ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet119a09 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 270 bits (136), Expect = 4e-69 Identities = 202/224 (90%) Strand = Plus / Minus Query: 238 agcgccttgaggagaaacggcttgaatctggtgacattgaccatgacatcctgcttcatg 297 ||||||||||| || |||||||||||||| || ||||| ||| |||| |||||||||||| Sbjct: 15385499 agcgccttgagcaggaacggcttgaatcttgtcacattcaccgtgacgtcctgcttcatg 15385440 Query: 298 acgatctctgcgagcgccggccatccctgcgcgtggatctgcatggggttcttgaacacg 357 |||||||| |||||||||||||| |||||||||||||| |||||||| |||||||||| Sbjct: 15385439 acgatctcggcgagcgccggccagccctgcgcgtggatggccatggggtccttgaacacg 15385380 Query: 358 tagtggtctcgggagtacttgtccttgagagtcgtctcctcctcggacacgtagtactcg 417 |||||||| | | ||||||||||||||| |||||||||||||| || ||||| |||||| Sbjct: 15385379 tagtggtcccttgggtacttgtccttgagcgtcgtctcctcctccgagacgtaatactcg 15385320 Query: 418 acgtaccggagctgcatgtcgcgcgccggctgcccgtagaagtt 461 |||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 15385319 acgtaccggagccgcatgtcgcgcgccggctgcccgtagaagtt 15385276
>dbj|AP003545.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0613F06 Length = 184289 Score = 270 bits (136), Expect = 4e-69 Identities = 202/224 (90%) Strand = Plus / Minus Query: 238 agcgccttgaggagaaacggcttgaatctggtgacattgaccatgacatcctgcttcatg 297 ||||||||||| || |||||||||||||| || ||||| ||| |||| |||||||||||| Sbjct: 53014 agcgccttgagcaggaacggcttgaatcttgtcacattcaccgtgacgtcctgcttcatg 52955 Query: 298 acgatctctgcgagcgccggccatccctgcgcgtggatctgcatggggttcttgaacacg 357 |||||||| |||||||||||||| |||||||||||||| |||||||| |||||||||| Sbjct: 52954 acgatctcggcgagcgccggccagccctgcgcgtggatggccatggggtccttgaacacg 52895 Query: 358 tagtggtctcgggagtacttgtccttgagagtcgtctcctcctcggacacgtagtactcg 417 |||||||| | | ||||||||||||||| |||||||||||||| || ||||| |||||| Sbjct: 52894 tagtggtcccttgggtacttgtccttgagcgtcgtctcctcctccgagacgtaatactcg 52835 Query: 418 acgtaccggagctgcatgtcgcgcgccggctgcccgtagaagtt 461 |||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 52834 acgtaccggagccgcatgtcgcgcgccggctgcccgtagaagtt 52791
>gb|AY106252.1| Zea mays PCO094239 mRNA sequence Length = 457 Score = 176 bits (89), Expect = 4e-41 Identities = 128/141 (90%) Strand = Plus / Minus Query: 324 ctgcgcgtggatctgcatggggttcttgaacacgtagtggtctcgggagtacttgtcctt 383 |||||||||||| ||||| |||| |||||||||||||||||| | | |||||||||||| Sbjct: 457 ctgcgcgtggatgtgcattgggtccttgaacacgtagtggtcccttgggtacttgtcctt 398 Query: 384 gagagtcgtctcctcctcggacacgtagtactcgacgtaccggagctgcatgtcgcgcgc 443 ||| |||||||||||||| || ||||||||||||||||||||||| ||||||||||||| Sbjct: 397 gagcgtcgtctcctcctccgagacgtagtactcgacgtaccggaggcgcatgtcgcgcgc 338 Query: 444 cggctgcccgtagaagttggt 464 |||||| |||||||||||||| Sbjct: 337 cggctggccgtagaagttggt 317
>ref|XM_465315.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2113 Score = 111 bits (56), Expect = 2e-21 Identities = 164/200 (82%) Strand = Plus / Minus Query: 265 ctggtgacattgaccatgacatcctgcttcatgacgatctctgcgagcgccggccatccc 324 ||||||| |||||| ||| ||||||||||||| || | ||||| | | |||||||| Sbjct: 1746 ctggtgaggttgacctcgacgtcctgcttcatgatagtcgcggcgagtgtctgccatccc 1687 Query: 325 tgcgcgtggatctgcatggggttcttgaacacgtagtggtctcgggagtacttgtccttg 384 || ||||||| | | |||||| ||||||||| ||| ||||| ||||| |||| ||| Sbjct: 1686 tgtgcgtggagcgccttggggtccttgaacaccatgtgatctcgcgagtagttgtgcttc 1627 Query: 385 agagtcgtctcctcctcggacacgtagtactcgacgtaccggagctgcatgtcgcgcgcc 444 || |||||||||||||| ||||||||||| |||||||||||||||||||| | |||| Sbjct: 1626 aggctcgtctcctcctcgccgacgtagtactccacgtaccggagctgcatgtccctcgcc 1567 Query: 445 ggctgcccgtagaagttggt 464 ||||||||||| |||||||| Sbjct: 1566 ggctgcccgtaaaagttggt 1547
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 111 bits (56), Expect = 2e-21 Identities = 164/200 (82%) Strand = Plus / Minus Query: 265 ctggtgacattgaccatgacatcctgcttcatgacgatctctgcgagcgccggccatccc 324 ||||||| |||||| ||| ||||||||||||| || | ||||| | | |||||||| Sbjct: 13369149 ctggtgaggttgacctcgacgtcctgcttcatgatagtcgcggcgagtgtctgccatccc 13369090 Query: 325 tgcgcgtggatctgcatggggttcttgaacacgtagtggtctcgggagtacttgtccttg 384 || ||||||| | | |||||| ||||||||| ||| ||||| ||||| |||| ||| Sbjct: 13369089 tgtgcgtggagcgccttggggtccttgaacaccatgtgatctcgcgagtagttgtgcttc 13369030 Query: 385 agagtcgtctcctcctcggacacgtagtactcgacgtaccggagctgcatgtcgcgcgcc 444 || |||||||||||||| ||||||||||| |||||||||||||||||||| | |||| Sbjct: 13369029 aggctcgtctcctcctcgccgacgtagtactccacgtaccggagctgcatgtccctcgcc 13368970 Query: 445 ggctgcccgtagaagttggt 464 ||||||||||| |||||||| Sbjct: 13368969 ggctgcccgtaaaagttggt 13368950
>dbj|AP004854.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1521_G01 Length = 144102 Score = 111 bits (56), Expect = 2e-21 Identities = 164/200 (82%) Strand = Plus / Minus Query: 265 ctggtgacattgaccatgacatcctgcttcatgacgatctctgcgagcgccggccatccc 324 ||||||| |||||| ||| ||||||||||||| || | ||||| | | |||||||| Sbjct: 94400 ctggtgaggttgacctcgacgtcctgcttcatgatagtcgcggcgagtgtctgccatccc 94341 Query: 325 tgcgcgtggatctgcatggggttcttgaacacgtagtggtctcgggagtacttgtccttg 384 || ||||||| | | |||||| ||||||||| ||| ||||| ||||| |||| ||| Sbjct: 94340 tgtgcgtggagcgccttggggtccttgaacaccatgtgatctcgcgagtagttgtgcttc 94281 Query: 385 agagtcgtctcctcctcggacacgtagtactcgacgtaccggagctgcatgtcgcgcgcc 444 || |||||||||||||| ||||||||||| |||||||||||||||||||| | |||| Sbjct: 94280 aggctcgtctcctcctcgccgacgtagtactccacgtaccggagctgcatgtccctcgcc 94221 Query: 445 ggctgcccgtagaagttggt 464 ||||||||||| |||||||| Sbjct: 94220 ggctgcccgtaaaagttggt 94201
>dbj|AK070014.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023038E13, full insert sequence Length = 2112 Score = 107 bits (54), Expect = 3e-20 Identities = 162/198 (81%) Strand = Plus / Minus Query: 265 ctggtgacattgaccatgacatcctgcttcatgacgatctctgcgagcgccggccatccc 324 ||||||| |||||| ||| ||||||||||||| || | ||||| | | |||||||| Sbjct: 1745 ctggtgaggttgacctcgacgtcctgcttcatgatagtcgcggcgagtgtctgccatccc 1686 Query: 325 tgcgcgtggatctgcatggggttcttgaacacgtagtggtctcgggagtacttgtccttg 384 || ||||||| | | |||||| ||||||||| ||| ||||| ||||| |||| ||| Sbjct: 1685 tgtgcgtggagcgccttggggtccttgaacaccatgtgatctcgcgagtagttgtgcttc 1626 Query: 385 agagtcgtctcctcctcggacacgtagtactcgacgtaccggagctgcatgtcgcgcgcc 444 || |||||||||||||| ||||||||||| |||||||||||||||||||| | |||| Sbjct: 1625 aggctcgtctcctcctcgccgacgtagtactccacgtaccggagctgcatgtccctcgcc 1566 Query: 445 ggctgcccgtagaagttg 462 ||||||||||| |||||| Sbjct: 1565 ggctgcccgtaaaagttg 1548
>gb|AY106834.1| Zea mays PCO140173 mRNA sequence Length = 616 Score = 54.0 bits (27), Expect = 4e-04 Identities = 96/119 (80%) Strand = Plus / Minus Query: 281 tgacatcctgcttcatgacgatctctgcgagcgccggccatccctgcgcgtggatctgca 340 |||| ||||||||||||||| ||| ||||||||| |||| |||||| ||||| | || Sbjct: 441 tgacgtcctgcttcatgacggtctgggcgagcgcctgccacccctgcttgtggagcgcca 382 Query: 341 tggggttcttgaacacgtagtggtctcgggagtacttgtccttgagagtcgtctcctcc 399 |||||| ||||||| ||| || || | ||||||||||||||| ||||||||||| Sbjct: 381 tggggtcgctgaacaccacgtgctcccgcgggtacttgtccttgaggctcgtctcctcc 323
>ref|XM_549936.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1812 Score = 46.1 bits (23), Expect = 0.10 Identities = 32/35 (91%) Strand = Plus / Minus Query: 281 tgacatcctgcttcatgacgatctctgcgagcgcc 315 ||||||||||| |||||||||| || ||||||||| Sbjct: 1750 tgacatcctgcgtcatgacgatgtcagcgagcgcc 1716
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 46.1 bits (23), Expect = 0.10 Identities = 32/35 (91%) Strand = Plus / Plus Query: 281 tgacatcctgcttcatgacgatctctgcgagcgcc 315 ||||||||||| |||||||||| || ||||||||| Sbjct: 1065740 tgacatcctgcgtcatgacgatgtcagcgagcgcc 1065774
>dbj|AP002541.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0494A10 Length = 145576 Score = 46.1 bits (23), Expect = 0.10 Identities = 32/35 (91%) Strand = Plus / Plus Query: 281 tgacatcctgcttcatgacgatctctgcgagcgcc 315 ||||||||||| |||||||||| || ||||||||| Sbjct: 103408 tgacatcctgcgtcatgacgatgtcagcgagcgcc 103442
>dbj|AP002868.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0698A04 Length = 141079 Score = 46.1 bits (23), Expect = 0.10 Identities = 32/35 (91%) Strand = Plus / Plus Query: 281 tgacatcctgcttcatgacgatctctgcgagcgcc 315 ||||||||||| |||||||||| || ||||||||| Sbjct: 35054 tgacatcctgcgtcatgacgatgtcagcgagcgcc 35088
>gb|AC154680.2| Mus musculus BAC clone RP24-313N16 from chromosome 13, complete sequence Length = 167328 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Plus Query: 183 accaagtaaccaaataacccaa 204 |||||||||||||||||||||| Sbjct: 136807 accaagtaaccaaataacccaa 136828
>gb|AF521177.1| Hordeum vulgare contig 211252, complete sequence Length = 211664 Score = 44.1 bits (22), Expect = 0.40 Identities = 28/30 (93%) Strand = Plus / Plus Query: 432 catgtcgcgcgccggctgcccgtagaagtt 461 ||||||||||||||||| ||||||||||| Sbjct: 8172 catgtcgcgcgccggctcgccgtagaagtt 8201
>gb|AC165972.4| Mus musculus BAC clone RP23-87D12 from chromosome 17, complete sequence Length = 199737 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 178 aacaaaccaagtaaccaaata 198 ||||||||||||||||||||| Sbjct: 162042 aacaaaccaagtaaccaaata 162022
>gb|AC151353.2| Xenopus tropicalis clone ISB-4M1, complete sequence Length = 110908 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 25 ctgttcccagttcagtacagg 45 ||||||||||||||||||||| Sbjct: 50336 ctgttcccagttcagtacagg 50356
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 119 aaatcaattaagtaactttga 139 ||||||||||||||||||||| Sbjct: 21053999 aaatcaattaagtaactttga 21054019
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 119 aaatcaattaagtaactttga 139 ||||||||||||||||||||| Sbjct: 20980208 aaatcaattaagtaactttga 20980228
>emb|AL713943.3|CNS07YPC Oryza sativa chromosome 12, . BAC OSJNBa0030G16 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 182172 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 119 aaatcaattaagtaactttga 139 ||||||||||||||||||||| Sbjct: 139484 aaatcaattaagtaactttga 139504
>gb|AC092187.2| Drosophila melanogaster clone BACR23N06, complete sequence Length = 164920 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 230 gctggtccagcgccttgagg 249 |||||||||||||||||||| Sbjct: 70879 gctggtccagcgccttgagg 70860
>gb|AC113968.12| Mus musculus chromosome 8, clone RP23-120M17, complete sequence Length = 220191 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 177 caacaaaccaagtaaccaaa 196 |||||||||||||||||||| Sbjct: 46657 caacaaaccaagtaaccaaa 46638
>gb|AC134795.10| Mus musculus chromosome 15, clone RP24-456M21, complete sequence Length = 166650 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 181 aaaccaagtaaccaaataacccaa 204 |||||||| ||||||||||||||| Sbjct: 106755 aaaccaagaaaccaaataacccaa 106732
>ref|XM_712875.1| Candida albicans SC5314 UDP-glucose-starch glucosyltransferase (CaO19_3278), mRNA Length = 1986 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 181 aaaccaagtaaccaaataacccaa 204 |||||||| ||||||||||||||| Sbjct: 426 aaaccaagcaaccaaataacccaa 403
>ref|XM_712809.1| Candida albicans SC5314 UDP-glucose-starch glucosyltransferase (CaO19_10788), mRNA Length = 1986 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 181 aaaccaagtaaccaaataacccaa 204 |||||||| ||||||||||||||| Sbjct: 426 aaaccaagcaaccaaataacccaa 403
>gb|BT011071.1| Drosophila melanogaster SD21488 full insert cDNA Length = 5092 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 230 gctggtccagcgccttgagg 249 |||||||||||||||||||| Sbjct: 4745 gctggtccagcgccttgagg 4726
>gb|AC124404.4| Mus musculus BAC clone RP24-371M10 from chromosome 12, complete sequence Length = 150375 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 176 ccaacaaaccaagtaaccaa 195 |||||||||||||||||||| Sbjct: 78731 ccaacaaaccaagtaaccaa 78750
>gb|AC121948.2| Mus musculus BAC clone RP24-215A14 from 8, complete sequence Length = 152738 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 174 ccccaacaaaccaagtaaccaaat 197 |||||||||||||| ||||||||| Sbjct: 46166 ccccaacaaaccaaataaccaaat 46143
>ref|XM_950158.1| Theileria annulata strain Ankara hypothetical protein (TA05210) partial mRNA Length = 3741 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 266 tggtgacattgaccatgaca 285 |||||||||||||||||||| Sbjct: 2190 tggtgacattgaccatgaca 2209
>emb|AL451049.11| Human DNA sequence from clone RP11-63A2 on chromosome 10 Contains a novel gene and a CpG island, complete sequence Length = 166973 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 204 agacaaacgctctaatcaatcctg 227 |||||||| ||||||||||||||| Sbjct: 126764 agacaaactctctaatcaatcctg 126787
>gb|AC157582.3| Mus musculus chromosome 15, clone RP24-316F24, complete sequence Length = 207168 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 181 aaaccaagtaaccaaataacccaa 204 |||||||| ||||||||||||||| Sbjct: 14715 aaaccaagaaaccaaataacccaa 14738
>emb|X91489.1|SCVIIGENE S.cerevisiae DNA from chromosome VII including CDC55, RPS26A, COX4, G1380, G1601, G1604, G1607, LSR1 and G1615 genes Length = 16776 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 194 aaataacccaagacaaacgctcta 217 ||||||| |||||||||||||||| Sbjct: 13977 aaataactcaagacaaacgctcta 13954
>gb|AC163296.2| Mus musculus BAC clone RP23-135F1 from chromosome 12, complete sequence Length = 226483 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 176 ccaacaaaccaagtaaccaa 195 |||||||||||||||||||| Sbjct: 48393 ccaacaaaccaagtaaccaa 48412
>emb|AL691431.20| Mouse DNA sequence from clone RP23-257P7 on chromosome 4 Contains the 5' end of a novel gene (2810031P15Rik), a ribosomal protein L10 (Rpl10) pseudogene, a ribosomal protein S6 (Rps6) pseudogene and two CpG islands, complete sequence Length = 199847 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 154 atgagaactcaccagctata 173 |||||||||||||||||||| Sbjct: 55826 atgagaactcaccagctata 55807
>gb|AY095050.1| Drosophila melanogaster LD39323 full insert cDNA Length = 3483 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 230 gctggtccagcgccttgagg 249 |||||||||||||||||||| Sbjct: 3171 gctggtccagcgccttgagg 3152
>gb|AC022398.7| Homo sapiens chromosome 10 clone RP11-491H19, complete sequence Length = 169184 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 204 agacaaacgctctaatcaatcctg 227 |||||||| ||||||||||||||| Sbjct: 141371 agacaaactctctaatcaatcctg 141348
>ref|NM_057849.3| Drosophila melanogaster Chromodomain-helicase-DNA-binding protein CG3733-RA (Chd1), mRNA Length = 6288 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 230 gctggtccagcgccttgagg 249 |||||||||||||||||||| Sbjct: 4745 gctggtccagcgccttgagg 4726
>gb|AC112986.16| Mus musculus chromosome 1, clone RP24-250E15, complete sequence Length = 157764 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 2 atcacttcatcagtatgtat 21 |||||||||||||||||||| Sbjct: 112754 atcacttcatcagtatgtat 112773
>gb|AC007765.1|AC007765 Drosophila melanogaster, chromosome 2L, region 23C1-23C5, P1 clones DS02190 and DS00906, complete sequence Length = 163403 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 230 gctggtccagcgccttgagg 249 |||||||||||||||||||| Sbjct: 49063 gctggtccagcgccttgagg 49044
>emb|Z72702.1|SCYGL180W S.cerevisiae chromosome VII reading frame ORF YGL180w Length = 4312 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 194 aaataacccaagacaaacgctcta 217 ||||||| |||||||||||||||| Sbjct: 1426 aaataactcaagacaaacgctcta 1403
>gb|AE003581.4| Drosophila melanogaster chromosome 2L, section 10 of 83 of the complete sequence Length = 314957 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 230 gctggtccagcgccttgagg 249 |||||||||||||||||||| Sbjct: 151637 gctggtccagcgccttgagg 151656
>gb|L77907.1|DROCHD1A Drosophila melanogaster chromodomain-helicase-DNA-binding (CHD-1) mRNA, complete cds Length = 6242 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 230 gctggtccagcgccttgagg 249 |||||||||||||||||||| Sbjct: 4697 gctggtccagcgccttgagg 4678
>dbj|AP006629.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT10B11, TM0008, complete sequence Length = 116223 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 259 ttgaatctggtgacattgac 278 |||||||||||||||||||| Sbjct: 24859 ttgaatctggtgacattgac 24840
>gb|AC163287.4| Mus musculus BAC clone RP23-279E21 from chromosome 8, complete sequence Length = 201346 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 174 ccccaacaaaccaagtaaccaaat 197 |||||||||||||| ||||||||| Sbjct: 38697 ccccaacaaaccaaataaccaaat 38720
>gb|AC153654.4| Mus musculus BAC clone RP23-457N11 from chromosome 12, complete sequence Length = 193547 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 176 ccaacaaaccaagtaaccaa 195 |||||||||||||||||||| Sbjct: 167969 ccaacaaaccaagtaaccaa 167988
>gb|AY147013.1| Leishmania major DNA polymerase I type A (POLIA) mRNA, complete cds; nuclear gene for mitochondrial product Length = 2796 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 325 tgcgcgtggatctgcatggggttc 348 |||||||||||||||||| ||||| Sbjct: 1202 tgcgcgtggatctgcatgaggttc 1225
>dbj|D29991.1| Saccharomyces cerevisiae gene for Apg1p, complete cds Length = 3525 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 194 aaataacccaagacaaacgctcta 217 ||||||| |||||||||||||||| Sbjct: 724 aaataactcaagacaaacgctcta 701 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,728,756 Number of Sequences: 3902068 Number of extensions: 3728756 Number of successful extensions: 67697 Number of sequences better than 10.0: 46 Number of HSP's better than 10.0 without gapping: 46 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 67510 Number of HSP's gapped (non-prelim): 187 length of query: 464 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 442 effective length of database: 17,147,199,772 effective search space: 7579062299224 effective search space used: 7579062299224 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
