ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet119b12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CET1_DEBHA (Q6BND2) mRNA capping enzyme beta subunit (EC 3.1.3.3... 28 6.6
2PKND_CHLPN (Q9Z986) Serine/threonine-protein kinase pknD (EC 2.7... 28 8.6

>CET1_DEBHA (Q6BND2) mRNA capping enzyme beta subunit (EC 3.1.3.33)|
           (Polynucleotide 5'-triphosphatase) (mRNA
           5'-triphosphatase) (TPase)
          Length = 476

 Score = 28.5 bits (62), Expect = 6.6
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 8   NLLNIPCPSPHHITNSTYQAWKKQAHYNYR 97
           NLLN P P+    T  T + W +  H N+R
Sbjct: 40  NLLNDPAPNNELKTKETKKDWSEDEHSNFR 69



to top

>PKND_CHLPN (Q9Z986) Serine/threonine-protein kinase pknD (EC 2.7.11.1)|
          Length = 932

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = +3

Query: 81  LTTITEQQSSLRLLHDIGSYKLHGH*LAS*SGRTSVLVRDQKPI 212
           L  + +   SL L  D  ++ +H + L S SGR +++VRD + I
Sbjct: 418 LIALEQHNHSLSLFVDGTTWLIHMNYLPSRSGRVAIIVRDMEDI 461


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,996,794
Number of Sequences: 219361
Number of extensions: 833731
Number of successful extensions: 2880
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2869
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2228238148
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top