), Gaps = 1/43 (2%) Frame = -3 Query: 322 ATLVTGKNESPA-IKMVVADE*TMDGMHACMHAHTCICNGRTP 197 A L+T +++P+ +++ + E T+ M C ++C C G +P Sbjct: 274 APLITTDSQAPSQVQIRIGSENTLAPMQCCTLVYSCYCYGDSP 316
>BGAL_ASPNG (P29853) Beta-galactosidase precursor (EC 3.2.1.23) (Lactase)| (Tilactase) (Lactase-N) Length = 1006 Score = 28.1 bits (61), Expect = 5.5 Identities = 13/27 (48%), Positives = 19/27 (70%) Frame = +3 Query: 51 NKRSS*LHVRNNNVKITHLLSSTASVF 131 N R S +HV ++NV T+++ STA VF Sbjct: 466 NGRDSKIHVTDHNVSGTNIIYSTAEVF 492
>ZN416_HUMAN (Q9BWM5) Zinc finger protein 416| Length = 594 Score = 27.7 bits (60), Expect = 7.2 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%) Frame = +3 Query: 108 LSSTASVFECTRCFGSFKLNCQNILY-VGREGVRPLQMHVC 227 + +TA +EC +C SF L C I + + G RP + C Sbjct: 403 IHTTARPYECGQCGKSFSLKCGLIQHQLIHSGARPFECDEC 443
>UL49_HHV6U (P52441) Protein U33| Length = 470 Score = 27.7 bits (60), Expect = 7.2 Identities = 14/37 (37%), Positives = 20/37 (54%) Frame = +3 Query: 69 LHVRNNNVKITHLLSSTASVFECTRCFGSFKLNCQNI 179 +H+ N VK L S S F+C RC SF+ C ++ Sbjct: 415 VHLYNVTVKKLLRLVSHGSDFQCQRCQHSFRETCLDL 451
>US02_BHV1S (Q08099) Protein US2 homolog| Length = 220 Score = 27.3 bits (59), Expect = 9.4 Identities = 14/38 (36%), Positives = 18/38 (47%) Frame = +3 Query: 174 NILYVGREGVRPLQMHVCACMHACMPSMVYSSATTILI 287 N+L GR G RP M V P + +ATT L+ Sbjct: 104 NLLNSGRAGARPFHMWVFGAADLYAPIFAHIAATTRLV 141
>3BHS5_MOUSE (Q61694) 3 beta-hydroxysteroid dehydrogenase type 5 (3| beta-hydroxysteroid dehydrogenase type V) (3Beta-HSD V) (NADPH-dependent 3-beta-hydroxy-delta(5)-steroid dehydrogenase) (EC 1.1.1.-) (3-beta-hydroxy-5-ene steroid dehydrogenase) (Progeste Length = 372 Score = 27.3 bits (59), Expect = 9.4 Identities = 16/41 (39%), Positives = 26/41 (63%) Frame = +3 Query: 171 QNILYVGREGVRPLQMHVCACMHACMPSMVYSSATTILIAG 293 Q IL V +G Q+ + AC+ A +P+ +YSS ++L+AG Sbjct: 94 QTILDVNLKGT---QLLLDACVEASVPTFIYSS--SVLVAG 129
>MSH6_ARATH (O04716) DNA mismatch repair protein MSH6-1 (AtMsh6-1)| Length = 1324 Score = 27.3 bits (59), Expect = 9.4 Identities = 13/22 (59%), Positives = 13/22 (59%) Frame = +3 Query: 243 CMPSMVYSSATTILIAGDSFLP 308 C PS YSS IL G SFLP Sbjct: 616 CQPSSAYSSEGKILGDGSSFLP 637 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 44,618,359 Number of Sequences: 219361 Number of extensions: 812489 Number of successful extensions: 2239 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 2167 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2236 length of database: 80,573,946 effective HSP length: 96 effective length of database: 59,515,290 effective search space used: 1428366960 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
