ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet119c05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1VASN_MOUSE (Q9CZT5) Vasorin precursor (Protein Slit-like 2) 33 0.41
2MATK_CUPAN (Q646R8) Maturase K (Intron maturase) 30 3.5
3SOMA_CAVPO (Q9JKM4) Somatotropin precursor (Growth hormone) 29 5.9
4ESR2_ICTPU (Q9IAK1) Estrogen receptor beta (ER-beta) 29 5.9
5ODO2_PSEPU (P31051) Dihydrolipoyllysine-residue succinyltransfer... 28 7.7

>VASN_MOUSE (Q9CZT5) Vasorin precursor (Protein Slit-like 2)|
          Length = 673

 Score = 32.7 bits (73), Expect = 0.41
 Identities = 16/57 (28%), Positives = 33/57 (57%), Gaps = 5/57 (8%)
 Frame = +2

Query: 92  GKIVDTHDHLLSKNKLKHEVAILVSLK-----LVIENLRIAMVKPRTRSGVIIFQEI 247
           G++++ HD  +S N+L+H  +++  L+      +  N RIA ++P   +G+   QE+
Sbjct: 214 GRLLNLHDLDVSDNQLEHMPSVIQGLRGLTRLRLAGNTRIAQIRPEDLAGLTALQEL 270



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>MATK_CUPAN (Q646R8) Maturase K (Intron maturase)|
          Length = 507

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
 Frame = -1

Query: 285 SDVELLHFFFHIIISWN-MITPER-VRGFTMAIRRF 184
           S + LL FF H   +WN +ITP++ + GF+ +  RF
Sbjct: 172 SSLHLLRFFLHEYFNWNSLITPKKSISGFSTSNPRF 207



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>SOMA_CAVPO (Q9JKM4) Somatotropin precursor (Growth hormone)|
          Length = 216

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = -1

Query: 303 QEAALQSDVELLHFFFHIIISW 238
           +EA  +SDVELLHF   +I SW
Sbjct: 90  EEAQQRSDVELLHFSLLLIQSW 111



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>ESR2_ICTPU (Q9IAK1) Estrogen receptor beta (ER-beta)|
          Length = 575

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = -1

Query: 444 SHDSHCAPEQGYFCRPGKVYTEARVCSSFVQPTSHRDHRH 325
           SH+ H  P     C P   Y+E  + +++V    H   RH
Sbjct: 78  SHNPHAMPALPLHCPPALPYSEPHIHTAWVDTKPHTSGRH 117



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>ODO2_PSEPU (P31051) Dihydrolipoyllysine-residue succinyltransferase component|
           of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61)
           (E2) (Dihydrolipoamide succinyltransferase component of
           2-oxoglutarate dehydrogenase complex) (Fragment)
          Length = 58

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +3

Query: 210 PELVRALSYSKR*LYGRKSEVILHQIATLLLDPSRFI 320
           P +  ALSY  R + G+++   L  I  LL DPSR +
Sbjct: 19  PMMYLALSYDHRLIDGKEAVTFLVTIKNLLEDPSRLL 55


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,778,830
Number of Sequences: 219361
Number of extensions: 1329208
Number of successful extensions: 3336
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3333
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2618960580
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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