ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet119b10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LPP1_ARATH (Q9ZU49) Lipid phosphate phosphatase 1 (EC 3.1.3.-) (... 49 7e-06
2LPP2_ARATH (Q9XI60) Lipid phosphate phosphatase 2 (EC 3.1.3.-) (... 48 1e-05
3LPP3_ARATH (Q8LFD1) Putative lipid phosphate phosphatase 3, chlo... 46 6e-05
4CHS2_NEUCR (P30589) Chitin synthase 2 (EC 2.4.1.16) (Chitin-UDP ... 30 3.2
5TAH18_USTMA (Q4P3D8) Probable NADPH reductase TAH18 (EC 1.-.-.-) 30 4.2
6SYFB_HAEIN (P43820) Phenylalanyl-tRNA synthetase beta chain (EC ... 30 4.2
7SYFB_HAEI8 (Q4QKM3) Phenylalanyl-tRNA synthetase beta chain (EC ... 30 4.2
8RASA2_MOUSE (P58069) Ras GTPase-activating protein 2 (GAP1m) 29 5.5
9RASA2_RAT (Q63713) Ras GTPase-activating protein 2 (GAP1m) 29 5.5
10PSBA_PALPL (O98733) Photosystem Q(B) protein (32 kDa thylakoid m... 29 5.5
11PSBA_ANTSP (P24625) Photosystem Q(B) protein (32 kDa thylakoid m... 29 5.5
12BSN_RAT (O88778) Bassoon protein 28 9.4
13ATS16_HUMAN (Q8TE57) ADAMTS-16 precursor (EC 3.4.24.-) (A disint... 28 9.4
14POXM_DROME (P23757) Paired box pox-meso protein (Paired box meso... 28 9.4
15DLL1_XENLA (P53773) Homeobox protein DLL-1 (DLL) (XDLL) 28 9.4

>LPP1_ARATH (Q9ZU49) Lipid phosphate phosphatase 1 (EC 3.1.3.-) (AtLPP1)|
           (Phosphatidic acid phosphatase 1) (AtPAP1) (Prenyl
           diphosphate phosphatase)
          Length = 327

 Score = 48.9 bits (115), Expect = 7e-06
 Identities = 26/84 (30%), Positives = 47/84 (55%)
 Frame = -2

Query: 475 VFAGGILGLVVASFCYLRFFPHPASKKGLWPHAFHLHNLNPETENQVTTDTHQSGLPHDL 296
           VFAG ++G +VA+FCY +F+P+P  ++G  P+A+         E  V   + Q+G     
Sbjct: 250 VFAGALIGTLVAAFCYRQFYPNPYHEEGWGPYAY----FKAAQERGVPVTSSQNG----- 300

Query: 295 SMVPYVPSMEMRTNGRALDNMEAG 224
                + +M ++ +  +L+NME+G
Sbjct: 301 ---DALRAMSLQMDSTSLENMESG 321



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>LPP2_ARATH (Q9XI60) Lipid phosphate phosphatase 2 (EC 3.1.3.-) (AtLPP2)|
           (Phosphatidic acid phosphatase 2) (AtPAP2) (Prenyl
           diphosphate phosphatase)
          Length = 290

 Score = 47.8 bits (112), Expect = 1e-05
 Identities = 20/34 (58%), Positives = 24/34 (70%)
 Frame = -2

Query: 475 VFAGGILGLVVASFCYLRFFPHPASKKGLWPHAF 374
           VF G I+GL VA+FCYL+FFP P    G  PHA+
Sbjct: 226 VFGGAIIGLTVATFCYLQFFPPPYDPDGWGPHAY 259



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>LPP3_ARATH (Q8LFD1) Putative lipid phosphate phosphatase 3, chloroplast|
           precursor (EC 3.1.3.-) (AtLPP3) (Phosphatidic acid
           phosphatase 3) (Phosphatidate phosphohydrolase 3)
          Length = 364

 Score = 45.8 bits (107), Expect = 6e-05
 Identities = 18/34 (52%), Positives = 26/34 (76%)
 Frame = -2

Query: 475 VFAGGILGLVVASFCYLRFFPHPASKKGLWPHAF 374
           VFAGG+LGL +++ CYL+FFP P   +G  P+A+
Sbjct: 275 VFAGGLLGLAISTICYLQFFPPPYHTEGWGPYAY 308



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>CHS2_NEUCR (P30589) Chitin synthase 2 (EC 2.4.1.16) (Chitin-UDP|
           acetyl-glucosaminyl transferase 2)
          Length = 944

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +2

Query: 41  GLDQLQSNATNKIAQVYLSLQETYTEQDFY*YLPTYKVVSLMV 169
           G D+   N  +++     SL E   +QD+Y  + TY VVS MV
Sbjct: 805 GYDECLRNLRDRVMVPCRSLSEDQLQQDYYKSVRTYMVVSWMV 847



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>TAH18_USTMA (Q4P3D8) Probable NADPH reductase TAH18 (EC 1.-.-.-)|
          Length = 616

 Score = 29.6 bits (65), Expect = 4.2
 Identities = 21/65 (32%), Positives = 32/65 (49%)
 Frame = +3

Query: 72  IKLRKFIYLYKKHIQNKTSTSTYLPTRWCLSWCMPTSIPMVVLFSYQTLPPPASMLSNAR 251
           I+L   +  YK  ++      T L TRW  S  + + +P+V+   Y TLPP  +      
Sbjct: 413 IQLSVAMVKYKTRLRK---ARTGLCTRWLSSLPLGSRVPVVIKPGYLTLPPAQA------ 463

Query: 252 PLVLI 266
           PL+LI
Sbjct: 464 PLILI 468



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>SYFB_HAEIN (P43820) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)|
           (Phenylalanine--tRNA ligase beta chain) (PheRS)
          Length = 795

 Score = 29.6 bits (65), Expect = 4.2
 Identities = 19/59 (32%), Positives = 31/59 (52%)
 Frame = +2

Query: 143 TYKVVSLMVHAYLHPHGGLIQLPNSAAAGLHVIQRSAIGSHLHGGNIWNHGQVVRQSRL 319
           TY  V   + + LHPH   + LPN  +  +  ++ S I S L G  ++N  +  +QSR+
Sbjct: 512 TYSFVDPKIQSLLHPHQEALVLPNPISVEMSAMRVSLI-SGLLGAVLYNQNR--QQSRV 567



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>SYFB_HAEI8 (Q4QKM3) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)|
           (Phenylalanine--tRNA ligase beta chain) (PheRS)
          Length = 795

 Score = 29.6 bits (65), Expect = 4.2
 Identities = 19/59 (32%), Positives = 31/59 (52%)
 Frame = +2

Query: 143 TYKVVSLMVHAYLHPHGGLIQLPNSAAAGLHVIQRSAIGSHLHGGNIWNHGQVVRQSRL 319
           TY  V   + + LHPH   + LPN  +  +  ++ S I S L G  ++N  +  +QSR+
Sbjct: 512 TYSFVDPKIQSLLHPHKEALVLPNPISVEMSAMRVSLI-SGLLGAVLYNQNR--QQSRV 567



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>RASA2_MOUSE (P58069) Ras GTPase-activating protein 2 (GAP1m)|
          Length = 848

 Score = 29.3 bits (64), Expect = 5.5
 Identities = 16/34 (47%), Positives = 20/34 (58%)
 Frame = -2

Query: 445 VASFCYLRFFPHPASKKGLWPHAFHLHNLNPETE 344
           V+SF +LRFF        L PHAFHL    P+T+
Sbjct: 504 VSSFVFLRFFAVAI----LSPHAFHLRPHYPDTQ 533



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>RASA2_RAT (Q63713) Ras GTPase-activating protein 2 (GAP1m)|
          Length = 847

 Score = 29.3 bits (64), Expect = 5.5
 Identities = 16/34 (47%), Positives = 20/34 (58%)
 Frame = -2

Query: 445 VASFCYLRFFPHPASKKGLWPHAFHLHNLNPETE 344
           V+SF +LRFF        L PHAFHL    P+T+
Sbjct: 503 VSSFVFLRFFAVAI----LSPHAFHLRPHYPDTQ 532



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>PSBA_PALPL (O98733) Photosystem Q(B) protein (32 kDa thylakoid membrane|
           protein) (Photosystem II protein D1)
          Length = 360

 Score = 29.3 bits (64), Expect = 5.5
 Identities = 14/48 (29%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
 Frame = +2

Query: 206 LPNSAAAGLH---VIQRSAIGSHLHGGNIWNHGQVVRQSRLMGICCYL 340
           +P+SAA G+H   + + +++   L+ G  +   Q++    L+G+CCY+
Sbjct: 83  IPSSAAIGIHFYPIWEAASLDEWLYNGGPY---QLIVLHFLLGVCCYI 127



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>PSBA_ANTSP (P24625) Photosystem Q(B) protein (32 kDa thylakoid membrane|
           protein) (Photosystem II protein D1)
          Length = 360

 Score = 29.3 bits (64), Expect = 5.5
 Identities = 14/48 (29%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
 Frame = +2

Query: 206 LPNSAAAGLH---VIQRSAIGSHLHGGNIWNHGQVVRQSRLMGICCYL 340
           +P+SAA G+H   + + +++   L+ G  +   Q++    L+G+CCY+
Sbjct: 83  IPSSAAIGIHFYPIWEAASLDEWLYNGGPY---QLIVLHFLLGVCCYI 127



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>BSN_RAT (O88778) Bassoon protein|
          Length = 3937

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -1

Query: 266  DENQWPSVG*HGGRRRQSLVTE*DHHGDGGRHA 168
            +E  WP     GG  R +   E  HHGD GRH+
Sbjct: 3618 EEGLWPHD--EGGPGRHTSAKEHRHHGDHGRHS 3648



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>ATS16_HUMAN (Q8TE57) ADAMTS-16 precursor (EC 3.4.24.-) (A disintegrin and|
            metalloproteinase with thrombospondin motifs 16) (ADAM-TS
            16) (ADAM-TS16)
          Length = 1224

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
 Frame = +1

Query: 217  CRRRPP---CYPTLGHWFSSPWREHMEPWTGRAAVQTDGYLLLLGSQ 348
            C R PP     P+ G WF+SPW +      G   VQT     L G +
Sbjct: 1114 CPRHPPFAAAGPSRGSWFASPWSQCTASCGG--GVQTRSVQCLAGGR 1158



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>POXM_DROME (P23757) Paired box pox-meso protein (Paired box mesodermal|
           protein)
          Length = 402

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
 Frame = -2

Query: 313 GLPHDLSMVPYVPSMEMRT-NGRALDNMEAGGGRVW*LNKTTMGMEVGMHHERHH 152
           G+   +S +P  PS    T  G+ L + E G G+    N        GMHH  HH
Sbjct: 337 GMGSTVSPLPMTPSPVAGTAGGQPLLDCEGGAGQQSPYNYYMYFQNGGMHHHHHH 391



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>DLL1_XENLA (P53773) Homeobox protein DLL-1 (DLL) (XDLL)|
          Length = 250

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +1

Query: 187 PWWSYSVTKLCRRRPPCY-PTLGHWFSSPWREHME 288
           P W  S +K     P  Y P   HW+SSP ++ M+
Sbjct: 211 PVWDVSASKGVSMAPNSYMPGYSHWYSSPHQDTMQ 245


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,496,380
Number of Sequences: 219361
Number of extensions: 1778539
Number of successful extensions: 5138
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 5008
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5138
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3188886965
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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