ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet119c05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_472075.1| Oryza sativa (japonica cultivar-group), predic... 60 6e-06
2dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 60 6e-06
3emb|AL662967.2|OSJN00166 Oryza sativa genomic DNA, chromosome 4,... 60 6e-06
4ref|XM_472087.1| Oryza sativa (japonica cultivar-group), predic... 58 3e-05
5gb|AY661656.1| Sorghum bicolor clone BAC 88M4, complete sequence 52 0.002
6gb|AY013246.1| Hordeum vulgare chromosome 5 BAC 635P2, complete ... 44 0.38
7gb|AC107832.13| Mus musculus chromosome 1, clone RP23-231B19, co... 42 1.5
8gb|AC165260.2| Mus musculus BAC clone RP23-123E17 from chromosom... 42 1.5
9ref|XM_653084.1| Aspergillus nidulans FGSC A4 hypothetical prote... 42 1.5
10emb|CR936364.7| M.truncatula DNA sequence from clone MTH2-193I1 ... 42 1.5
11gb|AC114294.2| Homo sapiens chromosome 5 clone RP11-114J22, comp... 42 1.5
12gb|AC022103.5| Homo sapiens chromosome 5 clone CTC-254B4, comple... 42 1.5
13gb|AE017194.1| Bacillus cereus ATCC 10987, complete genome 42 1.5
14dbj|AP004485.1| Lotus japonicus genomic DNA, chromosome 2, clone... 42 1.5
15gb|AC123932.4| Mus musculus chromosome 12 clone RP23-310F15, com... 40 6.0
16ref|XM_637486.1| Dictyostelium discoideum hypothetical protein (... 40 6.0
17gb|AY350711.1| Sisymbrium irio clone BAC Sio11E11, complete sequ... 40 6.0
18gb|AC102790.7| Mus musculus chromosome 19, clone RP23-321D22, co... 40 6.0
19emb|CR555306.1| Azoarcus sp. EbN1 complete genome 40 6.0
20emb|BX119969.4| Mouse DNA sequence from clone RP23-58N9 on chrom... 40 6.0
21emb|BX569781.7| Zebrafish DNA sequence from clone DKEY-72L18 in ... 40 6.0
22gb|AC157493.3| Mus musculus BAC clone RP23-321K7 from chromosome... 40 6.0
23gb|AC013471.7| Homo sapiens BAC clone RP11-489A14 from 2, comple... 40 6.0
24gb|AC010895.8| Homo sapiens BAC clone RP11-494H5 from 2, complet... 40 6.0
25gb|AC116100.2| Dictyostelium discoideum chromosome 2 map 6163571... 40 6.0
26dbj|BA000001.2| Pyrococcus horikoshii OT3 DNA, complete genome 40 6.0
27dbj|AP006639.1| Lotus japonicus genomic DNA, chromosome 3, clone... 40 6.0 
>ref|XM_472075.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1989

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 66/78 (84%)
 Strand = Plus / Minus

                                                                        
Query: 363  acgagcaaaccctcgcctccgtgtacacctttccgggcctgcagaaatatccttgttccg 422
            ||||||| ||||||||||| ||| ||||||| || |||| |||||| || ||  | ||||
Sbjct: 1891 acgagcagaccctcgcctcggtgaacaccttccccggccggcagaagtagcccagctccg 1832

                              
Query: 423  gcgcgcaatgcgagtcgt 440
            ||||||| ||||||||||
Sbjct: 1831 gcgcgcagtgcgagtcgt 1814
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 66/78 (84%)
 Strand = Plus / Plus

                                                                            
Query: 363      acgagcaaaccctcgcctccgtgtacacctttccgggcctgcagaaatatccttgttccg 422
                ||||||| ||||||||||| ||| ||||||| || |||| |||||| || ||  | ||||
Sbjct: 17269103 acgagcagaccctcgcctcggtgaacaccttccccggccggcagaagtagcccagctccg 17269162

                                  
Query: 423      gcgcgcaatgcgagtcgt 440
                ||||||| ||||||||||
Sbjct: 17269163 gcgcgcagtgcgagtcgt 17269180



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 65/77 (84%)
 Strand = Plus / Minus

                                                                            
Query: 364      cgagcaaaccctcgcctccgtgtacacctttccgggcctgcagaaatatccttgttccgg 423
                |||||| ||||||||| ||||| ||||||| || |||| |||||| || || |  |||||
Sbjct: 17331132 cgagcacaccctcgccgccgtgaacaccttccccggccggcagaagtagcccttctccgg 17331073

                                 
Query: 424      cgcgcaatgcgagtcgt 440
                |||||| ||||||||||
Sbjct: 17331072 cgcgcagtgcgagtcgt 17331056
to top
>emb|AL662967.2|OSJN00166 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0034E24,
             complete sequence
          Length = 152220

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 66/78 (84%)
 Strand = Plus / Plus

                                                                         
Query: 363   acgagcaaaccctcgcctccgtgtacacctttccgggcctgcagaaatatccttgttccg 422
             ||||||| ||||||||||| ||| ||||||| || |||| |||||| || ||  | ||||
Sbjct: 69327 acgagcagaccctcgcctcggtgaacaccttccccggccggcagaagtagcccagctccg 69386

                               
Query: 423   gcgcgcaatgcgagtcgt 440
             ||||||| ||||||||||
Sbjct: 69387 gcgcgcagtgcgagtcgt 69404



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 65/77 (84%)
 Strand = Plus / Minus

                                                                          
Query: 364    cgagcaaaccctcgcctccgtgtacacctttccgggcctgcagaaatatccttgttccgg 423
              |||||| ||||||||| ||||| ||||||| || |||| |||||| || || |  |||||
Sbjct: 131356 cgagcacaccctcgccgccgtgaacaccttccccggccggcagaagtagcccttctccgg 131297

                               
Query: 424    cgcgcaatgcgagtcgt 440
              |||||| ||||||||||
Sbjct: 131296 cgcgcagtgcgagtcgt 131280
to top
>ref|XM_472087.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1773

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 65/77 (84%)
 Strand = Plus / Minus

                                                                        
Query: 364  cgagcaaaccctcgcctccgtgtacacctttccgggcctgcagaaatatccttgttccgg 423
            |||||| ||||||||| ||||| ||||||| || |||| |||||| || || |  |||||
Sbjct: 1704 cgagcacaccctcgccgccgtgaacaccttccccggccggcagaagtagcccttctccgg 1645

                             
Query: 424  cgcgcaatgcgagtcgt 440
            |||||| ||||||||||
Sbjct: 1644 cgcgcagtgcgagtcgt 1628
to top
>gb|AY661656.1| Sorghum bicolor clone BAC 88M4, complete sequence
          Length = 279448

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 59/70 (84%)
 Strand = Plus / Minus

                                                                         
Query: 371   accctcgcctccgtgtacacctttccgggcctgcagaaatatccttgttccggcgcgcaa 430
             ||||| |||||| |||| ||||| || |||| |||||| ||||| |  ||||||||||| 
Sbjct: 66768 accctggcctccatgtaaaccttcccaggccggcagaagtatcccttctccggcgcgcag 66709

                       
Query: 431   tgcgagtcgt 440
             ||||||||||
Sbjct: 66708 tgcgagtcgt 66699
to top
>gb|AY013246.1| Hordeum vulgare chromosome 5 BAC 635P2, complete sequence
          Length = 102433

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 40    accatggcaaatcgaacgtttt 61
             ||||||||||||||||||||||
Sbjct: 84121 accatggcaaatcgaacgtttt 84100
to top
>gb|AC107832.13| Mus musculus chromosome 1, clone RP23-231B19, complete sequence
          Length = 190541

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 237    tccaagagataattatatgga 257
              |||||||||||||||||||||
Sbjct: 127862 tccaagagataattatatgga 127842
to top
>gb|AC165260.2| Mus musculus BAC clone RP23-123E17 from chromosome 13, complete sequence
          Length = 209914

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 254    tggaagaaaaagtgaagtaattcta 278
              ||||||||||||||| |||||||||
Sbjct: 181135 tggaagaaaaagtgaggtaattcta 181159
to top
>ref|XM_653084.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN0572.2), mRNA
          Length = 2067

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 396  cgggcctgcagaaatatcctt 416
            |||||||||||||||||||||
Sbjct: 1514 cgggcctgcagaaatatcctt 1494
to top
>emb|CR936364.7| M.truncatula DNA sequence from clone MTH2-193I1 on chromosome 3,
             complete sequence
          Length = 119364

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 254   tggaagaaaaagtgaagtaat 274
             |||||||||||||||||||||
Sbjct: 41216 tggaagaaaaagtgaagtaat 41196
to top
>gb|AC114294.2| Homo sapiens chromosome 5 clone RP11-114J22, complete sequence
          Length = 69490

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 250  tatatggaagaaaaagtgaag 270
            |||||||||||||||||||||
Sbjct: 3840 tatatggaagaaaaagtgaag 3820
to top
>gb|AC022103.5| Homo sapiens chromosome 5 clone CTC-254B4, complete sequence
          Length = 129175

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 250    tatatggaagaaaaagtgaag 270
              |||||||||||||||||||||
Sbjct: 113059 tatatggaagaaaaagtgaag 113039
to top
>gb|AE017194.1| Bacillus cereus ATCC 10987, complete genome
          Length = 5224283

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 282     cagattgcaacgctgcttctt 302
               |||||||||||||||||||||
Sbjct: 1780130 cagattgcaacgctgcttctt 1780110
to top
>dbj|AP004485.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT08D14, TM0018,
             complete sequence
          Length = 86539

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 247   aattatatggaagaaaaagtgaagt 271
             |||||||||||||| ||||||||||
Sbjct: 18960 aattatatggaagagaaagtgaagt 18936
to top
>gb|AC123932.4| Mus musculus chromosome 12 clone RP23-310F15, complete sequence
          Length = 163312

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 252   tatggaagaaaaagtgaagt 271
             ||||||||||||||||||||
Sbjct: 88814 tatggaagaaaaagtgaagt 88795
to top
>ref|XM_637486.1| Dictyostelium discoideum hypothetical protein (DDB0169333), partial
            mRNA
          Length = 3447

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 8    ggaaattataaatcccgaacattc 31
            |||||||||||| |||||||||||
Sbjct: 1311 ggaaattataaaacccgaacattc 1334
to top
>gb|AY350711.1| Sisymbrium irio clone BAC Sio11E11, complete sequence
          Length = 95357

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 259   gaaaaagtgaagtaattctacatcagattgca 290
             |||| ||| ||||||||||||||| |||||||
Sbjct: 32916 gaaagagttaagtaattctacatctgattgca 32947
to top
>gb|AC102790.7| Mus musculus chromosome 19, clone RP23-321D22, complete sequence
          Length = 242249

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 63    gatgtgaattcaagcagtga 82
             ||||||||||||||||||||
Sbjct: 76142 gatgtgaattcaagcagtga 76161
to top
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
          Length = 4296230

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 362    gacgagcaaaccctcgcctccgtg 385
              |||||||||||||||||| |||||
Sbjct: 435413 gacgagcaaaccctcgccgccgtg 435436
to top
>emb|BX119969.4| Mouse DNA sequence from clone RP23-58N9 on chromosome 13, complete
             sequence
          Length = 52119

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 118   tttgctgtcaaaaaataaactgaa 141
             ||||||||||||| ||||||||||
Sbjct: 31127 tttgctgtcaaaatataaactgaa 31150
to top
>emb|BX569781.7| Zebrafish DNA sequence from clone DKEY-72L18 in linkage group 17,
              complete sequence
          Length = 170138

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 251    atatggaagaaaaagtgaag 270
              ||||||||||||||||||||
Sbjct: 126646 atatggaagaaaaagtgaag 126627
to top
>gb|AC157493.3| Mus musculus BAC clone RP23-321K7 from chromosome 13, complete sequence
          Length = 184868

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 118   tttgctgtcaaaaaataaactgaa 141
             ||||||||||||| ||||||||||
Sbjct: 34881 tttgctgtcaaaatataaactgaa 34858
to top
>gb|AC013471.7| Homo sapiens BAC clone RP11-489A14 from 2, complete sequence
          Length = 145040

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 255   ggaagaaaaagtgaagtaat 274
             ||||||||||||||||||||
Sbjct: 97436 ggaagaaaaagtgaagtaat 97417
to top
>gb|AC010895.8| Homo sapiens BAC clone RP11-494H5 from 2, complete sequence
          Length = 200363

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 245    ataattatatggaagaaaaa 264
              ||||||||||||||||||||
Sbjct: 196654 ataattatatggaagaaaaa 196673
to top
>gb|AC116100.2| Dictyostelium discoideum chromosome 2 map 6163571-6199719 strain AX4,
             complete sequence
          Length = 36148

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 8     ggaaattataaatcccgaacattc 31
             |||||||||||| |||||||||||
Sbjct: 31889 ggaaattataaaacccgaacattc 31912
to top
>dbj|BA000001.2| Pyrococcus horikoshii OT3 DNA, complete genome
          Length = 1738505

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 251    atatggaagaaaaagtgaag 270
              ||||||||||||||||||||
Sbjct: 103902 atatggaagaaaaagtgaag 103883
to top
>dbj|AP006639.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT25N16, TM0216,
             complete sequence
          Length = 95667

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 261   aaaagtgaagtaattctaca 280
             ||||||||||||||||||||
Sbjct: 14000 aaaagtgaagtaattctaca 13981


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,144,150
Number of Sequences: 3902068
Number of extensions: 4144150
Number of successful extensions: 296004
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 295877
Number of HSP's gapped (non-prelim): 127
length of query: 444
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 422
effective length of database: 17,147,199,772
effective search space: 7236118303784
effective search space used: 7236118303784
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top