No.
Definition
Score (bits)
E Value
1 gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
100
7e-18
2 gb|AC139168.1| Oryza sativa (japonica cultivar-group) chromosome...
100
7e-18
3 gb|AC135208.3| Oryza sativa (japonica cultivar-group) chromosome...
100
7e-18
4 dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D...
100
7e-18
5 dbj|AK073140.1| Oryza sativa (japonica cultivar-group) cDNA clon...
100
7e-18
6 dbj|AK063856.1| Oryza sativa (japonica cultivar-group) cDNA clon...
100
7e-18
7 dbj|AK058806.1| Oryza sativa (japonica cultivar-group) cDNA clon...
100
7e-18
8 gb|BT019079.1| Zea mays clone Contig661.F mRNA sequence
68
2e-08
9 gb|BT016437.1| Zea mays clone Contig270 mRNA sequence
68
2e-08
10 gb|AY109296.1| Zea mays PCO117045 mRNA sequence
68
2e-08
11 gb|BT024094.1| Zea mays clone EL01N0530G01 mRNA sequence
52
0.001
12 emb|CR380950.1| Candida glabrata strain CBS138 chromosome D comp...
42
1.3
13 emb|AL731688.14| Mouse DNA sequence from clone RP23-291K6 on chr...
42
1.3
14 gb|AC010061.6| Drosophila melanogaster 3L BAC RP98-11F16 (Roswel...
42
1.3
15 gb|AE003531.3| Drosophila melanogaster chromosome 3L, section 54...
42
1.3
16 gb|AE017198.1| Lactobacillus johnsonii NCC 533, complete genome
42
1.3
17 gb|AY726585.1| Homo sapiens clone MO-01 mRNA sequence
40
5.3
18 gb|AC123665.9| Mus musculus chromosome 14, clone RP23-226A4, com...
40
5.3
19 gb|BC049155.1| Mus musculus F-box only protein 34, mRNA (cDNA cl...
40
5.3
20 gb|AC124502.4| Mus musculus BAC clone RP23-414G6 from chromosome...
40
5.3
21 gb|AC125539.4| Mus musculus BAC clone RP23-150M18 from 15, compl...
40
5.3
22 gb|BC048149.1| Mus musculus F-box only protein 34, mRNA (cDNA cl...
40
5.3
23 emb|AL136958.9| Human DNA sequence from clone RP11-147L20 on chr...
40
5.3
24 gb|AC136297.6| Homo sapiens chromosome 11, clone CTD-2245O6, com...
40
5.3
25 emb|AL928645.6| Mouse DNA sequence from clone RP23-452N23 on chr...
40
5.3
26 emb|CR354424.7| Zebrafish DNA sequence from clone CH211-125L9 in...
40
5.3
27 dbj|AK171630.1| Mus musculus activated spleen cDNA, RIKEN full-l...
40
5.3
28 dbj|AK013711.1| Mus musculus adult male hippocampus cDNA, RIKEN ...
40
5.3
29 dbj|AK045953.1| Mus musculus adult male corpora quadrigemina cDN...
40
5.3
30 dbj|AK030317.1| Mus musculus 11 days pregnant adult female ovary...
40
5.3
31 gb|AC091196.6| Homo sapiens chromosome 11, clone RP11-371C18, co...
40
5.3
32 gb|AC121540.14| Mus musculus chromosome 3, clone RP23-48L9, comp...
40
5.3
33 dbj|BA000003.2| Buchnera aphidicola str. APS (Acyrthosiphon pisu...
40
5.3
34 gb|AC119177.11| Mus musculus chromosome 15, clone RP24-559L16, c...
40
5.3
35 dbj|AP001107.5| Homo sapiens genomic DNA, chromosome 11q clone:R...
40
5.3
36 emb|CT573040.5| Wallaby DNA sequence from clone MEKBa-454A14, co...
40
5.3
37 gb|AC155158.15| Mus musculus chromosome 3, clone RP24-70L3, comp...
40
5.3
38 gb|AC164977.2| Mus musculus BAC clone RP23-446B6 from chromosome...
40
5.3
>gb|DP000009.1 | Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 99.6 bits (50), Expect = 7e-18
Identities = 88/100 (88%), Gaps = 3/100 (3%)
Strand = Plus / Minus
Query: 279 tccagaccaactgttagaaatgatattatttgacttctccagtagaactagcccaatgct 338
|||||||||||||||||| ||||||||||||| ||||||| |||||| |||||||||| |
Sbjct: 8861569 tccagaccaactgttagatatgatattatttggcttctccggtagaattagcccaatgtt 8861510
Query: 339 gcctcttcaagcctagcgcctgcatgttggtgtcttgatg 378
| ||||||||||| |||||||| |||| ||||| ||||
Sbjct: 8861509 g---cttcaagcctaacgcctgcacgttgatgtctagatg 8861473
Score = 87.7 bits (44), Expect = 3e-14
Identities = 56/60 (93%)
Strand = Plus / Minus
Query: 168 gtcaattgcaaacttcagccttccataatcaatatatctacagctacaagatagtttcac 227
|||||||| ||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct: 8861682 gtcaattggcaacttcatccttccataatcaatatatctacatctacaagatagtttcac 8861623
Score = 58.0 bits (29), Expect = 2e-05
Identities = 42/45 (93%), Gaps = 1/45 (2%)
Strand = Plus / Minus
Query: 72 aagtgatacatgtgctttttaaatagtggaactcccaaacagaaa 116
||||||||||||||||||| |||||||| |||| |||||||||||
Sbjct: 8861771 aagtgatacatgtgctttt-aaatagtgaaactaccaaacagaaa 8861728
Score = 40.1 bits (20), Expect = 5.3
Identities = 29/31 (93%), Gaps = 2/31 (6%)
Strand = Plus / Minus
Query: 7 aactcatccaatattttgcttacaagcaaca 37
|||||||||||| |||||||||||||||||
Sbjct: 8861841 aactcatccaat--tttgcttacaagcaaca 8861813
>gb|AC139168.1 | Oryza sativa (japonica cultivar-group) chromosome 3 clone OJA1364E02,
complete sequence
Length = 126027
Score = 99.6 bits (50), Expect = 7e-18
Identities = 88/100 (88%), Gaps = 3/100 (3%)
Strand = Plus / Minus
Query: 279 tccagaccaactgttagaaatgatattatttgacttctccagtagaactagcccaatgct 338
|||||||||||||||||| ||||||||||||| ||||||| |||||| |||||||||| |
Sbjct: 52457 tccagaccaactgttagatatgatattatttggcttctccggtagaattagcccaatgtt 52398
Query: 339 gcctcttcaagcctagcgcctgcatgttggtgtcttgatg 378
| ||||||||||| |||||||| |||| ||||| ||||
Sbjct: 52397 g---cttcaagcctaacgcctgcacgttgatgtctagatg 52361
Score = 87.7 bits (44), Expect = 3e-14
Identities = 56/60 (93%)
Strand = Plus / Minus
Query: 168 gtcaattgcaaacttcagccttccataatcaatatatctacagctacaagatagtttcac 227
|||||||| ||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct: 52570 gtcaattggcaacttcatccttccataatcaatatatctacatctacaagatagtttcac 52511
Score = 58.0 bits (29), Expect = 2e-05
Identities = 42/45 (93%), Gaps = 1/45 (2%)
Strand = Plus / Minus
Query: 72 aagtgatacatgtgctttttaaatagtggaactcccaaacagaaa 116
||||||||||||||||||| |||||||| |||| |||||||||||
Sbjct: 52659 aagtgatacatgtgctttt-aaatagtgaaactaccaaacagaaa 52616
Score = 40.1 bits (20), Expect = 5.3
Identities = 29/31 (93%), Gaps = 2/31 (6%)
Strand = Plus / Minus
Query: 7 aactcatccaatattttgcttacaagcaaca 37
|||||||||||| |||||||||||||||||
Sbjct: 52729 aactcatccaat--tttgcttacaagcaaca 52701
>gb|AC135208.3 | Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1364E02,
complete sequence
Length = 112265
Score = 99.6 bits (50), Expect = 7e-18
Identities = 88/100 (88%), Gaps = 3/100 (3%)
Strand = Plus / Minus
Query: 279 tccagaccaactgttagaaatgatattatttgacttctccagtagaactagcccaatgct 338
|||||||||||||||||| ||||||||||||| ||||||| |||||| |||||||||| |
Sbjct: 104722 tccagaccaactgttagatatgatattatttggcttctccggtagaattagcccaatgtt 104663
Query: 339 gcctcttcaagcctagcgcctgcatgttggtgtcttgatg 378
| ||||||||||| |||||||| |||| ||||| ||||
Sbjct: 104662 g---cttcaagcctaacgcctgcacgttgatgtctagatg 104626
Score = 87.7 bits (44), Expect = 3e-14
Identities = 56/60 (93%)
Strand = Plus / Minus
Query: 168 gtcaattgcaaacttcagccttccataatcaatatatctacagctacaagatagtttcac 227
|||||||| ||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct: 104835 gtcaattggcaacttcatccttccataatcaatatatctacatctacaagatagtttcac 104776
Score = 58.0 bits (29), Expect = 2e-05
Identities = 42/45 (93%), Gaps = 1/45 (2%)
Strand = Plus / Minus
Query: 72 aagtgatacatgtgctttttaaatagtggaactcccaaacagaaa 116
||||||||||||||||||| |||||||| |||| |||||||||||
Sbjct: 104924 aagtgatacatgtgctttt-aaatagtgaaactaccaaacagaaa 104881
Score = 40.1 bits (20), Expect = 5.3
Identities = 29/31 (93%), Gaps = 2/31 (6%)
Strand = Plus / Minus
Query: 7 aactcatccaatattttgcttacaagcaaca 37
|||||||||||| |||||||||||||||||
Sbjct: 104994 aactcatccaat--tttgcttacaagcaaca 104966
>dbj|AP008209.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 99.6 bits (50), Expect = 7e-18
Identities = 88/100 (88%), Gaps = 3/100 (3%)
Strand = Plus / Minus
Query: 279 tccagaccaactgttagaaatgatattatttgacttctccagtagaactagcccaatgct 338
|||||||||||||||||| ||||||||||||| ||||||| |||||| |||||||||| |
Sbjct: 8859404 tccagaccaactgttagatatgatattatttggcttctccggtagaattagcccaatgtt 8859345
Query: 339 gcctcttcaagcctagcgcctgcatgttggtgtcttgatg 378
| ||||||||||| |||||||| |||| ||||| ||||
Sbjct: 8859344 g---cttcaagcctaacgcctgcacgttgatgtctagatg 8859308
Score = 87.7 bits (44), Expect = 3e-14
Identities = 56/60 (93%)
Strand = Plus / Minus
Query: 168 gtcaattgcaaacttcagccttccataatcaatatatctacagctacaagatagtttcac 227
|||||||| ||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct: 8859517 gtcaattggcaacttcatccttccataatcaatatatctacatctacaagatagtttcac 8859458
Score = 58.0 bits (29), Expect = 2e-05
Identities = 42/45 (93%), Gaps = 1/45 (2%)
Strand = Plus / Minus
Query: 72 aagtgatacatgtgctttttaaatagtggaactcccaaacagaaa 116
||||||||||||||||||| |||||||| |||| |||||||||||
Sbjct: 8859606 aagtgatacatgtgctttt-aaatagtgaaactaccaaacagaaa 8859563
Score = 40.1 bits (20), Expect = 5.3
Identities = 29/31 (93%), Gaps = 2/31 (6%)
Strand = Plus / Minus
Query: 7 aactcatccaatattttgcttacaagcaaca 37
|||||||||||| |||||||||||||||||
Sbjct: 8859676 aactcatccaat--tttgcttacaagcaaca 8859648
>dbj|AK073140.1 | Oryza sativa (japonica cultivar-group) cDNA clone:J033022I01, full
insert sequence
Length = 1621
Score = 99.6 bits (50), Expect = 7e-18
Identities = 88/100 (88%), Gaps = 3/100 (3%)
Strand = Plus / Minus
Query: 279 tccagaccaactgttagaaatgatattatttgacttctccagtagaactagcccaatgct 338
|||||||||||||||||| ||||||||||||| ||||||| |||||| |||||||||| |
Sbjct: 1245 tccagaccaactgttagatatgatattatttggcttctccggtagaattagcccaatgtt 1186
Query: 339 gcctcttcaagcctagcgcctgcatgttggtgtcttgatg 378
| ||||||||||| |||||||| |||| ||||| ||||
Sbjct: 1185 g---cttcaagcctaacgcctgcacgttgatgtctagatg 1149
Score = 87.7 bits (44), Expect = 3e-14
Identities = 56/60 (93%)
Strand = Plus / Minus
Query: 168 gtcaattgcaaacttcagccttccataatcaatatatctacagctacaagatagtttcac 227
|||||||| ||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1358 gtcaattggcaacttcatccttccataatcaatatatctacatctacaagatagtttcac 1299
Score = 58.0 bits (29), Expect = 2e-05
Identities = 42/45 (93%), Gaps = 1/45 (2%)
Strand = Plus / Minus
Query: 72 aagtgatacatgtgctttttaaatagtggaactcccaaacagaaa 116
||||||||||||||||||| |||||||| |||| |||||||||||
Sbjct: 1447 aagtgatacatgtgctttt-aaatagtgaaactaccaaacagaaa 1404
Score = 40.1 bits (20), Expect = 5.3
Identities = 29/31 (93%), Gaps = 2/31 (6%)
Strand = Plus / Minus
Query: 7 aactcatccaatattttgcttacaagcaaca 37
|||||||||||| |||||||||||||||||
Sbjct: 1517 aactcatccaat--tttgcttacaagcaaca 1489
>dbj|AK063856.1 | Oryza sativa (japonica cultivar-group) cDNA clone:001-122-D05, full
insert sequence
Length = 1022
Score = 99.6 bits (50), Expect = 7e-18
Identities = 88/100 (88%), Gaps = 3/100 (3%)
Strand = Plus / Minus
Query: 279 tccagaccaactgttagaaatgatattatttgacttctccagtagaactagcccaatgct 338
|||||||||||||||||| ||||||||||||| ||||||| |||||| |||||||||| |
Sbjct: 537 tccagaccaactgttagatatgatattatttggcttctccggtagaattagcccaatgtt 478
Query: 339 gcctcttcaagcctagcgcctgcatgttggtgtcttgatg 378
| ||||||||||| |||||||| |||| ||||| ||||
Sbjct: 477 g---cttcaagcctaacgcctgcacgttgatgtctagatg 441
Score = 87.7 bits (44), Expect = 3e-14
Identities = 56/60 (93%)
Strand = Plus / Minus
Query: 168 gtcaattgcaaacttcagccttccataatcaatatatctacagctacaagatagtttcac 227
|||||||| ||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct: 650 gtcaattggcaacttcatccttccataatcaatatatctacatctacaagatagtttcac 591
Score = 58.0 bits (29), Expect = 2e-05
Identities = 42/45 (93%), Gaps = 1/45 (2%)
Strand = Plus / Minus
Query: 72 aagtgatacatgtgctttttaaatagtggaactcccaaacagaaa 116
||||||||||||||||||| |||||||| |||| |||||||||||
Sbjct: 739 aagtgatacatgtgctttt-aaatagtgaaactaccaaacagaaa 696
Score = 40.1 bits (20), Expect = 5.3
Identities = 29/31 (93%), Gaps = 2/31 (6%)
Strand = Plus / Minus
Query: 7 aactcatccaatattttgcttacaagcaaca 37
|||||||||||| |||||||||||||||||
Sbjct: 809 aactcatccaat--tttgcttacaagcaaca 781
>dbj|AK058806.1 | Oryza sativa (japonica cultivar-group) cDNA clone:001-003-C02, full
insert sequence
Length = 537
Score = 99.6 bits (50), Expect = 7e-18
Identities = 88/100 (88%), Gaps = 3/100 (3%)
Strand = Plus / Minus
Query: 279 tccagaccaactgttagaaatgatattatttgacttctccagtagaactagcccaatgct 338
|||||||||||||||||| ||||||||||||| ||||||| |||||| |||||||||| |
Sbjct: 200 tccagaccaactgttagatatgatattatttggcttctccggtagaattagcccaatgtt 141
Query: 339 gcctcttcaagcctagcgcctgcatgttggtgtcttgatg 378
| ||||||||||| |||||||| |||| ||||| ||||
Sbjct: 140 g---cttcaagcctaacgcctgcacgttgatgtctagatg 104
Score = 87.7 bits (44), Expect = 3e-14
Identities = 56/60 (93%)
Strand = Plus / Minus
Query: 168 gtcaattgcaaacttcagccttccataatcaatatatctacagctacaagatagtttcac 227
|||||||| ||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct: 313 gtcaattggcaacttcatccttccataatcaatatatctacatctacaagatagtttcac 254
Score = 58.0 bits (29), Expect = 2e-05
Identities = 42/45 (93%), Gaps = 1/45 (2%)
Strand = Plus / Minus
Query: 72 aagtgatacatgtgctttttaaatagtggaactcccaaacagaaa 116
||||||||||||||||||| |||||||| |||| |||||||||||
Sbjct: 402 aagtgatacatgtgctttt-aaatagtgaaactaccaaacagaaa 359
Score = 40.1 bits (20), Expect = 5.3
Identities = 29/31 (93%), Gaps = 2/31 (6%)
Strand = Plus / Minus
Query: 7 aactcatccaatattttgcttacaagcaaca 37
|||||||||||| |||||||||||||||||
Sbjct: 472 aactcatccaat--tttgcttacaagcaaca 444
>gb|AC164977.2 | Mus musculus BAC clone RP23-446B6 from chromosome 14, complete sequence
Length = 179146
Score = 40.1 bits (20), Expect = 5.3
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 31 agcaacacaaacacaggctt 50
||||||||||||||||||||
Sbjct: 122102 agcaacacaaacacaggctt 122083
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,053,434
Number of Sequences: 3902068
Number of extensions: 4053434
Number of successful extensions: 71544
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 71381
Number of HSP's gapped (non-prelim): 149
length of query: 396
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 374
effective length of database: 17,147,199,772
effective search space: 6413052714728
effective search space used: 6413052714728
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)