ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet119c06 |
|---|---|
| Clone Library Name | barley_pub |
>emb|X52472.1|TAPRP T.aestivum mRNA for a proline-rich protein Length = 1487 Score = 490 bits (247), Expect = e-135 Identities = 344/373 (92%), Gaps = 5/373 (1%) Strand = Plus / Minus Query: 56 acacgaaagaacaaccgagtcatgtgcacagatgaacgcataccagcacgcaaatgataa 115 ||||||||||||||| ||||||||||||||||||||| |||||| |||||||||||||| Sbjct: 1487 acacgaaagaacaactgagtcatgtgcacagatgaacatataccaacacgcaaatgataa 1428 Query: 116 ttacaaagtagtaataatcatcatgggtgcatggaacaagagaaactaaaaagggatgat 175 ||||| | ||||| || |||||||||||||||||||||| ||||||||||| || ||| | Sbjct: 1427 ttacagaatagtagtactcatcatgggtgcatggaacaacagaaactaaaa-ggaatggt 1369 Query: 176 ggaatacaaggaatgcaaaaaagatgcatcatcactatctcgctagccggatactatgcc 235 |||||||||||||| |||||| ||||||||||||||||||||||| |||||||||||||| Sbjct: 1368 ggaatacaaggaatacaaaaa-gatgcatcatcactatctcgctaaccggatactatgcc 1310 Query: 236 acttattctggaaatagcacatcgtggctccggacggggtcgatctcctcctccttcggc 295 ||||||||| |||||||||||||||||||||||||||||||||||||||||| || || Sbjct: 1309 acttattctagaaatagcacatcgtggctccggacggggtcgatctcctcct---tcagc 1253 Query: 296 tgtcatatgtgagcatcacatcaattgtccgtcatcggcggcttgcccttcggaggcggc 355 ||||||||||||| ||||||||||||||| |||||||| ||||||||||||||||||||| Sbjct: 1252 tgtcatatgtgagtatcacatcaattgtcagtcatcggtggcttgcccttcggaggcggc 1193 Query: 356 tccggcttgggttcgggttcaggcttgggctctggcttaggcatgggttgaggcttgggc 415 |||||||| |||||||| |||||||||||||||||||||||||| |||| |||||| ||| Sbjct: 1192 tccggcttcggttcgggctcaggcttgggctctggcttaggcataggttcaggcttaggc 1133 Query: 416 tctggttttggca 428 |||||||| |||| Sbjct: 1132 tctggtttaggca 1120 Score = 54.0 bits (27), Expect = 4e-04 Identities = 51/59 (86%) Strand = Plus / Minus Query: 371 ggttcaggcttgggctctggcttaggcatgggttgaggcttgggctctggttttggcat 429 ||||||||||| |||||||| ||||||| |||| ||||| |||||||| |||||||| Sbjct: 1147 ggttcaggcttaggctctggtttaggcaatggtttgggcttaggctctggctttggcat 1089 Score = 48.1 bits (24), Expect = 0.024 Identities = 39/44 (88%) Strand = Plus / Minus Query: 377 ggcttgggctctggcttaggcatgggttgaggcttgggctctgg 420 ||||| ||||||||||| ||||| || | ||||||||||||||| Sbjct: 1111 ggcttaggctctggctttggcatcggctcaggcttgggctctgg 1068 Score = 48.1 bits (24), Expect = 0.024 Identities = 33/36 (91%) Strand = Plus / Minus Query: 380 ttgggctctggcttaggcatgggttgaggcttgggc 415 |||||||||||||| |||||||||| ||| |||||| Sbjct: 382 ttgggctctggctttggcatgggttcaggtttgggc 347 Score = 48.1 bits (24), Expect = 0.024 Identities = 33/36 (91%) Strand = Plus / Minus Query: 376 aggcttgggctctggcttaggcatgggttgaggctt 411 |||||| ||||||||||| |||||||||| |||||| Sbjct: 302 aggcttaggctctggctttggcatgggttcaggctt 267 Score = 46.1 bits (23), Expect = 0.096 Identities = 32/35 (91%) Strand = Plus / Minus Query: 406 aggcttgggctctggttttggcattgggtaaggct 440 |||||| ||||| ||||| |||||||||||||||| Sbjct: 890 aggcttaggctcaggtttgggcattgggtaaggct 856 Score = 46.1 bits (23), Expect = 0.096 Identities = 23/23 (100%) Strand = Plus / Minus Query: 374 tcaggcttgggctctggcttagg 396 ||||||||||||||||||||||| Sbjct: 736 tcaggcttgggctctggcttagg 714 Score = 46.1 bits (23), Expect = 0.096 Identities = 44/51 (86%) Strand = Plus / Minus Query: 370 gggttcaggcttgggctctggcttaggcatgggttgaggcttgggctctgg 420 |||||||||||| ||| ||||| ||| ||||||| |||||||||||||| Sbjct: 278 gggttcaggcttaggcattggctctggcttgggttgcggcttgggctctgg 228 Score = 42.1 bits (21), Expect = 1.5 Identities = 57/69 (82%) Strand = Plus / Minus Query: 358 cggcttgggttcgggttcaggcttgggctctggcttaggcatgggttgaggcttgggctc 417 ||||| ||||| ||| |||||||| ||||| || || ||||| || | |||||||||||| Sbjct: 908 cggctcgggtttgggctcaggcttaggctcaggtttgggcattgggtaaggcttgggctc 849 Query: 418 tggttttgg 426 || ||||| Sbjct: 848 aggctttgg 840 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 405 gaggcttgggctctggttttggcat 429 ||||||| ||||||||||||||||| Sbjct: 345 gaggcttaggctctggttttggcat 321 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 374 tcaggcttgggctctggctt 393 |||||||||||||||||||| Sbjct: 1084 tcaggcttgggctctggctt 1065
>gb|AF331853.1| Saccharum hybrid cultivar CP72-2086 proline-rich protein mRNA, partial sequence Length = 1173 Score = 50.1 bits (25), Expect = 0.006 Identities = 37/41 (90%) Strand = Plus / Minus Query: 353 ggctccggcttgggttcgggttcaggcttgggctctggctt 393 ||||| || ||||||| ||||||||||||||||| |||||| Sbjct: 732 ggctctggtttgggtttgggttcaggcttgggctttggctt 692 Score = 44.1 bits (22), Expect = 0.38 Identities = 40/46 (86%) Strand = Plus / Minus Query: 371 ggttcaggcttgggctctggcttaggcatgggttgaggcttgggct 416 ||||||||||| |||||||| || || |||||| ||||||||||| Sbjct: 744 ggttcaggctttggctctggtttgggtttgggttcaggcttgggct 699 Score = 42.1 bits (21), Expect = 1.5 Identities = 63/77 (81%) Strand = Plus / Minus Query: 350 ggcggctccggcttgggttcgggttcaggcttgggctctggcttaggcatgggttgaggc 409 ||||| || ||||| |||| ||| ||||||||||| || |||| ||| | ||||| ||| Sbjct: 963 ggcgggtcgggctttggtttgggctcaggcttgggttcgggctcaggttttggttggggc 904 Query: 410 ttgggctctggttttgg 426 || ||||| |||||||| Sbjct: 903 ttaggctccggttttgg 887 Score = 42.1 bits (21), Expect = 1.5 Identities = 33/37 (89%) Strand = Plus / Minus Query: 362 ttgggttcgggttcaggcttgggctctggcttaggca 398 ||||||| ||| ||||||||||||||||||| |||| Sbjct: 621 ttgggttttggtccaggcttgggctctggcttcggca 585
>ref|NM_128161.1| Arabidopsis thaliana PDF1.2b AT2G26020 (PDF1.2b) mRNA, complete cds Length = 274 Score = 48.1 bits (24), Expect = 0.024 Identities = 24/24 (100%) Strand = Plus / Plus Query: 118 acaaagtagtaataatcatcatgg 141 |||||||||||||||||||||||| Sbjct: 12 acaaagtagtaataatcatcatgg 35
>gb|AC004747.3| Arabidopsis thaliana chromosome 2 clone T19L18 map B68, complete sequence Length = 87080 Score = 48.1 bits (24), Expect = 0.024 Identities = 24/24 (100%) Strand = Plus / Minus Query: 118 acaaagtagtaataatcatcatgg 141 |||||||||||||||||||||||| Sbjct: 55234 acaaagtagtaataatcatcatgg 55211
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 46.1 bits (23), Expect = 0.096 Identities = 26/27 (96%) Strand = Plus / Plus Query: 346 cggaggcggctccggcttgggttcggg 372 ||||||||||||||||||||| ||||| Sbjct: 3480480 cggaggcggctccggcttgggctcggg 3480506
>gb|AC163706.2| Gallus gallus BAC clone CH261-71A16 from chromosome w, complete sequence Length = 206206 Score = 46.1 bits (23), Expect = 0.096 Identities = 29/31 (93%) Strand = Plus / Plus Query: 157 gaaactaaaaagggatgatggaatacaagga 187 ||||||||| |||||||||||||||||||| Sbjct: 113780 gaaactaaactgggatgatggaatacaagga 113810
>emb|AL391478.14| Human DNA sequence from clone RP11-552I13 on chromosome 10 Contains part of the NRG3 gene for neuregulin 3, complete sequence Length = 180625 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Minus Query: 23 cattcatgtaaatgaataagat 44 |||||||||||||||||||||| Sbjct: 22851 cattcatgtaaatgaataagat 22830
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 44.1 bits (22), Expect = 0.38 Identities = 28/30 (93%) Strand = Plus / Plus Query: 355 ctccggcttgggttcgggttcaggcttggg 384 |||||||||||||| ||| ||||||||||| Sbjct: 2710023 ctccggcttgggtttgggctcaggcttggg 2710052
>gb|AF377565.1| Tripsacum dactyloides clone T. anonymous genomic RFLP marker Csu1138 Length = 369 Score = 42.1 bits (21), Expect = 1.5 Identities = 36/41 (87%) Strand = Plus / Minus Query: 380 ttgggctctggcttaggcatgggttgaggcttgggctctgg 420 |||||||||||||| ||| |||| | |||||||||||||| Sbjct: 141 ttgggctctggcttgggcttgggctccggcttgggctctgg 101 Score = 42.1 bits (21), Expect = 1.5 Identities = 36/41 (87%) Strand = Plus / Minus Query: 353 ggctccggcttgggttcgggttcaggcttgggctctggctt 393 ||||| |||||||| | ||| || ||||||||||||||||| Sbjct: 138 ggctctggcttgggcttgggctccggcttgggctctggctt 98
>gb|AC140074.2| Mus musculus BAC clone RP23-141A5 from chromosome 8, complete sequence Length = 190381 Score = 42.1 bits (21), Expect = 1.5 Identities = 36/41 (87%) Strand = Plus / Plus Query: 352 cggctccggcttgggttcgggttcaggcttgggctctggct 392 |||||| |||| |||||||||||| |||| |||||| |||| Sbjct: 152163 cggctcgggctcgggttcgggttctggctcgggctccggct 152203
>gb|AY459322.1| Mus musculus apoptosis repressor interacting with CARD (Nol3) mRNA, complete cds Length = 983 Score = 42.1 bits (21), Expect = 1.5 Identities = 36/41 (87%) Strand = Plus / Minus Query: 352 cggctccggcttgggttcgggttcaggcttgggctctggct 392 |||||| |||| |||||||||||| |||| |||||| |||| Sbjct: 750 cggctcgggctcgggttcgggttctggctcgggctccggct 710
>gb|AC124584.5| Mus musculus BAC clone RP23-127B8 from chromosome 8, complete sequence Length = 193083 Score = 42.1 bits (21), Expect = 1.5 Identities = 36/41 (87%) Strand = Plus / Plus Query: 352 cggctccggcttgggttcgggttcaggcttgggctctggct 392 |||||| |||| |||||||||||| |||| |||||| |||| Sbjct: 113786 cggctcgggctcgggttcgggttctggctcgggctccggct 113826
>emb|AL121990.34|HSDJ613A2 Human DNA sequence from clone RP4-613A2 on chromosome 1q42.11-42.3 Contains the 5' end of the NUP133 gene, a novel gene, the ABCB10 gene for ATP-binding cassette, sub-family B (MDR/TAP), member 10, a high-mobility group nucleosomal binding domain 2 (HMGN2) pseudogene, the TAF5L gene for TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor, 65kDa, the 5' end of a novel gene (KIAA0133) and three CpG islands, complete sequence Length = 147913 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 406 aggcttgggctctggttttgg 426 ||||||||||||||||||||| Sbjct: 84668 aggcttgggctctggttttgg 84648
>emb|AL357515.26| Human DNA sequence from clone RP11-397G5 on chromosome 6 Contains the 3' end of the AMD1 gene for S-adenosylmethionine decarboxylase 1, two novel genes, a glutathione S-transferase M2 (muscle) (GSTM2) pseudogene and three CpG islands, complete sequence Length = 190440 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 76 catgtgcacagatgaacgcat 96 ||||||||||||||||||||| Sbjct: 121761 catgtgcacagatgaacgcat 121741
>ref|NM_030152.2| Mus musculus nucleolar protein 3 (apoptosis repressor with CARD domain) (Nol3), mRNA Length = 2870 Score = 42.1 bits (21), Expect = 1.5 Identities = 36/41 (87%) Strand = Plus / Minus Query: 352 cggctccggcttgggttcgggttcaggcttgggctctggct 392 |||||| |||| |||||||||||| |||| |||||| |||| Sbjct: 743 cggctcgggctcgggttcgggttctggctcgggctccggct 703
>emb|AL138776.10| Human DNA sequence from clone RP11-20H6 on chromosome 1q25.1-31.1 Contains the 3' end of the RGSL1 gene for regulator of G-protein signalling like 1, the RNASEL gene for ribonuclease L (2',5'-oligoisoadenylate synthetase-dependent) and a CpG island, complete sequence Length = 100549 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 176 ggaatacaaggaatgcaaaaa 196 ||||||||||||||||||||| Sbjct: 33257 ggaatacaaggaatgcaaaaa 33277
>gb|AC090480.11| Mus Musculus Strain C57BL6/J chromosome 8 BAC, RP23-248L18, Complete Sequence, complete sequence Length = 231039 Score = 42.1 bits (21), Expect = 1.5 Identities = 36/41 (87%) Strand = Plus / Plus Query: 352 cggctccggcttgggttcgggttcaggcttgggctctggct 392 |||||| |||| |||||||||||| |||| |||||| |||| Sbjct: 215031 cggctcgggctcgggttcgggttctggctcgggctccggct 215071
>gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome Length = 3046682 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 407 ggcttgggctctggttttggc 427 ||||||||||||||||||||| Sbjct: 2958492 ggcttgggctctggttttggc 2958512
>gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome Length = 2932766 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 407 ggcttgggctctggttttggc 427 ||||||||||||||||||||| Sbjct: 1056648 ggcttgggctctggttttggc 1056668
>gb|AY961377.1| Arabidopsis halleri putative plant defensin PDF1.2 mRNA, complete cds Length = 432 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 121 aagtagtaataatcatcatgg 141 ||||||||||||||||||||| Sbjct: 21 aagtagtaataatcatcatgg 41
>gb|AY961376.1| Arabidopsis halleri putative plant defensin PDF1.1 mRNA, complete cds Length = 431 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 121 aagtagtaataatcatcatgg 141 ||||||||||||||||||||| Sbjct: 23 aagtagtaataatcatcatgg 43
>dbj|AK079536.1| Mus musculus adult male hypothalamus cDNA, RIKEN full-length enriched library, clone:A230035L15 product:nucleolar protein 3 (apoptosis repressor with CARD domain) [Homo sapiens]., full insert sequence Length = 1620 Score = 42.1 bits (21), Expect = 1.5 Identities = 36/41 (87%) Strand = Plus / Minus Query: 352 cggctccggcttgggttcgggttcaggcttgggctctggct 392 |||||| |||| |||||||||||| |||| |||||| |||| Sbjct: 774 cggctcgggctcgggttcgggttctggctcgggctccggct 734
>dbj|AK053846.1| Mus musculus 0 day neonate eyeball cDNA, RIKEN full-length enriched library, clone:E130314L04 product:apoptosis repressor with CARD domain [Homo sapiens], full insert sequence Length = 2870 Score = 42.1 bits (21), Expect = 1.5 Identities = 36/41 (87%) Strand = Plus / Minus Query: 352 cggctccggcttgggttcgggttcaggcttgggctctggct 392 |||||| |||| |||||||||||| |||| |||||| |||| Sbjct: 743 cggctcgggctcgggttcgggttctggctcgggctccggct 703
>dbj|AK021023.1| Mus musculus 4 days neonate male adipose cDNA, RIKEN full-length enriched library, clone:B430311C09 product:apoptosis repressor with CARD domain [Homo sapiens], full insert sequence Length = 927 Score = 42.1 bits (21), Expect = 1.5 Identities = 36/41 (87%) Strand = Plus / Minus Query: 352 cggctccggcttgggttcgggttcaggcttgggctctggct 392 |||||| |||| |||||||||||| |||| |||||| |||| Sbjct: 688 cggctcgggctcgggttcgggttctggctcgggctccggct 648
>gb|AC117394.10| Homo sapiens 3 BAC RP11-529G21 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 198170 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 373 ttcaggcttgggctctggctt 393 ||||||||||||||||||||| Sbjct: 168340 ttcaggcttgggctctggctt 168360
>gb|AC017074.9| Homo sapiens BAC clone RP11-432G15 from 2, complete sequence Length = 142432 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 75 tcatgtgcacagatgaacgca 95 ||||||||||||||||||||| Sbjct: 62422 tcatgtgcacagatgaacgca 62402
>gb|AF198109.1|AF198109 Trichomonas vaginalis eukaryotic release factor 3 GTPase subunit (erf3) gene, complete cds Length = 2242 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 407 ggcttgggctctggttttggc 427 ||||||||||||||||||||| Sbjct: 585 ggcttgggctctggttttggc 565 Score = 40.1 bits (20), Expect = 5.9 Identities = 38/44 (86%) Strand = Plus / Minus Query: 383 ggctctggcttaggcatgggttgaggcttgggctctggttttgg 426 |||| ||||| |||| |||||| ||||| |||||||||||||| Sbjct: 537 ggctttggctcaggcttgggttctggctttggctctggttttgg 494
>emb|AJ234401.1|HVU234401 Hordeum vulgare partial mRNA; clone cMWG0646 Length = 694 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 406 aggcttgggctctggttttggcatt 430 ||||||||||||||| ||||||||| Sbjct: 689 aggcttgggctctggctttggcatt 665 Score = 42.1 bits (21), Expect = 1.5 Identities = 45/53 (84%) Strand = Plus / Minus Query: 365 ggttcgggttcaggcttgggctctggcttaggcatgggttgaggcttgggctc 417 |||| ||| |||||||| ||||| || || |||||||| | |||||||||||| Sbjct: 449 ggtttgggctcaggcttaggctcaggtttgggcatggggtaaggcttgggctc 397 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 376 aggcttgggctctggcttaggcat 399 |||||||||||||||||| ||||| Sbjct: 689 aggcttgggctctggctttggcat 666
>gb|BC027290.1| Mus musculus nucleolar protein 3 (apoptosis repressor with CARD domain), mRNA (cDNA clone MGC:27734 IMAGE:2647023), complete cds Length = 1022 Score = 42.1 bits (21), Expect = 1.5 Identities = 36/41 (87%) Strand = Plus / Minus Query: 352 cggctccggcttgggttcgggttcaggcttgggctctggct 392 |||||| |||| |||||||||||| |||| |||||| |||| Sbjct: 769 cggctcgggctcgggttcgggttctggctcgggctccggct 729
>gb|BC053971.1| Mus musculus nucleolar protein 3 (apoptosis repressor with CARD domain), mRNA (cDNA clone IMAGE:1397304) Length = 960 Score = 42.1 bits (21), Expect = 1.5 Identities = 36/41 (87%) Strand = Plus / Minus Query: 352 cggctccggcttgggttcgggttcaggcttgggctctggct 392 |||||| |||| |||||||||||| |||| |||||| |||| Sbjct: 714 cggctcgggctcgggttcgggttctggctcgggctccggct 674
>emb|AL732543.8| Mouse DNA sequence from clone RP23-13D22 on chromosome 4, complete sequence Length = 195272 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 168 gggatgatggaatacaaggaa 188 ||||||||||||||||||||| Sbjct: 77733 gggatgatggaatacaaggaa 77713
>ref|NM_123809.3| Arabidopsis thaliana PDF1.2 AT5G44420 (PDF1.2) mRNA, complete cds Length = 438 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 118 acaaagtagtaataatcatcatgg 141 ||||| |||||||||||||||||| Sbjct: 29 acaaaatagtaataatcatcatgg 52
>gb|U80815.2| Caenorhabditis elegans cosmid W02C12, complete sequence Length = 22847 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 389 ggcttaggcatgggttgaggcttgggct 416 |||||||||||||| |||||||| |||| Sbjct: 8200 ggcttaggcatgggctgaggcttaggct 8173
>gb|AC154426.2| Mus musculus BAC clone RP24-199A21 from chromosome 14, complete sequence Length = 210568 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 175 tggaatacaaggaatgcaaaaaag 198 |||||||||||| ||||||||||| Sbjct: 6876 tggaatacaaggcatgcaaaaaag 6853
>ref|XM_477690.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1057 Score = 40.1 bits (20), Expect = 5.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 365 ggttcgggttcaggcttgggctctggcttagg 396 |||| |||||||||||| ||||| |||||||| Sbjct: 660 ggtttgggttcaggctttggctccggcttagg 629
>ref|XM_360938.1| Magnaporthe grisea 70-15 hypothetical protein (MG03481.4) partial mRNA Length = 2076 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 365 ggttcgggttcaggcttggg 384 |||||||||||||||||||| Sbjct: 1358 ggttcgggttcaggcttggg 1339
>gb|AC104275.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1212_C10, complete sequence Length = 138209 Score = 40.1 bits (20), Expect = 5.9 Identities = 47/56 (83%) Strand = Plus / Plus Query: 371 ggttcaggcttgggctctggcttaggcatgggttgaggcttgggctctggttttgg 426 ||||||||||| |||||||| || ||| || || |||||||||||||| ||||| Sbjct: 83074 ggttcaggcttcggctctggttttggctccggctgtggcttgggctctggctttgg 83129
>ref|NM_003632.1| Homo sapiens contactin associated protein 1 (CNTNAP1), mRNA Length = 5293 Score = 40.1 bits (20), Expect = 5.9 Identities = 32/36 (88%) Strand = Plus / Minus Query: 352 cggctccggcttgggttcgggttcaggcttgggctc 387 ||||||||||| ||| ||| |||| ||||||||||| Sbjct: 180 cggctccggctagggctcgagttctggcttgggctc 145
>emb|Z93375.1|CEC38C6 Caenorhabditis elegans Cosmid C38C6, complete sequence Length = 25943 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 370 gggttcaggcttgggctctggcttaggc 397 |||||||||||| |||| |||||||||| Sbjct: 2139 gggttcaggcttaggctttggcttaggc 2112
>ref|XM_760578.1| Theileria parva strain Muguga chromosome 1 hypothetical protein (TP01_0144) partial mRNA Length = 3657 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 aaagtagtaataatcatcat 139 |||||||||||||||||||| Sbjct: 3006 aaagtagtaataatcatcat 2987
>ref|XM_949479.1| Theileria annulata strain Ankara hypothetical protein (TA19075) partial mRNA Length = 3639 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 aaagtagtaataatcatcat 139 |||||||||||||||||||| Sbjct: 2991 aaagtagtaataatcatcat 2972
>gb|AF036699.2| Caenorhabditis elegans cosmid F58F6, complete sequence Length = 43764 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 389 ggcttaggcatgggttgaggcttgggct 416 |||||||||||||||||| |||| |||| Sbjct: 30666 ggcttaggcatgggttgatgcttaggct 30639
>gb|AC147202.14| Medicago truncatula clone mth2-165g15, complete sequence Length = 116731 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 cacatattgtcattcatgta 32 |||||||||||||||||||| Sbjct: 92538 cacatattgtcattcatgta 92557
>emb|AL512635.8| Human DNA sequence from clone RP11-15P13 on chromosome 9 Contains a survival of motor neuron 1, telomeric (SMN1) pseudogene and the 3' end of the MLLT3 gene for myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3 (AF9), complete sequence Length = 178631 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 aataagatcatgtgtacata 56 |||||||||||||||||||| Sbjct: 63562 aataagatcatgtgtacata 63581
>gb|AC091204.3| Drosophila melanogaster 3L NOVECTOR RP98-27G13 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 185825 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 174 atggaatacaaggaatgcaaaaaa 197 |||||||||| ||||||||||||| Sbjct: 165497 atggaatacagggaatgcaaaaaa 165520
>gb|AY063779.1| Arabidopsis thaliana putative antifungal protein PDF1.2 (At5g44420) mRNA, complete cds Length = 454 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 118 acaaagtagtaataatcatcatgg 141 ||||| |||||||||||||||||| Sbjct: 29 acaaaatagtaataatcatcatgg 52
>gb|AC091221.3| Drosophila melanogaster 3L BAC RP98-9I19 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 185790 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 174 atggaatacaaggaatgcaaaaaa 197 |||||||||| ||||||||||||| Sbjct: 182112 atggaatacagggaatgcaaaaaa 182089
>gb|AY961378.1| Arabidopsis halleri putative plant defensin PDF1.3 mRNA, complete cds Length = 421 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 118 acaaagtagtaataatcatcatgg 141 ||||||||||||||||||| |||| Sbjct: 13 acaaagtagtaataatcattatgg 36
>gb|AY224438.1| Oryza sativa (japonica cultivar-group) isolate 23221 proline-rich protein mRNA, complete cds Length = 1251 Score = 40.1 bits (20), Expect = 5.9 Identities = 47/56 (83%) Strand = Plus / Minus Query: 371 ggttcaggcttgggctctggcttaggcatgggttgaggcttgggctctggttttgg 426 ||||||||||| |||||||| || ||| || || |||||||||||||| ||||| Sbjct: 1097 ggttcaggcttcggctctggttttggctccggctgtggcttgggctctggctttgg 1042
>ref|NM_061930.2| Caenorhabditis elegans F34D6.1 (F34D6.1) mRNA, complete cds Length = 1525 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 389 ggcttaggcatgggttgaggcttgggct 416 ||||||||| |||| ||||||||||||| Sbjct: 1431 ggcttaggcttgggctgaggcttgggct 1404
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 273 ggtcgatctcctcctccttcggct 296 ||||||||||||||||||| |||| Sbjct: 8641318 ggtcgatctcctcctcctttggct 8641295
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 281 tcctcctccttcggctgtca 300 |||||||||||||||||||| Sbjct: 301516 tcctcctccttcggctgtca 301497
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 5.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 365 ggttcgggttcaggcttgggctctggcttagg 396 |||| |||||||||||| ||||| |||||||| Sbjct: 13301053 ggtttgggttcaggctttggctccggcttagg 13301084
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 5.9 Identities = 47/56 (83%) Strand = Plus / Plus Query: 371 ggttcaggcttgggctctggcttaggcatgggttgaggcttgggctctggttttgg 426 ||||||||||| |||||||| || ||| || || |||||||||||||| ||||| Sbjct: 7646679 ggttcaggcttcggctctggttttggctccggctgtggcttgggctctggctttgg 7646734
>emb|BX005483.3| Zebrafish DNA sequence from clone CH211-286G12 in linkage group 23, complete sequence Length = 182479 Score = 40.1 bits (20), Expect = 5.9 Identities = 35/40 (87%) Strand = Plus / Plus Query: 353 ggctccggcttgggttcgggttcaggcttgggctctggct 392 ||||| |||| |||||||||||| |||| |||||| |||| Sbjct: 33139 ggctcgggctcgggttcgggttcgggctcgggctcgggct 33178
>gb|AE004965.1| Pseudomonas aeruginosa PAO1, section 526 of 529 of the complete genome Length = 10353 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 350 ggcggctccggcttgggttc 369 |||||||||||||||||||| Sbjct: 8235 ggcggctccggcttgggttc 8254
>gb|AC073912.38| Homo sapiens 12 BAC RP11-989F5 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 211550 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 178 aatacaaggaatgcaaaaaagatg 201 ||||||||||||||||| |||||| Sbjct: 209378 aatacaaggaatgcaaagaagatg 209401
>gb|AC100793.8| Homo sapiens chromosome 17, clone CTD-3193K9, complete sequence Length = 134465 Score = 40.1 bits (20), Expect = 5.9 Identities = 32/36 (88%) Strand = Plus / Minus Query: 352 cggctccggcttgggttcgggttcaggcttgggctc 387 ||||||||||| ||| ||| |||| ||||||||||| Sbjct: 20565 cggctccggctagggctcgagttctggcttgggctc 20530
>dbj|AP003745.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1123_B01 Length = 105736 Score = 40.1 bits (20), Expect = 5.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 365 ggttcgggttcaggcttgggctctggcttagg 396 |||| |||||||||||| ||||| |||||||| Sbjct: 15491 ggtttgggttcaggctttggctccggcttagg 15522
>dbj|AP004264.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0025D09 Length = 142593 Score = 40.1 bits (20), Expect = 5.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 365 ggttcgggttcaggcttgggctctggcttagg 396 |||| |||||||||||| ||||| |||||||| Sbjct: 88916 ggtttgggttcaggctttggctccggcttagg 88947
>dbj|AB017065.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MFC16 Length = 61290 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 118 acaaagtagtaataatcatcatgg 141 ||||| |||||||||||||||||| Sbjct: 21015 acaaaatagtaataatcatcatgg 20992
>dbj|AK105956.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-D07, full insert sequence Length = 1057 Score = 40.1 bits (20), Expect = 5.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 365 ggttcgggttcaggcttgggctctggcttagg 396 |||| |||||||||||| ||||| |||||||| Sbjct: 660 ggtttgggttcaggctttggctccggcttagg 629
>gb|AF025454.1| Caenorhabditis elegans cosmid F34D6, complete sequence Length = 23656 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 389 ggcttaggcatgggttgaggcttgggct 416 ||||||||| |||| ||||||||||||| Sbjct: 719 ggcttaggcttgggctgaggcttgggct 746
>gb|U87223.1|HSU87223 Homo sapiens contactin associated protein (Caspr) mRNA, complete cds Length = 5293 Score = 40.1 bits (20), Expect = 5.9 Identities = 32/36 (88%) Strand = Plus / Minus Query: 352 cggctccggcttgggttcgggttcaggcttgggctc 387 ||||||||||| ||| ||| |||| ||||||||||| Sbjct: 180 cggctccggctagggctcgagttctggcttgggctc 145
>gb|AE003557.4| Drosophila melanogaster chromosome 3L, section 28 of 83 of the complete sequence Length = 287988 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 174 atggaatacaaggaatgcaaaaaa 197 |||||||||| ||||||||||||| Sbjct: 273298 atggaatacagggaatgcaaaaaa 273321
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 281 tcctcctccttcggctgtca 300 |||||||||||||||||||| Sbjct: 301516 tcctcctccttcggctgtca 301497
>emb|AL731598.2|OSJN00248 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0065B15, complete sequence Length = 150007 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 273 ggtcgatctcctcctccttcggct 296 ||||||||||||||||||| |||| Sbjct: 101761 ggtcgatctcctcctcctttggct 101738
>emb|BX000501.4|CNS08CDR Oryza sativa chromosome 11, . BAC OSJNBa0032J07 of library OSJNBa from chromosome 11 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 160673 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 281 tcctcctccttcggctgtca 300 |||||||||||||||||||| Sbjct: 3477 tcctcctccttcggctgtca 3496
>emb|BX000497.1|CNS08CDN Oryza sativa chromosome 11, . BAC OSJNBa0010K05 of library OSJNBa from chromosome 11 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 164143 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 281 tcctcctccttcggctgtca 300 |||||||||||||||||||| Sbjct: 8834 tcctcctccttcggctgtca 8815
>gb|U23764.1|PAU23764 Pseudomonas aeruginosa TonB (tonB) gene, complete cds Length = 1200 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 350 ggcggctccggcttgggttc 369 |||||||||||||||||||| Sbjct: 593 ggcggctccggcttgggttc 574
>gb|AC166148.5| Cavia porcellus, clone Cavia porcellus-24948757J7, complete sequence Length = 40129 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 107 aaatgataattacaaagtagtaat 130 |||||||||||| ||||||||||| Sbjct: 36196 aaatgataattaaaaagtagtaat 36173
>gb|AF040654.3| Caenorhabditis elegans cosmid R06B10, complete sequence Length = 40468 Score = 40.1 bits (20), Expect = 5.9 Identities = 44/52 (84%) Strand = Plus / Minus Query: 376 aggcttgggctctggcttaggcatgggttgaggcttgggctctggttttggc 427 ||||||||||| || ||||||| | |||| |||||| ||||| || |||||| Sbjct: 9008 aggcttgggctttgacttaggctttggtttaggctttggctcaggctttggc 8957 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,402,770 Number of Sequences: 3902068 Number of extensions: 4402770 Number of successful extensions: 93946 Number of sequences better than 10.0: 72 Number of HSP's better than 10.0 without gapping: 69 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 93429 Number of HSP's gapped (non-prelim): 531 length of query: 440 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 418 effective length of database: 17,147,199,772 effective search space: 7167529504696 effective search space used: 7167529504696 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
