ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet119a05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CTR1_HUMAN (P30825) High-affinity cationic amino acid transporte... 29 4.3
2EFG_THEFY (Q47LJ0) Elongation factor G (EF-G) 29 4.3
3CLS1_BACSU (P45860) Probable cardiolipin synthetase 1 (EC 2.7.8.... 29 4.3
4TILS_XANAC (Q8PIY5) tRNA(Ile)-lysidine synthase (EC 6.3.4.-) (tR... 29 5.7
5CD97_HUMAN (P48960) CD97 antigen precursor (Leukocyte antigen CD97) 28 7.4
6G6PI_SYMTH (Q67QQ0) Glucose-6-phosphate isomerase (EC 5.3.1.9) (... 28 9.7

>CTR1_HUMAN (P30825) High-affinity cationic amino acid transporter 1 (CAT-1)|
           (CAT1) (System Y+ basic amino acid transporter)
           (Ecotropic retroviral leukemia receptor homolog) (ERR)
           (Ecotropic retrovirus receptor homolog)
          Length = 629

 Score = 29.3 bits (64), Expect = 4.3
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +1

Query: 199 IQQDIDAWIQSSILMLLSGVMVLGILLWHRVEHVLCANRRLHRSGGL 339
           +Q D   W++ ++ ML+  ++  G  LWH  E  L A++     G L
Sbjct: 579 MQLDQGTWVRFAVWMLIGFIIYFGYGLWHSEEASLDADQARTPDGNL 625



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>EFG_THEFY (Q47LJ0) Elongation factor G (EF-G)|
          Length = 704

 Score = 29.3 bits (64), Expect = 4.3
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +1

Query: 289 VEHVLCANRRLHRSGG-LPALCYSIIRGTHHHHGANTVVDAVIAHTPEP 432
           VE ++ A RR   SG  +P LC S  +    + G   ++DA++A+ P P
Sbjct: 240 VEQLVAAIRRATISGAAVPVLCGSAFK----NKGVQPLLDAIVAYLPSP 284



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>CLS1_BACSU (P45860) Probable cardiolipin synthetase 1 (EC 2.7.8.-)|
           (Cardiolipin synthase 1) (CL synthase 1)
          Length = 500

 Score = 29.3 bits (64), Expect = 4.3
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +3

Query: 9   CLISIIWYPISTKVLENKCSPNTSEWKH 92
           C ISII + I + +LEN+ S +T  W H
Sbjct: 37  CYISIILFSIYSLILENRTSQHTLLWIH 64



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>TILS_XANAC (Q8PIY5) tRNA(Ile)-lysidine synthase (EC 6.3.4.-)|
           (tRNA(Ile)-lysidine synthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase)
          Length = 440

 Score = 28.9 bits (63), Expect = 5.7
 Identities = 20/62 (32%), Positives = 27/62 (43%)
 Frame = +1

Query: 235 ILMLLSGVMVLGILLWHRVEHVLCANRRLHRSGGLPALCYSIIRGTHHHHGANTVVDAVI 414
           +L+  SG M   +LL     H+L A  R   +G         +R  H HHG +   DA  
Sbjct: 23  VLLAYSGGMDSSVLL-----HLLAARPRYRHAG---------LRALHVHHGLHADADAWA 68

Query: 415 AH 420
           AH
Sbjct: 69  AH 70



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>CD97_HUMAN (P48960) CD97 antigen precursor (Leukocyte antigen CD97)|
          Length = 835

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -2

Query: 170 CWLSATSGFLLSTLAVC*TFTVLCLSVLPL*CIW 69
           CWL    GFL S L    TF +LC +V+ +  +W
Sbjct: 684 CWLDFEQGFLWSFLGPV-TFIILCNAVIFVTTVW 716



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>G6PI_SYMTH (Q67QQ0) Glucose-6-phosphate isomerase (EC 5.3.1.9) (GPI)|
           (Phosphoglucose isomerase) (PGI) (Phosphohexose
           isomerase) (PHI)
          Length = 448

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +1

Query: 253 GVMVLGILLWHRVEHV-LCANRRLHRSGGLPALCYSIIRGTHHHHG 387
           G+  LG    H V H    A R  H  GG+P L  ++   T +H+G
Sbjct: 349 GLGFLGGQTLHHVNHTAFLATRLAHTEGGVPNLTLTLPELTPYHYG 394


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,043,281
Number of Sequences: 219361
Number of extensions: 1028072
Number of successful extensions: 3041
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2927
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3040
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2511994855
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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