| Clone Name | rbaet119b10 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_475851.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1110 Score = 46.1 bits (23), Expect = 0.10 Identities = 47/55 (85%) Strand = Plus / Minus Query: 414 gggaagaaccgcaggtagcagaacgaagcaacaaccagcccgaggattccaccgg 468 ||||||||| | ||||||||||| |||||||| |||| || || |||||||||| Sbjct: 746 gggaagaactgaaggtagcagaaggaagcaaccaccaatccaagaattccaccgg 692
>gb|AC135925.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0560C03, complete sequence Length = 177861 Score = 42.1 bits (21), Expect = 1.6 Identities = 33/37 (89%) Strand = Plus / Plus Query: 414 gggaagaaccgcaggtagcagaacgaagcaacaacca 450 ||||||||| | ||||||||||| |||||||| |||| Sbjct: 24051 gggaagaactgaaggtagcagaaggaagcaaccacca 24087
>ref|XM_385575.1| Gibberella zeae PH-1 chromosome 3 hypothetical protein (FG05399.1) partial mRNA Length = 2415 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 205 gttaccaaactctgccgccgc 225 ||||||||||||||||||||| Sbjct: 762 gttaccaaactctgccgccgc 782
>gb|AC130725.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0494H05, complete sequence Length = 141715 Score = 42.1 bits (21), Expect = 1.6 Identities = 33/37 (89%) Strand = Plus / Plus Query: 414 gggaagaaccgcaggtagcagaacgaagcaacaacca 450 ||||||||| | ||||||||||| |||||||| |||| Sbjct: 99236 gggaagaactgaaggtagcagaaggaagcaaccacca 99272
>gb|AC136492.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0554F08, complete sequence Length = 166218 Score = 42.1 bits (21), Expect = 1.6 Identities = 33/37 (89%) Strand = Plus / Plus Query: 414 gggaagaaccgcaggtagcagaacgaagcaacaacca 450 ||||||||| | ||||||||||| |||||||| |||| Sbjct: 123739 gggaagaactgaaggtagcagaaggaagcaaccacca 123775
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 1.6 Identities = 33/37 (89%) Strand = Plus / Plus Query: 414 gggaagaaccgcaggtagcagaacgaagcaacaacca 450 ||||||||| | ||||||||||| |||||||| |||| Sbjct: 27092655 gggaagaactgaaggtagcagaaggaagcaaccacca 27092691
>gb|AC159103.1| Mus musculus BAC clone RP23-424O13 from chromosome 14, complete sequence Length = 195391 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 25 gcttctgaaaactcaaggact 45 ||||||||||||||||||||| Sbjct: 53320 gcttctgaaaactcaaggact 53340
>emb|X89248.1|GGRNAAMH G.gallus mRNA for anti-mullerian hormone Length = 4200 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 174 cctacctccatccccatggtg 194 ||||||||||||||||||||| Sbjct: 1974 cctacctccatccccatggtg 1954
>gb|AC005736.1| Homo sapiens chromosome 16, BAC clone 462G18 (LANL), complete sequence Length = 215441 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 134 tacctacctacctacaaggt 153 |||||||||||||||||||| Sbjct: 213848 tacctacctacctacaaggt 213829
>gb|DQ375529.1| Salmo salar main olfactory receptor-like protein (SORB) mRNA, partial cds Length = 956 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 256 tggttctcatctccatggag 275 |||||||||||||||||||| Sbjct: 178 tggttctcatctccatggag 197
>emb|CR378664.1| Photobacterium profundum SS9; segment 2/12 Length = 347994 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 388 acaacccctttttgctagcc 407 |||||||||||||||||||| Sbjct: 54806 acaacccctttttgctagcc 54787
>emb|BX284762.1|NCB13B3 Neurospora crassa DNA linkage group II BAC contig B13B3 Length = 82584 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 ctactagtacctacctacct 146 |||||||||||||||||||| Sbjct: 34223 ctactagtacctacctacct 34242
>gb|AC011384.4| Homo sapiens chromosome 5 clone CTB-143D11, complete sequence Length = 104475 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 177 acctccatccccatggtggt 196 |||||||||||||||||||| Sbjct: 100612 acctccatccccatggtggt 100593
>gb|AC008634.5| Homo sapiens chromosome 5 clone CTB-174K14, complete sequence Length = 97811 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 177 acctccatccccatggtggt 196 |||||||||||||||||||| Sbjct: 81482 acctccatccccatggtggt 81501
>gb|AC007151.2|AC007151 Homo sapiens clone RPCI-11_95J11, complete sequence Length = 165196 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 134 tacctacctacctacaaggt 153 |||||||||||||||||||| Sbjct: 117646 tacctacctacctacaaggt 117665
>gb|AC108826.9| Mus musculus chromosome 16, clone RP23-109P11, complete sequence Length = 191894 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 17 aatggattgcttctgaaaac 36 |||||||||||||||||||| Sbjct: 84474 aatggattgcttctgaaaac 84493 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,987,454 Number of Sequences: 3902068 Number of extensions: 3987454 Number of successful extensions: 92689 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 92631 Number of HSP's gapped (non-prelim): 58 length of query: 476 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 454 effective length of database: 17,147,199,772 effective search space: 7784828696488 effective search space used: 7784828696488 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)