ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet119a10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 100 7e-18
2dbj|AP006843.2| Oryza sativa (japonica cultivar-group) genomic D... 100 7e-18
3dbj|AK110737.1| Oryza sativa (japonica cultivar-group) cDNA clon... 100 7e-18
4emb|BX640438.1| Bordetella bronchiseptica strain RB50, complete ... 46 0.095
5emb|BX640424.1| Bordetella parapertussis strain 12822, complete ... 46 0.095
6dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 46 0.095
7gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, co... 44 0.38
8gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence 42 1.5
9ref|XM_473173.1| Oryza sativa (japonica cultivar-group), predic... 42 1.5
10emb|AL606659.3|OSJN00108 Oryza sativa genomic DNA, chromosome 4,... 42 1.5
11dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
12gb|AF339083.1| Mus musculus lens epithelium-derived growth facto... 42 1.5
13gb|AF339082.1| Mus musculus lens epithelium-derived growth facto... 42 1.5
14emb|AL731630.2|OSJN00273 Oryza sativa genomic DNA, chromosome 4,... 42 1.5
15gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence 40 5.9
16ref|XM_478962.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.9
17ref|XM_473024.1| Oryza sativa (japonica cultivar-group), predic... 40 5.9
18gb|DQ083856.1| Cortinarius ochraceopallescens voucher TF2000-106... 40 5.9
19gb|AC135557.5| Oryza sativa chromosome 3 BAC OJ1285_H07 genomic ... 40 5.9
20gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, comp... 40 5.9
21gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 5.9
22gb|CP000352.1| Ralstonia metallidurans CH34, complete genome 40 5.9
23gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome 40 5.9
24emb|AL031128.1|DMC49E4 Drosophila melanogaster cosmid clone 49E4 40 5.9
25ref|NM_001003994.1| Danio rerio zgc:92010 (zgc:92010), mRNA 40 5.9
26gb|AC104141.8| Drosophila melanogaster X BAC RP98-9H15 (Roswell ... 40 5.9
27gb|AC104288.4| Drosophila melanogaster X BAC RP98-30G24 (Roswell... 40 5.9
28gb|DQ354110.1| Streptomyces violaceusniger strain DSM 4137 polye... 40 5.9
29dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
30dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
31dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
32dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
33dbj|AP004690.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
34dbj|AP003859.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
35dbj|AP003750.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
36dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 5.9
37dbj|AP005934.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
38dbj|AP005586.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
39gb|BC080267.1| Danio rerio zgc:92010, mRNA (cDNA clone MGC:92010... 40 5.9
40gb|AE003420.2| Drosophila melanogaster chromosome X, section 4 o... 40 5.9
41emb|AL606629.3|OSJN00061 Oryza sativa genomic DNA, chromosome 4,... 40 5.9
42emb|AL606627.3|OSJN00052 Oryza sativa genomic DNA, chromosome 4,... 40 5.9
43emb|AL672049.13| Mouse DNA sequence from clone RP23-188K3 on chr... 40 5.9 
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 99.6 bits (50), Expect = 7e-18
 Identities = 89/102 (87%)
 Strand = Plus / Plus

                                                                            
Query: 140      tcagtacaccttcttggaaaagaaggtgcggaggccgaacagcccctgcggcggcacgca 199
                |||||||||||||||||| |||||||| ||||||||||||||||||||||||||   || 
Sbjct: 40278875 tcagtacaccttcttggagaagaaggtccggaggccgaacagcccctgcggcgggttgct 40278934

                                                          
Query: 200      ctcctcgccggcgacttccgcgcagaccgcgttgttccggca 241
                 ||||||||| || |||||| |||   |||||||||||||||
Sbjct: 40278935 ttcctcgccgccggcttccgagcacgacgcgttgttccggca 40278976
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>dbj|AP006843.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1793G04
          Length = 156714

 Score = 99.6 bits (50), Expect = 7e-18
 Identities = 89/102 (87%)
 Strand = Plus / Plus

                                                                          
Query: 140    tcagtacaccttcttggaaaagaaggtgcggaggccgaacagcccctgcggcggcacgca 199
              |||||||||||||||||| |||||||| ||||||||||||||||||||||||||   || 
Sbjct: 144653 tcagtacaccttcttggagaagaaggtccggaggccgaacagcccctgcggcgggttgct 144712

                                                        
Query: 200    ctcctcgccggcgacttccgcgcagaccgcgttgttccggca 241
               ||||||||| || |||||| |||   |||||||||||||||
Sbjct: 144713 ttcctcgccgccggcttccgagcacgacgcgttgttccggca 144754
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>dbj|AK110737.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-170-F04, full
            insert sequence
          Length = 1577

 Score = 99.6 bits (50), Expect = 7e-18
 Identities = 89/102 (87%)
 Strand = Plus / Minus

                                                                        
Query: 140  tcagtacaccttcttggaaaagaaggtgcggaggccgaacagcccctgcggcggcacgca 199
            |||||||||||||||||| |||||||| ||||||||||||||||||||||||||   || 
Sbjct: 1395 tcagtacaccttcttggagaagaaggtccggaggccgaacagcccctgcggcgggttgct 1336

                                                      
Query: 200  ctcctcgccggcgacttccgcgcagaccgcgttgttccggca 241
             ||||||||| || |||||| |||   |||||||||||||||
Sbjct: 1335 ttcctcgccgccggcttccgagcacgacgcgttgttccggca 1294
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>emb|BX640438.1| Bordetella bronchiseptica strain RB50, complete genome; segment 2/16
          Length = 347786

 Score = 46.1 bits (23), Expect = 0.095
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 359    gttcttgccgctggcggtggcgg 381
              |||||||||||||||||||||||
Sbjct: 307310 gttcttgccgctggcggtggcgg 307288
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>emb|BX640424.1| Bordetella parapertussis strain 12822, complete genome; segment 2/14
          Length = 349146

 Score = 46.1 bits (23), Expect = 0.095
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 359    gttcttgccgctggcggtggcgg 381
              |||||||||||||||||||||||
Sbjct: 305355 gttcttgccgctggcggtggcgg 305333
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 46.1 bits (23), Expect = 0.095
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 346     cggcgacggccttgttcttgccg 368
               |||||||||||||||||||||||
Sbjct: 8904474 cggcgacggccttgttcttgccg 8904452



 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 336     gcgtcgacctcggcgacggc 355
               ||||||||||||||||||||
Sbjct: 7558477 gcgtcgacctcggcgacggc 7558496



 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 239     gcacgcggcggctggcgcgc 258
               ||||||||||||||||||||
Sbjct: 6877195 gcacgcggcggctggcgcgc 6877176
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>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence
          Length = 2914771

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 370     tggcggtggcggttgcggttgc 391
               ||||||||||||||||||||||
Sbjct: 2665233 tggcggtggcggttgcggttgc 2665254
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>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence
          Length = 3694126

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 332     cgcggcgtcgacctcggcgac 352
               |||||||||||||||||||||
Sbjct: 2976532 cgcggcgtcgacctcggcgac 2976552
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>ref|XM_473173.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 414

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 333 gcggcgtcgacctcggcgacg 353
           |||||||||||||||||||||
Sbjct: 332 gcggcgtcgacctcggcgacg 352
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>emb|AL606659.3|OSJN00108 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0070J16,
              complete sequence
          Length = 130718

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 333    gcggcgtcgacctcggcgacg 353
              |||||||||||||||||||||
Sbjct: 109345 gcggcgtcgacctcggcgacg 109365
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 333      gcggcgtcgacctcggcgacg 353
                |||||||||||||||||||||
Sbjct: 25729618 gcggcgtcgacctcggcgacg 25729638



 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 346      cggcgacggccttgttcttg 365
                ||||||||||||||||||||
Sbjct: 24742649 cggcgacggccttgttcttg 24742630
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>gb|AF339083.1| Mus musculus lens epithelium-derived growth factor b (mLedgfb)
           mRNA, complete cds
          Length = 1966

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 368 gctggcggtggcggttgcggttgca 392
           ||||||||||||||| |||||||||
Sbjct: 87  gctggcggtggcggtggcggttgca 111
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>gb|AF339082.1| Mus musculus lens epithelium-derived growth factor a (Ledgfa) mRNA,
           complete cds
          Length = 2831

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 368 gctggcggtggcggttgcggttgca 392
           ||||||||||||||| |||||||||
Sbjct: 87  gctggcggtggcggtggcggttgca 111
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>emb|AL731630.2|OSJN00273 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0072M01,
             complete sequence
          Length = 127712

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 333   gcggcgtcgacctcggcgacg 353
             |||||||||||||||||||||
Sbjct: 52545 gcggcgtcgacctcggcgacg 52565
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>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence
          Length = 3587082

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 23      acgggtggcggacggacgggatcg 46
               |||||||||||||||| |||||||
Sbjct: 3061631 acgggtggcggacggaggggatcg 3061608



 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 336     gcgtcgacctcggcgacggc 355
               ||||||||||||||||||||
Sbjct: 2620594 gcgtcgacctcggcgacggc 2620575
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>ref|XM_478962.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1557

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 195 acgcactcctcgccggcgacttcc 218
           |||| |||||||||||||||||||
Sbjct: 106 acgcgctcctcgccggcgacttcc 83
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>ref|XM_473024.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1146

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 346 cggcgacggccttgttcttg 365
           ||||||||||||||||||||
Sbjct: 451 cggcgacggccttgttcttg 432
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>gb|DQ083856.1| Cortinarius ochraceopallescens voucher TF2000-106 RNA polymerase II
            largest subunit (RPB1) gene, partial cds
          Length = 1392

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 19   gcgaacgggtggcggacggacggg 42
            |||||||||||||||| |||||||
Sbjct: 1207 gcgaacgggtggcggagggacggg 1184
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>gb|AC135557.5| Oryza sativa chromosome 3 BAC OJ1285_H07 genomic sequence, complete
             sequence
          Length = 113685

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 328   tcgtcgcggcgtcgacctcg 347
             ||||||||||||||||||||
Sbjct: 41147 tcgtcgcggcgtcgacctcg 41128
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>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome
          Length = 5928787

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 361    tcttgccgctggcggtggcg 380
              ||||||||||||||||||||
Sbjct: 960652 tcttgccgctggcggtggcg 960633
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 328      tcgtcgcggcgtcgacctcg 347
                ||||||||||||||||||||
Sbjct: 23126179 tcgtcgcggcgtcgacctcg 23126198
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>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome
          Length = 3928089

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 237   cggcacgcggcggctggcgcgctc 260
             |||||||||| |||||||||||||
Sbjct: 82080 cggcacgcggtggctggcgcgctc 82103
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>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome
          Length = 4406967

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 332     cgcggcgtcgacctcggcga 351
               ||||||||||||||||||||
Sbjct: 1595858 cgcggcgtcgacctcggcga 1595839
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>emb|AL031128.1|DMC49E4 Drosophila melanogaster cosmid clone 49E4
          Length = 39749

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 402  tgcttctgctccgcggcggcttgctgctgctg 433
            |||| ||||| |||||| ||||||||||||||
Sbjct: 1083 tgctgctgcttcgcggctgcttgctgctgctg 1052
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>ref|NM_001003994.1| Danio rerio zgc:92010 (zgc:92010), mRNA
          Length = 4084

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 399  ttctgcttctgctccgcggc 418
            ||||||||||||||||||||
Sbjct: 1894 ttctgcttctgctccgcggc 1875
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>gb|AC104141.8| Drosophila melanogaster X BAC RP98-9H15 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 181360

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 402   tgcttctgctccgcggcggcttgctgctgctg 433
             |||| ||||| |||||| ||||||||||||||
Sbjct: 88661 tgctgctgcttcgcggctgcttgctgctgctg 88630
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>gb|AC104288.4| Drosophila melanogaster X BAC RP98-30G24 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 164252

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                              
Query: 402    tgcttctgctccgcggcggcttgctgctgctg 433
              |||| ||||| |||||| ||||||||||||||
Sbjct: 148176 tgctgctgcttcgcggctgcttgctgctgctg 148145
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>gb|DQ354110.1| Streptomyces violaceusniger strain DSM 4137 polyether nigericin
             biosynthetic gene cluster, complete sequence
          Length = 95700

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 365   gccgctggcggtggcggttgcggt 388
             |||||||||||||||||| |||||
Sbjct: 30642 gccgctggcggtggcggtagcggt 30665
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 328     tcgtcgcggcgtcgacctcg 347
               ||||||||||||||||||||
Sbjct: 8313581 tcgtcgcggcgtcgacctcg 8313600
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 236     ccggcacgcggcggctggcg 255
               ||||||||||||||||||||
Sbjct: 8834171 ccggcacgcggcggctggcg 8834152
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 195      acgcactcctcgccggcgacttcc 218
                |||| |||||||||||||||||||
Sbjct: 24035804 acgcgctcctcgccggcgacttcc 24035827
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 328      tcgtcgcggcgtcgacctcg 347
                ||||||||||||||||||||
Sbjct: 23119207 tcgtcgcggcgtcgacctcg 23119226
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>dbj|AP004690.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0437G01
          Length = 147101

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 236    ccggcacgcggcggctggcg 255
              ||||||||||||||||||||
Sbjct: 111920 ccggcacgcggcggctggcg 111901
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>dbj|AP003859.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1033_B09
          Length = 120648

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 236   ccggcacgcggcggctggcg 255
             ||||||||||||||||||||
Sbjct: 17814 ccggcacgcggcggctggcg 17795
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>dbj|AP003750.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1174_G05
          Length = 111202

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 195   acgcactcctcgccggcgacttcc 218
             |||| |||||||||||||||||||
Sbjct: 77412 acgcgctcctcgccggcgacttcc 77435
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 337     cgtcgacctcggcgacggcc 356
               ||||||||||||||||||||
Sbjct: 2710292 cgtcgacctcggcgacggcc 2710311
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>dbj|AP005934.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0023E10
          Length = 155906

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 328   tcgtcgcggcgtcgacctcg 347
             ||||||||||||||||||||
Sbjct: 22415 tcgtcgcggcgtcgacctcg 22434
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>dbj|AP005586.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0450F09
          Length = 148752

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 328    tcgtcgcggcgtcgacctcg 347
              ||||||||||||||||||||
Sbjct: 137503 tcgtcgcggcgtcgacctcg 137522
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>gb|BC080267.1| Danio rerio zgc:92010, mRNA (cDNA clone MGC:92010 IMAGE:7043774),
            complete cds
          Length = 4084

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 399  ttctgcttctgctccgcggc 418
            ||||||||||||||||||||
Sbjct: 1894 ttctgcttctgctccgcggc 1875
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>gb|AE003420.2| Drosophila melanogaster chromosome X, section 4 of 74 of the complete
              sequence
          Length = 308311

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                              
Query: 402    tgcttctgctccgcggcggcttgctgctgctg 433
              |||| ||||| |||||| ||||||||||||||
Sbjct: 259496 tgctgctgcttcgcggctgcttgctgctgctg 259465
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>emb|AL606629.3|OSJN00061 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0091E11,
              complete sequence
          Length = 133856

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 346    cggcgacggccttgttcttg 365
              ||||||||||||||||||||
Sbjct: 132172 cggcgacggccttgttcttg 132153
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>emb|AL606627.3|OSJN00052 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0067K08,
            complete sequence
          Length = 170765

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 346  cggcgacggccttgttcttg 365
            ||||||||||||||||||||
Sbjct: 4365 cggcgacggccttgttcttg 4346
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>emb|AL672049.13| Mouse DNA sequence from clone RP23-188K3 on chromosome 11, complete
             sequence
          Length = 224034

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 354   gccttgttcttgccgctggc 373
             ||||||||||||||||||||
Sbjct: 42293 gccttgttcttgccgctggc 42312


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,509,838
Number of Sequences: 3902068
Number of extensions: 3509838
Number of successful extensions: 100533
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 98973
Number of HSP's gapped (non-prelim): 1551
length of query: 438
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 416
effective length of database: 17,147,199,772
effective search space: 7133235105152
effective search space used: 7133235105152
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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