ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet119a10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DLL3_MOUSE (O88516) Delta-like protein 3 precursor (Drosophila D... 30 3.4
2DNAK_CORGL (Q8NLY6) Chaperone protein dnaK (Heat shock protein 7... 29 5.8
3SRP_DROME (P52172) Box A-binding factor (ABF) (GATA-binding fact... 29 5.8
4STF_LAMBD (P03764) Side tail fiber protein 28 7.6
5TIE2_MOUSE (Q02858) Angiopoietin-1 receptor precursor (EC 2.7.10... 28 7.6

>DLL3_MOUSE (O88516) Delta-like protein 3 precursor (Drosophila Delta homolog|
           3) (M-Delta-3)
          Length = 592

 Score = 29.6 bits (65), Expect = 3.4
 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = -3

Query: 241 CRNNAVCAEVAGE-ECVPPQGLFGLR 167
           C N   C+E +G  EC  P+G +GLR
Sbjct: 281 CANGGSCSETSGSFECACPRGFYGLR 306



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>DNAK_CORGL (Q8NLY6) Chaperone protein dnaK (Heat shock protein 70) (Heat shock|
           70 kDa protein) (HSP70)
          Length = 618

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 14/23 (60%), Positives = 15/23 (65%)
 Frame = -3

Query: 358 KAVAEVDAATSQGQADAGKENAA 290
           KA+ E DAA    QADAG E AA
Sbjct: 574 KAIYEADAAAGATQADAGAEGAA 596



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>SRP_DROME (P52172) Box A-binding factor (ABF) (GATA-binding factor-B)|
           (Transcription factor GATA-B) (dGATA-B) (Protein
           serpent)
          Length = 1264

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 18/61 (29%), Positives = 25/61 (40%)
 Frame = -3

Query: 391 ATATATASGKNKAVAEVDAATSQGQADAGKENAAATSGEXXXXXXXXXXACRNNAVCAEV 212
           AT TA A+G N A  E + A      +A    AAAT+            +    +V +E 
Sbjct: 74  ATTTAGATGSNAAANETEIAIETENGEAATPTAAATAAAANLSSLESARSQALTSVVSET 133

Query: 211 A 209
           A
Sbjct: 134 A 134



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>STF_LAMBD (P03764) Side tail fiber protein|
          Length = 774

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 21/64 (32%), Positives = 26/64 (40%), Gaps = 3/64 (4%)
 Frame = -3

Query: 391 ATATATASGKNKAVAEVD---AATSQGQADAGKENAAATSGEXXXXXXXXXXACRNNAVC 221
           A+A AT + K+ A AE     AATS G A   + NAAA+                  A  
Sbjct: 176 ASAKATEAEKSAAAAESSKNAAATSAGAAKTSETNAAASQQSAATSASTAATKASEAATS 235

Query: 220 AEVA 209
           A  A
Sbjct: 236 ARDA 239



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>TIE2_MOUSE (Q02858) Angiopoietin-1 receptor precursor (EC 2.7.10.1)|
           (Tyrosine-protein kinase receptor TIE-2) (mTIE2)
           (Tyrosine-protein kinase receptor TEK) (p140 TEK)
           (Tunica interna endothelial cell kinase) (HYK) (STK1)
           (CD202b antigen)
          Length = 1122

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -3

Query: 241 CRNNAVCAEVAGEECVPPQGLFG 173
           C+NN VC E  G EC+ P G  G
Sbjct: 227 CKNNGVCHEDTG-ECICPPGFMG 248


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,833,840
Number of Sequences: 219361
Number of extensions: 574444
Number of successful extensions: 1645
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1643
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2570413340
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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