ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet119c03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 100 7e-18
2gb|AC139168.1| Oryza sativa (japonica cultivar-group) chromosome... 100 7e-18
3gb|AC135208.3| Oryza sativa (japonica cultivar-group) chromosome... 100 7e-18
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 100 7e-18
5dbj|AK073140.1| Oryza sativa (japonica cultivar-group) cDNA clon... 100 7e-18
6dbj|AK063856.1| Oryza sativa (japonica cultivar-group) cDNA clon... 100 7e-18
7dbj|AK058806.1| Oryza sativa (japonica cultivar-group) cDNA clon... 100 7e-18
8gb|BT019079.1| Zea mays clone Contig661.F mRNA sequence 68 2e-08
9gb|BT016437.1| Zea mays clone Contig270 mRNA sequence 68 2e-08
10gb|AY109296.1| Zea mays PCO117045 mRNA sequence 68 2e-08
11gb|BT024094.1| Zea mays clone EL01N0530G01 mRNA sequence 52 0.001
12emb|CR380950.1| Candida glabrata strain CBS138 chromosome D comp... 42 1.3
13emb|AL731688.14| Mouse DNA sequence from clone RP23-291K6 on chr... 42 1.3
14gb|AC010061.6| Drosophila melanogaster 3L BAC RP98-11F16 (Roswel... 42 1.3
15gb|AE003531.3| Drosophila melanogaster chromosome 3L, section 54... 42 1.3
16gb|AE017198.1| Lactobacillus johnsonii NCC 533, complete genome 42 1.3
17gb|AY726585.1| Homo sapiens clone MO-01 mRNA sequence 40 5.3
18gb|AC123665.9| Mus musculus chromosome 14, clone RP23-226A4, com... 40 5.3
19gb|BC049155.1| Mus musculus F-box only protein 34, mRNA (cDNA cl... 40 5.3
20gb|AC124502.4| Mus musculus BAC clone RP23-414G6 from chromosome... 40 5.3
21gb|AC125539.4| Mus musculus BAC clone RP23-150M18 from 15, compl... 40 5.3
22gb|BC048149.1| Mus musculus F-box only protein 34, mRNA (cDNA cl... 40 5.3
23emb|AL136958.9| Human DNA sequence from clone RP11-147L20 on chr... 40 5.3
24gb|AC136297.6| Homo sapiens chromosome 11, clone CTD-2245O6, com... 40 5.3
25emb|AL928645.6| Mouse DNA sequence from clone RP23-452N23 on chr... 40 5.3
26emb|CR354424.7| Zebrafish DNA sequence from clone CH211-125L9 in... 40 5.3
27dbj|AK171630.1| Mus musculus activated spleen cDNA, RIKEN full-l... 40 5.3
28dbj|AK013711.1| Mus musculus adult male hippocampus cDNA, RIKEN ... 40 5.3
29dbj|AK045953.1| Mus musculus adult male corpora quadrigemina cDN... 40 5.3
30dbj|AK030317.1| Mus musculus 11 days pregnant adult female ovary... 40 5.3
31gb|AC091196.6| Homo sapiens chromosome 11, clone RP11-371C18, co... 40 5.3
32gb|AC121540.14| Mus musculus chromosome 3, clone RP23-48L9, comp... 40 5.3
33dbj|BA000003.2| Buchnera aphidicola str. APS (Acyrthosiphon pisu... 40 5.3
34gb|AC119177.11| Mus musculus chromosome 15, clone RP24-559L16, c... 40 5.3
35dbj|AP001107.5| Homo sapiens genomic DNA, chromosome 11q clone:R... 40 5.3
36emb|CT573040.5| Wallaby DNA sequence from clone MEKBa-454A14, co... 40 5.3
37gb|AC155158.15| Mus musculus chromosome 3, clone RP24-70L3, comp... 40 5.3
38gb|AC164977.2| Mus musculus BAC clone RP23-446B6 from chromosome... 40 5.3

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 99.6 bits (50), Expect = 7e-18
 Identities = 88/100 (88%), Gaps = 3/100 (3%)
 Strand = Plus / Minus

                                                                           
Query: 279     tccagaccaactgttagaaatgatattatttgacttctccagtagaactagcccaatgct 338
               |||||||||||||||||| ||||||||||||| ||||||| |||||| |||||||||| |
Sbjct: 8861569 tccagaccaactgttagatatgatattatttggcttctccggtagaattagcccaatgtt 8861510

                                                       
Query: 339     gcctcttcaagcctagcgcctgcatgttggtgtcttgatg 378
               |   ||||||||||| |||||||| |||| ||||| ||||
Sbjct: 8861509 g---cttcaagcctaacgcctgcacgttgatgtctagatg 8861473



 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 56/60 (93%)
 Strand = Plus / Minus

                                                                           
Query: 168     gtcaattgcaaacttcagccttccataatcaatatatctacagctacaagatagtttcac 227
               ||||||||  ||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct: 8861682 gtcaattggcaacttcatccttccataatcaatatatctacatctacaagatagtttcac 8861623



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 42/45 (93%), Gaps = 1/45 (2%)
 Strand = Plus / Minus

                                                            
Query: 72      aagtgatacatgtgctttttaaatagtggaactcccaaacagaaa 116
               ||||||||||||||||||| |||||||| |||| |||||||||||
Sbjct: 8861771 aagtgatacatgtgctttt-aaatagtgaaactaccaaacagaaa 8861728



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 29/31 (93%), Gaps = 2/31 (6%)
 Strand = Plus / Minus

                                              
Query: 7       aactcatccaatattttgcttacaagcaaca 37
               ||||||||||||  |||||||||||||||||
Sbjct: 8861841 aactcatccaat--tttgcttacaagcaaca 8861813



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>gb|AC139168.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJA1364E02,
             complete sequence
          Length = 126027

 Score = 99.6 bits (50), Expect = 7e-18
 Identities = 88/100 (88%), Gaps = 3/100 (3%)
 Strand = Plus / Minus

                                                                         
Query: 279   tccagaccaactgttagaaatgatattatttgacttctccagtagaactagcccaatgct 338
             |||||||||||||||||| ||||||||||||| ||||||| |||||| |||||||||| |
Sbjct: 52457 tccagaccaactgttagatatgatattatttggcttctccggtagaattagcccaatgtt 52398

                                                     
Query: 339   gcctcttcaagcctagcgcctgcatgttggtgtcttgatg 378
             |   ||||||||||| |||||||| |||| ||||| ||||
Sbjct: 52397 g---cttcaagcctaacgcctgcacgttgatgtctagatg 52361



 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 56/60 (93%)
 Strand = Plus / Minus

                                                                         
Query: 168   gtcaattgcaaacttcagccttccataatcaatatatctacagctacaagatagtttcac 227
             ||||||||  ||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct: 52570 gtcaattggcaacttcatccttccataatcaatatatctacatctacaagatagtttcac 52511



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 42/45 (93%), Gaps = 1/45 (2%)
 Strand = Plus / Minus

                                                          
Query: 72    aagtgatacatgtgctttttaaatagtggaactcccaaacagaaa 116
             ||||||||||||||||||| |||||||| |||| |||||||||||
Sbjct: 52659 aagtgatacatgtgctttt-aaatagtgaaactaccaaacagaaa 52616



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 29/31 (93%), Gaps = 2/31 (6%)
 Strand = Plus / Minus

                                            
Query: 7     aactcatccaatattttgcttacaagcaaca 37
             ||||||||||||  |||||||||||||||||
Sbjct: 52729 aactcatccaat--tttgcttacaagcaaca 52701



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>gb|AC135208.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1364E02,
              complete sequence
          Length = 112265

 Score = 99.6 bits (50), Expect = 7e-18
 Identities = 88/100 (88%), Gaps = 3/100 (3%)
 Strand = Plus / Minus

                                                                          
Query: 279    tccagaccaactgttagaaatgatattatttgacttctccagtagaactagcccaatgct 338
              |||||||||||||||||| ||||||||||||| ||||||| |||||| |||||||||| |
Sbjct: 104722 tccagaccaactgttagatatgatattatttggcttctccggtagaattagcccaatgtt 104663

                                                      
Query: 339    gcctcttcaagcctagcgcctgcatgttggtgtcttgatg 378
              |   ||||||||||| |||||||| |||| ||||| ||||
Sbjct: 104662 g---cttcaagcctaacgcctgcacgttgatgtctagatg 104626



 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 56/60 (93%)
 Strand = Plus / Minus

                                                                          
Query: 168    gtcaattgcaaacttcagccttccataatcaatatatctacagctacaagatagtttcac 227
              ||||||||  ||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct: 104835 gtcaattggcaacttcatccttccataatcaatatatctacatctacaagatagtttcac 104776



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 42/45 (93%), Gaps = 1/45 (2%)
 Strand = Plus / Minus

                                                           
Query: 72     aagtgatacatgtgctttttaaatagtggaactcccaaacagaaa 116
              ||||||||||||||||||| |||||||| |||| |||||||||||
Sbjct: 104924 aagtgatacatgtgctttt-aaatagtgaaactaccaaacagaaa 104881



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 29/31 (93%), Gaps = 2/31 (6%)
 Strand = Plus / Minus

                                             
Query: 7      aactcatccaatattttgcttacaagcaaca 37
              ||||||||||||  |||||||||||||||||
Sbjct: 104994 aactcatccaat--tttgcttacaagcaaca 104966



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 99.6 bits (50), Expect = 7e-18
 Identities = 88/100 (88%), Gaps = 3/100 (3%)
 Strand = Plus / Minus

                                                                           
Query: 279     tccagaccaactgttagaaatgatattatttgacttctccagtagaactagcccaatgct 338
               |||||||||||||||||| ||||||||||||| ||||||| |||||| |||||||||| |
Sbjct: 8859404 tccagaccaactgttagatatgatattatttggcttctccggtagaattagcccaatgtt 8859345

                                                       
Query: 339     gcctcttcaagcctagcgcctgcatgttggtgtcttgatg 378
               |   ||||||||||| |||||||| |||| ||||| ||||
Sbjct: 8859344 g---cttcaagcctaacgcctgcacgttgatgtctagatg 8859308



 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 56/60 (93%)
 Strand = Plus / Minus

                                                                           
Query: 168     gtcaattgcaaacttcagccttccataatcaatatatctacagctacaagatagtttcac 227
               ||||||||  ||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct: 8859517 gtcaattggcaacttcatccttccataatcaatatatctacatctacaagatagtttcac 8859458



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 42/45 (93%), Gaps = 1/45 (2%)
 Strand = Plus / Minus

                                                            
Query: 72      aagtgatacatgtgctttttaaatagtggaactcccaaacagaaa 116
               ||||||||||||||||||| |||||||| |||| |||||||||||
Sbjct: 8859606 aagtgatacatgtgctttt-aaatagtgaaactaccaaacagaaa 8859563



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 29/31 (93%), Gaps = 2/31 (6%)
 Strand = Plus / Minus

                                              
Query: 7       aactcatccaatattttgcttacaagcaaca 37
               ||||||||||||  |||||||||||||||||
Sbjct: 8859676 aactcatccaat--tttgcttacaagcaaca 8859648



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>dbj|AK073140.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033022I01, full
            insert sequence
          Length = 1621

 Score = 99.6 bits (50), Expect = 7e-18
 Identities = 88/100 (88%), Gaps = 3/100 (3%)
 Strand = Plus / Minus

                                                                        
Query: 279  tccagaccaactgttagaaatgatattatttgacttctccagtagaactagcccaatgct 338
            |||||||||||||||||| ||||||||||||| ||||||| |||||| |||||||||| |
Sbjct: 1245 tccagaccaactgttagatatgatattatttggcttctccggtagaattagcccaatgtt 1186

                                                    
Query: 339  gcctcttcaagcctagcgcctgcatgttggtgtcttgatg 378
            |   ||||||||||| |||||||| |||| ||||| ||||
Sbjct: 1185 g---cttcaagcctaacgcctgcacgttgatgtctagatg 1149



 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 56/60 (93%)
 Strand = Plus / Minus

                                                                        
Query: 168  gtcaattgcaaacttcagccttccataatcaatatatctacagctacaagatagtttcac 227
            ||||||||  ||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1358 gtcaattggcaacttcatccttccataatcaatatatctacatctacaagatagtttcac 1299



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 42/45 (93%), Gaps = 1/45 (2%)
 Strand = Plus / Minus

                                                         
Query: 72   aagtgatacatgtgctttttaaatagtggaactcccaaacagaaa 116
            ||||||||||||||||||| |||||||| |||| |||||||||||
Sbjct: 1447 aagtgatacatgtgctttt-aaatagtgaaactaccaaacagaaa 1404



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 29/31 (93%), Gaps = 2/31 (6%)
 Strand = Plus / Minus

                                           
Query: 7    aactcatccaatattttgcttacaagcaaca 37
            ||||||||||||  |||||||||||||||||
Sbjct: 1517 aactcatccaat--tttgcttacaagcaaca 1489



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>dbj|AK063856.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-122-D05, full
           insert sequence
          Length = 1022

 Score = 99.6 bits (50), Expect = 7e-18
 Identities = 88/100 (88%), Gaps = 3/100 (3%)
 Strand = Plus / Minus

                                                                       
Query: 279 tccagaccaactgttagaaatgatattatttgacttctccagtagaactagcccaatgct 338
           |||||||||||||||||| ||||||||||||| ||||||| |||||| |||||||||| |
Sbjct: 537 tccagaccaactgttagatatgatattatttggcttctccggtagaattagcccaatgtt 478

                                                   
Query: 339 gcctcttcaagcctagcgcctgcatgttggtgtcttgatg 378
           |   ||||||||||| |||||||| |||| ||||| ||||
Sbjct: 477 g---cttcaagcctaacgcctgcacgttgatgtctagatg 441



 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 56/60 (93%)
 Strand = Plus / Minus

                                                                       
Query: 168 gtcaattgcaaacttcagccttccataatcaatatatctacagctacaagatagtttcac 227
           ||||||||  ||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct: 650 gtcaattggcaacttcatccttccataatcaatatatctacatctacaagatagtttcac 591



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 42/45 (93%), Gaps = 1/45 (2%)
 Strand = Plus / Minus

                                                        
Query: 72  aagtgatacatgtgctttttaaatagtggaactcccaaacagaaa 116
           ||||||||||||||||||| |||||||| |||| |||||||||||
Sbjct: 739 aagtgatacatgtgctttt-aaatagtgaaactaccaaacagaaa 696



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 29/31 (93%), Gaps = 2/31 (6%)
 Strand = Plus / Minus

                                          
Query: 7   aactcatccaatattttgcttacaagcaaca 37
           ||||||||||||  |||||||||||||||||
Sbjct: 809 aactcatccaat--tttgcttacaagcaaca 781



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>dbj|AK058806.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-003-C02, full
           insert sequence
          Length = 537

 Score = 99.6 bits (50), Expect = 7e-18
 Identities = 88/100 (88%), Gaps = 3/100 (3%)
 Strand = Plus / Minus

                                                                       
Query: 279 tccagaccaactgttagaaatgatattatttgacttctccagtagaactagcccaatgct 338
           |||||||||||||||||| ||||||||||||| ||||||| |||||| |||||||||| |
Sbjct: 200 tccagaccaactgttagatatgatattatttggcttctccggtagaattagcccaatgtt 141

                                                   
Query: 339 gcctcttcaagcctagcgcctgcatgttggtgtcttgatg 378
           |   ||||||||||| |||||||| |||| ||||| ||||
Sbjct: 140 g---cttcaagcctaacgcctgcacgttgatgtctagatg 104



 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 56/60 (93%)
 Strand = Plus / Minus

                                                                       
Query: 168 gtcaattgcaaacttcagccttccataatcaatatatctacagctacaagatagtttcac 227
           ||||||||  ||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct: 313 gtcaattggcaacttcatccttccataatcaatatatctacatctacaagatagtttcac 254



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 42/45 (93%), Gaps = 1/45 (2%)
 Strand = Plus / Minus

                                                        
Query: 72  aagtgatacatgtgctttttaaatagtggaactcccaaacagaaa 116
           ||||||||||||||||||| |||||||| |||| |||||||||||
Sbjct: 402 aagtgatacatgtgctttt-aaatagtgaaactaccaaacagaaa 359



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 29/31 (93%), Gaps = 2/31 (6%)
 Strand = Plus / Minus

                                          
Query: 7   aactcatccaatattttgcttacaagcaaca 37
           ||||||||||||  |||||||||||||||||
Sbjct: 472 aactcatccaat--tttgcttacaagcaaca 444



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>gb|BT019079.1| Zea mays clone Contig661.F mRNA sequence
          Length = 1229

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 37/38 (97%)
 Strand = Plus / Minus

                                                 
Query: 178 aacttcagccttccataatcaatatatctacagctaca 215
           ||||||| ||||||||||||||||||||||||||||||
Sbjct: 828 aacttcatccttccataatcaatatatctacagctaca 791



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>gb|BT016437.1| Zea mays clone Contig270 mRNA sequence
          Length = 1011

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 37/38 (97%)
 Strand = Plus / Plus

                                                 
Query: 178 aacttcagccttccataatcaatatatctacagctaca 215
           ||||||| ||||||||||||||||||||||||||||||
Sbjct: 413 aacttcatccttccataatcaatatatctacagctaca 450



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>gb|AY109296.1| Zea mays PCO117045 mRNA sequence
          Length = 1884

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 37/38 (97%)
 Strand = Plus / Minus

                                                  
Query: 178  aacttcagccttccataatcaatatatctacagctaca 215
            ||||||| ||||||||||||||||||||||||||||||
Sbjct: 1349 aacttcatccttccataatcaatatatctacagctaca 1312



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>gb|BT024094.1| Zea mays clone EL01N0530G01 mRNA sequence
          Length = 1888

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                  
Query: 178  aacttcagccttccataatcaatatatctacagctaca 215
            ||||||| ||||||| ||||| ||||||||||||||||
Sbjct: 1485 aacttcatccttccacaatcactatatctacagctaca 1448



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>emb|CR380950.1| Candida glabrata strain CBS138 chromosome D complete sequence
          Length = 651701

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 296   aaatgatattatttgacttctccag 320
             ||||||||||||||| |||||||||
Sbjct: 93157 aaatgatattatttggcttctccag 93181



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>emb|AL731688.14| Mouse DNA sequence from clone RP23-291K6 on chromosome 11 Contains the
             3' end of the Slit3 gene for slit homolog 3 (Drosophila),
             complete sequence
          Length = 113164

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 46    ggcttggcttttgttcttacc 66
             |||||||||||||||||||||
Sbjct: 50365 ggcttggcttttgttcttacc 50385



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>gb|AC010061.6| Drosophila melanogaster 3L BAC RP98-11F16 (Roswell Park Cancer
             Institute Drosophila BAC Library) complete sequence
          Length = 165318

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 296   aaatgatattatttgacttct 316
             |||||||||||||||||||||
Sbjct: 78399 aaatgatattatttgacttct 78379



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>gb|AE003531.3| Drosophila melanogaster chromosome 3L, section 54 of 83 of the complete
              sequence
          Length = 271869

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 296    aaatgatattatttgacttct 316
              |||||||||||||||||||||
Sbjct: 186850 aaatgatattatttgacttct 186830



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>gb|AE017198.1| Lactobacillus johnsonii NCC 533, complete genome
          Length = 1992676

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 84     tgctttttaaatagtggaact 104
              |||||||||||||||||||||
Sbjct: 873020 tgctttttaaatagtggaact 873000



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>gb|AY726585.1| Homo sapiens clone MO-01 mRNA sequence
          Length = 1028

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 68  cagtaagtgatacatgtgct 87
           ||||||||||||||||||||
Sbjct: 150 cagtaagtgatacatgtgct 169



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>gb|AC123665.9| Mus musculus chromosome 14, clone RP23-226A4, complete sequence
          Length = 241576

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 31     agcaacacaaacacaggctt 50
              ||||||||||||||||||||
Sbjct: 190133 agcaacacaaacacaggctt 190152



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>gb|BC049155.1| Mus musculus F-box only protein 34, mRNA (cDNA clone
           IMAGE:6313296), with apparent retained intron
          Length = 3036

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 31  agcaacacaaacacaggctt 50
           ||||||||||||||||||||
Sbjct: 164 agcaacacaaacacaggctt 183



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>gb|AC124502.4| Mus musculus BAC clone RP23-414G6 from chromosome 19, complete sequence
          Length = 219212

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 68    cagtaagtgatacatgtgct 87
             ||||||||||||||||||||
Sbjct: 28855 cagtaagtgatacatgtgct 28874



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>gb|AC125539.4| Mus musculus BAC clone RP23-150M18 from 15, complete sequence
          Length = 204453

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 297    aatgatattatttgacttct 316
              ||||||||||||||||||||
Sbjct: 161128 aatgatattatttgacttct 161109



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>gb|BC048149.1| Mus musculus F-box only protein 34, mRNA (cDNA clone MGC:61410
           IMAGE:5706344), complete cds
          Length = 3177

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 31  agcaacacaaacacaggctt 50
           ||||||||||||||||||||
Sbjct: 333 agcaacacaaacacaggctt 352



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>emb|AL136958.9| Human DNA sequence from clone RP11-147L20 on chromosome 13q14.11-14.2
             Contains the ESD gene for esterase D/formylglutathione
             hydrolase, the 3' end of the HTR2A gene for
             5-hydroxytryptamine (serotonin) receptor 2A, the 3' end of
             a variant of gene KIAA1016 and a CpG island, complete
             sequence
          Length = 106317

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 50    tggcttttgttcttacccca 69
             ||||||||||||||||||||
Sbjct: 74912 tggcttttgttcttacccca 74893



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>gb|AC136297.6| Homo sapiens chromosome 11, clone CTD-2245O6, complete sequence
          Length = 185908

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 35    acacaaacacaggcttggct 54
             ||||||||||||||||||||
Sbjct: 23937 acacaaacacaggcttggct 23956



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>emb|AL928645.6| Mouse DNA sequence from clone RP23-452N23 on chromosome 4 Contains part
             of the Ptprd gene for receptor type protein tyrosine
             phosphatase D, complete sequence
          Length = 172513

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 79    acatgtgctttttaaatagtggaa 102
             |||||||||||||||||| |||||
Sbjct: 17996 acatgtgctttttaaatactggaa 17973



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>emb|CR354424.7| Zebrafish DNA sequence from clone CH211-125L9 in linkage group 24,
             complete sequence
          Length = 156999

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 307   tttgacttctccagtagaac 326
             ||||||||||||||||||||
Sbjct: 43766 tttgacttctccagtagaac 43747



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>dbj|AK171630.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched
           library, clone:F830001G13 product:F-box only protein 34,
           full insert sequence
          Length = 3419

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 31  agcaacacaaacacaggctt 50
           ||||||||||||||||||||
Sbjct: 647 agcaacacaaacacaggctt 666



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>dbj|AK013711.1| Mus musculus adult male hippocampus cDNA, RIKEN full-length
           enriched library, clone:2900057B08 product:hypothetical
           protein, full insert sequence
          Length = 1154

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 31  agcaacacaaacacaggctt 50
           ||||||||||||||||||||
Sbjct: 661 agcaacacaaacacaggctt 680



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>dbj|AK045953.1| Mus musculus adult male corpora quadrigemina cDNA, RIKEN full-length
            enriched library, clone:B230326M20 product:KIAA1350
            PROTEIN (FRAGMENT) homolog [Homo sapiens], full insert
            sequence
          Length = 1984

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 75   tgatacatgtgctttttaaa 94
            ||||||||||||||||||||
Sbjct: 1891 tgatacatgtgctttttaaa 1910



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>dbj|AK030317.1| Mus musculus 11 days pregnant adult female ovary and uterus cDNA,
            RIKEN full-length enriched library, clone:5031428M13
            product:hypothetical protein, full insert sequence
          Length = 3441

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 75   tgatacatgtgctttttaaa 94
            ||||||||||||||||||||
Sbjct: 1912 tgatacatgtgctttttaaa 1931



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>gb|AC091196.6| Homo sapiens chromosome 11, clone RP11-371C18, complete sequence
          Length = 132211

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 35    acacaaacacaggcttggct 54
             ||||||||||||||||||||
Sbjct: 37435 acacaaacacaggcttggct 37416



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>gb|AC121540.14| Mus musculus chromosome 3, clone RP23-48L9, complete sequence
          Length = 224634

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 75     tgatacatgtgctttttaaa 94
              ||||||||||||||||||||
Sbjct: 206925 tgatacatgtgctttttaaa 206944



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>dbj|BA000003.2| Buchnera aphidicola str. APS (Acyrthosiphon pisum) genomic DNA, complete
              sequence
          Length = 640681

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 1      aaatagaactcatccaatattttgctta 28
              |||||||||||||||||| |||| ||||
Sbjct: 387426 aaatagaactcatccaatttttttctta 387453



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>gb|AC119177.11| Mus musculus chromosome 15, clone RP24-559L16, complete sequence
          Length = 246547

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 297   aatgatattatttgacttct 316
             ||||||||||||||||||||
Sbjct: 42970 aatgatattatttgacttct 42951



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>dbj|AP001107.5| Homo sapiens genomic DNA, chromosome 11q clone:RP11-867G23, complete
             sequences
          Length = 196662

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 68    cagtaagtgatacatgtgct 87
             ||||||||||||||||||||
Sbjct: 22582 cagtaagtgatacatgtgct 22601



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>emb|CT573040.5| Wallaby DNA sequence from clone MEKBa-454A14, complete sequence
          Length = 164317

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 334   atgctgcctcttcaagccta 353
             ||||||||||||||||||||
Sbjct: 87779 atgctgcctcttcaagccta 87760



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>gb|AC155158.15| Mus musculus chromosome 3, clone RP24-70L3, complete sequence
          Length = 240767

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 75    tgatacatgtgctttttaaa 94
             ||||||||||||||||||||
Sbjct: 12939 tgatacatgtgctttttaaa 12958



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>gb|AC164977.2| Mus musculus BAC clone RP23-446B6 from chromosome 14, complete sequence
          Length = 179146

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 31     agcaacacaaacacaggctt 50
              ||||||||||||||||||||
Sbjct: 122102 agcaacacaaacacaggctt 122083


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,053,434
Number of Sequences: 3902068
Number of extensions: 4053434
Number of successful extensions: 71544
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 71381
Number of HSP's gapped (non-prelim): 149
length of query: 396
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 374
effective length of database: 17,147,199,772
effective search space: 6413052714728
effective search space used: 6413052714728
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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