ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet119b10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_475851.1| Oryza sativa (japonica cultivar-group), predic... 46 0.10
2gb|AC135925.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.6
3ref|XM_385575.1| Gibberella zeae PH-1 chromosome 3 hypothetical ... 42 1.6
4gb|AC130725.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.6
5gb|AC136492.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.6
6dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
7gb|AC159103.1| Mus musculus BAC clone RP23-424O13 from chromosom... 42 1.6
8emb|X89248.1|GGRNAAMH G.gallus mRNA for anti-mullerian hormone 42 1.6
9gb|AC005736.1| Homo sapiens chromosome 16, BAC clone 462G18 (LAN... 40 6.4
10gb|DQ375529.1| Salmo salar main olfactory receptor-like protein ... 40 6.4
11emb|CR378664.1| Photobacterium profundum SS9; segment 2/12 40 6.4
12emb|BX284762.1|NCB13B3 Neurospora crassa DNA linkage group II BA... 40 6.4
13gb|AC011384.4| Homo sapiens chromosome 5 clone CTB-143D11, compl... 40 6.4
14gb|AC008634.5| Homo sapiens chromosome 5 clone CTB-174K14, compl... 40 6.4
15gb|AC007151.2|AC007151 Homo sapiens clone RPCI-11_95J11, complet... 40 6.4
16gb|AC108826.9| Mus musculus chromosome 16, clone RP23-109P11, co... 40 6.4

>ref|XM_475851.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1110

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 47/55 (85%)
 Strand = Plus / Minus

                                                                  
Query: 414 gggaagaaccgcaggtagcagaacgaagcaacaaccagcccgaggattccaccgg 468
           ||||||||| | ||||||||||| |||||||| ||||  || || ||||||||||
Sbjct: 746 gggaagaactgaaggtagcagaaggaagcaaccaccaatccaagaattccaccgg 692



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>gb|AC135925.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0560C03,
             complete sequence
          Length = 177861

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                  
Query: 414   gggaagaaccgcaggtagcagaacgaagcaacaacca 450
             ||||||||| | ||||||||||| |||||||| ||||
Sbjct: 24051 gggaagaactgaaggtagcagaaggaagcaaccacca 24087



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>ref|XM_385575.1| Gibberella zeae PH-1 chromosome 3 hypothetical protein (FG05399.1)
           partial mRNA
          Length = 2415

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 205 gttaccaaactctgccgccgc 225
           |||||||||||||||||||||
Sbjct: 762 gttaccaaactctgccgccgc 782



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>gb|AC130725.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0494H05,
             complete sequence
          Length = 141715

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                  
Query: 414   gggaagaaccgcaggtagcagaacgaagcaacaacca 450
             ||||||||| | ||||||||||| |||||||| ||||
Sbjct: 99236 gggaagaactgaaggtagcagaaggaagcaaccacca 99272



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>gb|AC136492.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0554F08,
              complete sequence
          Length = 166218

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                   
Query: 414    gggaagaaccgcaggtagcagaacgaagcaacaacca 450
              ||||||||| | ||||||||||| |||||||| ||||
Sbjct: 123739 gggaagaactgaaggtagcagaaggaagcaaccacca 123775



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                     
Query: 414      gggaagaaccgcaggtagcagaacgaagcaacaacca 450
                ||||||||| | ||||||||||| |||||||| ||||
Sbjct: 27092655 gggaagaactgaaggtagcagaaggaagcaaccacca 27092691



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>gb|AC159103.1| Mus musculus BAC clone RP23-424O13 from chromosome 14, complete
             sequence
          Length = 195391

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 25    gcttctgaaaactcaaggact 45
             |||||||||||||||||||||
Sbjct: 53320 gcttctgaaaactcaaggact 53340



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>emb|X89248.1|GGRNAAMH G.gallus mRNA for anti-mullerian hormone
          Length = 4200

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 174  cctacctccatccccatggtg 194
            |||||||||||||||||||||
Sbjct: 1974 cctacctccatccccatggtg 1954



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>gb|AC005736.1| Homo sapiens chromosome 16, BAC clone 462G18 (LANL), complete sequence
          Length = 215441

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 134    tacctacctacctacaaggt 153
              ||||||||||||||||||||
Sbjct: 213848 tacctacctacctacaaggt 213829



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>gb|DQ375529.1| Salmo salar main olfactory receptor-like protein (SORB) mRNA,
           partial cds
          Length = 956

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 256 tggttctcatctccatggag 275
           ||||||||||||||||||||
Sbjct: 178 tggttctcatctccatggag 197



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>emb|CR378664.1| Photobacterium profundum SS9; segment 2/12
          Length = 347994

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 388   acaacccctttttgctagcc 407
             ||||||||||||||||||||
Sbjct: 54806 acaacccctttttgctagcc 54787



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>emb|BX284762.1|NCB13B3 Neurospora crassa DNA linkage group II BAC contig B13B3
          Length = 82584

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 127   ctactagtacctacctacct 146
             ||||||||||||||||||||
Sbjct: 34223 ctactagtacctacctacct 34242



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>gb|AC011384.4| Homo sapiens chromosome 5 clone CTB-143D11, complete sequence
          Length = 104475

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 177    acctccatccccatggtggt 196
              ||||||||||||||||||||
Sbjct: 100612 acctccatccccatggtggt 100593



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>gb|AC008634.5| Homo sapiens chromosome 5 clone CTB-174K14, complete sequence
          Length = 97811

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 177   acctccatccccatggtggt 196
             ||||||||||||||||||||
Sbjct: 81482 acctccatccccatggtggt 81501



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>gb|AC007151.2|AC007151 Homo sapiens clone RPCI-11_95J11, complete sequence
          Length = 165196

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 134    tacctacctacctacaaggt 153
              ||||||||||||||||||||
Sbjct: 117646 tacctacctacctacaaggt 117665



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>gb|AC108826.9| Mus musculus chromosome 16, clone RP23-109P11, complete sequence
          Length = 191894

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 17    aatggattgcttctgaaaac 36
             ||||||||||||||||||||
Sbjct: 84474 aatggattgcttctgaaaac 84493


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,987,454
Number of Sequences: 3902068
Number of extensions: 3987454
Number of successful extensions: 92689
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 92631
Number of HSP's gapped (non-prelim): 58
length of query: 476
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 454
effective length of database: 17,147,199,772
effective search space: 7784828696488
effective search space used: 7784828696488
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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