ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet119a04 |
|---|---|
| Clone Library Name | barley_pub |
>PORA_WHEAT (Q41578) Protochlorophyllide reductase A, chloroplast precursor (EC| 1.3.1.33) (PCR A) (NADPH-protochlorophyllide oxidoreductase A) (POR A) Length = 388 Score = 117 bits (292), Expect = 9e-27 Identities = 57/57 (100%), Positives = 57/57 (100%) Frame = -2 Query: 392 GKRLAQVVAEPSLTKSGVYWSWNKDSASFENQLSQEASDPEKARKVWELSEKLVGLA 222 GKRLAQVVAEPSLTKSGVYWSWNKDSASFENQLSQEASDPEKARKVWELSEKLVGLA Sbjct: 332 GKRLAQVVAEPSLTKSGVYWSWNKDSASFENQLSQEASDPEKARKVWELSEKLVGLA 388
>POR_AVESA (P15904) Protochlorophyllide reductase (EC 1.3.1.33) (PCR)| (NADPH-protochlorophyllide oxidoreductase) (POR) (Fragment) Length = 313 Score = 115 bits (288), Expect = 3e-26 Identities = 56/57 (98%), Positives = 56/57 (98%) Frame = -2 Query: 392 GKRLAQVVAEPSLTKSGVYWSWNKDSASFENQLSQEASDPEKARKVWELSEKLVGLA 222 GKRLAQVV EPSLTKSGVYWSWNKDSASFENQLSQEASDPEKARKVWELSEKLVGLA Sbjct: 257 GKRLAQVVGEPSLTKSGVYWSWNKDSASFENQLSQEASDPEKARKVWELSEKLVGLA 313
>PORA_HORVU (P13653) Protochlorophyllide reductase A, chloroplast precursor (EC| 1.3.1.33) (PCR A) (NADPH-protochlorophyllide oxidoreductase A) (POR A) Length = 388 Score = 114 bits (286), Expect = 4e-26 Identities = 56/57 (98%), Positives = 56/57 (98%) Frame = -2 Query: 392 GKRLAQVVAEPSLTKSGVYWSWNKDSASFENQLSQEASDPEKARKVWELSEKLVGLA 222 GKRLAQVVAEP LTKSGVYWSWNKDSASFENQLSQEASDPEKARKVWELSEKLVGLA Sbjct: 332 GKRLAQVVAEPVLTKSGVYWSWNKDSASFENQLSQEASDPEKARKVWELSEKLVGLA 388
>PORA_CUCSA (Q41249) Protochlorophyllide reductase, chloroplast precursor (EC| 1.3.1.33) (PCR) (NADPH-protochlorophyllide oxidoreductase) (POR) Length = 398 Score = 110 bits (276), Expect = 6e-25 Identities = 54/57 (94%), Positives = 56/57 (98%) Frame = -2 Query: 392 GKRLAQVVAEPSLTKSGVYWSWNKDSASFENQLSQEASDPEKARKVWELSEKLVGLA 222 GKRLAQVV+EPSLTKSGVYWSWNK+SASFENQLSQEASD EKARKVWELSEKLVGLA Sbjct: 342 GKRLAQVVSEPSLTKSGVYWSWNKNSASFENQLSQEASDAEKARKVWELSEKLVGLA 398
>POR_DAUCA (Q9SDT1) Protochlorophyllide reductase, chloroplast precursor (EC| 1.3.1.33) (PCR) (NADPH-protochlorophyllide oxidoreductase) (POR) Length = 398 Score = 110 bits (274), Expect = 1e-24 Identities = 53/57 (92%), Positives = 56/57 (98%) Frame = -2 Query: 392 GKRLAQVVAEPSLTKSGVYWSWNKDSASFENQLSQEASDPEKARKVWELSEKLVGLA 222 GKRLAQVV+EPSLTKSGVYWSWNKDSASFENQLS+EASD EKARKVWE+SEKLVGLA Sbjct: 342 GKRLAQVVSEPSLTKSGVYWSWNKDSASFENQLSEEASDVEKARKVWEVSEKLVGLA 398
>PORB_HORVU (Q42850) Protochlorophyllide reductase B, chloroplast precursor (EC| 1.3.1.33) (PCR B) (NADPH-protochlorophyllide oxidoreductase B) (POR B) Length = 395 Score = 109 bits (273), Expect = 1e-24 Identities = 53/57 (92%), Positives = 56/57 (98%) Frame = -2 Query: 392 GKRLAQVVAEPSLTKSGVYWSWNKDSASFENQLSQEASDPEKARKVWELSEKLVGLA 222 GKRLAQVV+EPSLTKSGVYWSWNK+SASFENQLS+EASD EKARKVWELSEKLVGLA Sbjct: 339 GKRLAQVVSEPSLTKSGVYWSWNKNSASFENQLSEEASDTEKARKVWELSEKLVGLA 395
>PORA_ARATH (Q42536) Protochlorophyllide reductase A, chloroplast precursor (EC| 1.3.1.33) (PCR A) (NADPH-protochlorophyllide oxidoreductase A) (POR A) Length = 405 Score = 107 bits (267), Expect = 7e-24 Identities = 52/57 (91%), Positives = 55/57 (96%) Frame = -2 Query: 392 GKRLAQVVAEPSLTKSGVYWSWNKDSASFENQLSQEASDPEKARKVWELSEKLVGLA 222 GKRLAQVVA+PSLTKSGVYWSWNK SASFENQLSQEASD EKAR+VWE+SEKLVGLA Sbjct: 349 GKRLAQVVADPSLTKSGVYWSWNKTSASFENQLSQEASDVEKARRVWEVSEKLVGLA 405
>POR_PEA (Q01289) Protochlorophyllide reductase, chloroplast precursor (EC| 1.3.1.33) (PCR) (NADPH-protochlorophyllide oxidoreductase) (POR) Length = 399 Score = 105 bits (262), Expect = 3e-23 Identities = 51/57 (89%), Positives = 54/57 (94%) Frame = -2 Query: 392 GKRLAQVVAEPSLTKSGVYWSWNKDSASFENQLSQEASDPEKARKVWELSEKLVGLA 222 GKRLAQVV++PSLTKSGVYWSWN SASFENQLSQEASD EKARKVWE+SEKLVGLA Sbjct: 343 GKRLAQVVSDPSLTKSGVYWSWNNASASFENQLSQEASDAEKARKVWEVSEKLVGLA 399
>PORB_ARATH (P21218) Protochlorophyllide reductase B, chloroplast precursor (EC| 1.3.1.33) (PCR B) (NADPH-protochlorophyllide oxidoreductase B) (POR B) Length = 401 Score = 104 bits (259), Expect = 6e-23 Identities = 50/57 (87%), Positives = 54/57 (94%) Frame = -2 Query: 392 GKRLAQVVAEPSLTKSGVYWSWNKDSASFENQLSQEASDPEKARKVWELSEKLVGLA 222 GKRLAQVV++PSLTKSGVYWSWN SASFENQLS+EASD EKARKVWE+SEKLVGLA Sbjct: 345 GKRLAQVVSDPSLTKSGVYWSWNNASASFENQLSEEASDVEKARKVWEISEKLVGLA 401
>PORC_ARATH (O48741) Protochlorophyllide reductase C, chloroplast precursor (EC| 1.3.1.33) (PCR C) (NADPH-protochlorophyllide oxidoreductase C) (POR C) Length = 401 Score = 99.0 bits (245), Expect = 2e-21 Identities = 46/57 (80%), Positives = 54/57 (94%) Frame = -2 Query: 392 GKRLAQVVAEPSLTKSGVYWSWNKDSASFENQLSQEASDPEKARKVWELSEKLVGLA 222 GKRLAQVV++PSL KSGVYWSWN +S+SFENQLS+EASD EKA+K+WE+SEKLVGLA Sbjct: 345 GKRLAQVVSDPSLGKSGVYWSWNNNSSSFENQLSKEASDAEKAKKLWEVSEKLVGLA 401
>POR_MARPA (O80333) Protochlorophyllide reductase, chloroplast precursor (EC| 1.3.1.33) (PCR) (NADPH-protochlorophyllide oxidoreductase) (POR) Length = 458 Score = 96.7 bits (239), Expect = 1e-20 Identities = 42/56 (75%), Positives = 53/56 (94%) Frame = -2 Query: 392 GKRLAQVVAEPSLTKSGVYWSWNKDSASFENQLSQEASDPEKARKVWELSEKLVGL 225 GKR+AQVV++P L+KSGVYWSWNKDS SFEN+LS+EAS+PEKA+++WELSE+L GL Sbjct: 402 GKRMAQVVSDPKLSKSGVYWSWNKDSGSFENELSEEASNPEKAKRLWELSERLSGL 457
>POR_CHLRE (Q39617) Protochlorophyllide reductase, chloroplast precursor (EC| 1.3.1.33) (PCR) (NADPH-protochlorophyllide oxidoreductase) (POR) Length = 397 Score = 76.6 bits (187), Expect = 1e-14 Identities = 31/57 (54%), Positives = 45/57 (78%) Frame = -2 Query: 392 GKRLAQVVAEPSLTKSGVYWSWNKDSASFENQLSQEASDPEKARKVWELSEKLVGLA 222 G+RLA V+++P L KSG YWSW+ + SF+NQ+S+E +D KA K+W++S KLVGL+ Sbjct: 340 GRRLAAVISDPKLNKSGAYWSWSSTTGSFDNQVSEEVADDSKASKLWDISAKLVGLS 396
>POR_PLEBO (O66148) Light-dependent protochlorophyllide reductase (EC| 1.3.1.33) (PCR) (NADPH-protochlorophyllide oxidoreductase) (POR) (LPOR) Length = 322 Score = 67.0 bits (162), Expect = 1e-11 Identities = 32/61 (52%), Positives = 44/61 (72%), Gaps = 4/61 (6%) Frame = -2 Query: 392 GKRLAQVVAEPSLTKSGVYWSWN----KDSASFENQLSQEASDPEKARKVWELSEKLVGL 225 G+R AQVVA+P +SGV+WSW + SF +LS++ +D KA+++WELSEKLVGL Sbjct: 262 GERTAQVVADPEFKQSGVHWSWGNRQKEGRESFVQELSEKVTDDAKAKRMWELSEKLVGL 321 Query: 224 A 222 A Sbjct: 322 A 322
>POR_SYNY3 (Q59987) Light-dependent protochlorophyllide reductase (EC| 1.3.1.33) (PCR) (NADPH-protochlorophyllide oxidoreductase) (POR) (LPOR) Length = 322 Score = 61.6 bits (148), Expect = 4e-10 Identities = 30/60 (50%), Positives = 44/60 (73%), Gaps = 4/60 (6%) Frame = -2 Query: 392 GKRLAQVVAEPSLTKSGVYWSW-NKDSA---SFENQLSQEASDPEKARKVWELSEKLVGL 225 G+R+A VVA+ SGV+WSW N+ A +F +LS++ SD +KA+++W+LSEKLVGL Sbjct: 262 GERVAMVVADDKFKDSGVHWSWGNRQQAGREAFVQELSEQGSDAQKAQRMWDLSEKLVGL 321
>RDH13_MOUSE (Q8CEE7) Retinol dehydrogenase 13 (EC 1.1.1.-)| Length = 334 Score = 33.9 bits (76), Expect = 0.096 Identities = 22/56 (39%), Positives = 30/56 (53%) Frame = -2 Query: 371 VAEPSLTKSGVYWSWNKDSASFENQLSQEASDPEKARKVWELSEKLVGLA*STANP 204 VAE SG Y+ ++ A S EA D E AR++W S +LVGLA + +P Sbjct: 276 VAEELENVSGKYFDGLREKAP-----SPEAEDEEVARRLWTESARLVGLAMAHGSP 326
>FIG2_YEAST (P25653) Factor-induced gene 2 precursor (Cell wall adhesin FIG2)| Length = 1609 Score = 30.8 bits (68), Expect = 0.82 Identities = 20/56 (35%), Positives = 29/56 (51%) Frame = +1 Query: 184 RCMHASMGFAVDHASPTSFSLSSQTLRAFSGSLASWESWFSKDAESLFQLQYTPDF 351 R H+S F + +P+S SL S T F+ S+ +SW S ++E L T DF Sbjct: 140 RTSHSSSSFELPVTAPSSSSLPSSTSLTFT-SVNPSQSWTSFNSEKSSALSSTIDF 194
>RDH13_HUMAN (Q8NBN7) Retinol dehydrogenase 13 (EC 1.1.1.-)| Length = 331 Score = 30.8 bits (68), Expect = 0.82 Identities = 20/49 (40%), Positives = 25/49 (51%) Frame = -2 Query: 371 VAEPSLTKSGVYWSWNKDSASFENQLSQEASDPEKARKVWELSEKLVGL 225 VAE SG Y+ K A + EA D E AR++W S +LVGL Sbjct: 276 VAEELADVSGKYFDGLKQKAP-----APEAEDEEVARRLWAESARLVGL 319
>RDH14_HUMAN (Q9HBH5) Retinol dehydrogenase 14 (EC 1.1.1.-) (Alcohol| dehydrogenase PAN2) Length = 336 Score = 30.8 bits (68), Expect = 0.82 Identities = 13/27 (48%), Positives = 19/27 (70%) Frame = -2 Query: 305 ENQLSQEASDPEKARKVWELSEKLVGL 225 E +L +A D ARK+W++SE +VGL Sbjct: 308 EEELLPKAMDESVARKLWDISEVMVGL 334
>RDH14_MOUSE (Q9ERI6) Retinol dehydrogenase 14 (EC 1.1.1.-) (Alcohol| dehydrogenase PAN2) Length = 334 Score = 30.0 bits (66), Expect = 1.4 Identities = 12/27 (44%), Positives = 19/27 (70%) Frame = -2 Query: 305 ENQLSQEASDPEKARKVWELSEKLVGL 225 E +L +A D ARK+W++SE +VG+ Sbjct: 306 EEELLPKAMDESVARKLWDISEVMVGI 332
>WWOX_MOUSE (Q91WL8) WW domain-containing oxidoreductase (EC 1.1.1.-)| Length = 414 Score = 29.6 bits (65), Expect = 1.8 Identities = 12/21 (57%), Positives = 16/21 (76%) Frame = -2 Query: 293 SQEASDPEKARKVWELSEKLV 231 S+EA E AR +WELSE+L+ Sbjct: 385 SEEAQSEETARALWELSERLI 405
>ATXR3_ARATH (O23372) Probable histone-lysine N-methyltransferase ATXR3 (EC| 2.1.1.43) (Trithorax-related protein 3) (TRX-related protein 3) (Protein SET DOMAIN GROUP 2) Length = 2351 Score = 29.6 bits (65), Expect = 1.8 Identities = 21/56 (37%), Positives = 31/56 (55%) Frame = +3 Query: 15 YYSNVCRKLYIFHTRSMHSRGHSQGPSCVIELLKRRKHDNYQISLKKRQVEHRPAS 182 Y S+ CRKL +RS+HS +SQ + E L R + + SL+K +H+ AS Sbjct: 322 YGSSKCRKLSDDCSRSLHSDHYSQHSA---ERLYRDSYPSKNSSLEKYPRKHQDAS 374
>AMYI_SACDI (P29760) Glucoamylase S2 precursor (EC 3.2.1.3) (Glucan| 1,4-alpha-glucosidase) (1,4-alpha-D-glucan glucohydrolase) (GAII) Length = 768 Score = 29.3 bits (64), Expect = 2.4 Identities = 12/34 (35%), Positives = 19/34 (55%) Frame = -2 Query: 374 VVAEPSLTKSGVYWSWNKDSASFENQLSQEASDP 273 V+A PS T ++ W +DSA N + ++DP Sbjct: 372 VIASPSQTHPDYFYQWIRDSALTINSIVSHSADP 405
>AMYH_SACDI (P04065) Glucoamylase S1 precursor (EC 3.2.1.3) (Glucan| 1,4-alpha-glucosidase) (1,4-alpha-D-glucan glucohydrolase) (GAI) Length = 767 Score = 29.3 bits (64), Expect = 2.4 Identities = 12/34 (35%), Positives = 19/34 (55%) Frame = -2 Query: 374 VVAEPSLTKSGVYWSWNKDSASFENQLSQEASDP 273 V+A PS T ++ W +DSA N + ++DP Sbjct: 371 VIASPSQTHPDYFYQWIRDSALTINSIVSHSADP 404
>TIE2_BRARE (O73791) Tyrosine-protein kinase receptor Tie-2 precursor (EC| 2.7.10.1) Length = 1116 Score = 28.9 bits (63), Expect = 3.1 Identities = 17/45 (37%), Positives = 25/45 (55%) Frame = +1 Query: 175 RRPRCMHASMGFAVDHASPTSFSLSSQTLRAFSGSLASWESWFSK 309 R+ R + FA+ H T+ +LSSQ L AFS +A S+ S+ Sbjct: 907 RKSRVLETDPAFAIAHR--TASTLSSQQLLAFSADVARGMSYLSQ 949
>WWOX_BRARE (Q803A8) WW domain-containing oxidoreductase (EC 1.1.1.-)| Length = 412 Score = 28.5 bits (62), Expect = 4.1 Identities = 12/21 (57%), Positives = 15/21 (71%) Frame = -2 Query: 293 SQEASDPEKARKVWELSEKLV 231 S +A DP A +WELSE+LV Sbjct: 382 SPQAQDPAAALSLWELSERLV 402
>GANA_HUMIN (P83691) Arabinogalactan endo-1,4-beta-galactosidase (EC 3.2.1.89)| (Endo-1,4-beta-galactanase) (Galactanase) Length = 332 Score = 28.5 bits (62), Expect = 4.1 Identities = 13/30 (43%), Positives = 18/30 (60%) Frame = -3 Query: 97 QEGPCEWPRECIDLVWKMYNFRQTLE**NR 8 Q P WP + +L WK+YN+ TL+ NR Sbjct: 92 QTTPAGWPSDINNLAWKLYNY--TLDSMNR 119
>NIFK_THIFE (P15052) Nitrogenase molybdenum-iron protein beta chain (EC| 1.18.6.1) (Nitrogenase component I) (Dinitrogenase) Length = 518 Score = 28.5 bits (62), Expect = 4.1 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%) Frame = -2 Query: 311 SFENQL-SQEASDPEKARKVWELSEKLVGLA*STANPMDACMHLGR 177 +FEN+L + + + ++ K WE EK + NP AC LGR Sbjct: 30 TFENRLPADQVARGQEWTKTWEYREKNFAREALSVNPDKACQPLGR 75
>RPOB_STRPM (Q48VR1) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1188 Score = 28.1 bits (61), Expect = 5.3 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 2/59 (3%) Frame = -1 Query: 243 REARRTRMIHRKSHGCMHASRTPADAQLVVFLNL--FGNYHVYAFLEAQLRRRGLASGR 73 R R +H +G M TP + + NL FG+ + Y F++ R+ A+GR Sbjct: 502 RAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSSFGHLNKYGFIQTPYRKVDRATGR 560
>RPOB_STRP6 (Q5XE97) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1188 Score = 28.1 bits (61), Expect = 5.3 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 2/59 (3%) Frame = -1 Query: 243 REARRTRMIHRKSHGCMHASRTPADAQLVVFLNL--FGNYHVYAFLEAQLRRRGLASGR 73 R R +H +G M TP + + NL FG+ + Y F++ R+ A+GR Sbjct: 502 RAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSSFGHLNKYGFIQTPYRKVDRATGR 560
>RPOB_STRP3 (Q8K8W3) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1188 Score = 28.1 bits (61), Expect = 5.3 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 2/59 (3%) Frame = -1 Query: 243 REARRTRMIHRKSHGCMHASRTPADAQLVVFLNL--FGNYHVYAFLEAQLRRRGLASGR 73 R R +H +G M TP + + NL FG+ + Y F++ R+ A+GR Sbjct: 502 RAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSSFGHLNKYGFIQTPYRKVDRATGR 560
>RFWD2_HUMAN (Q8NHY2) Ring finger and WD repeat domain protein 2 (EC 6.3.2.-)| (Ubiquitin-protein ligase COP1) (Constitutive photomorphogenesis protein 1 homolog) (hCOP1) Length = 731 Score = 28.1 bits (61), Expect = 5.3 Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 2/72 (2%) Frame = +1 Query: 181 PRCMHASMGFAVDHASPTSFSLSSQTLRA--FSGSLASWESWFSKDAESLFQLQYTPDFV 354 P H+S+ + +++ P FS SSQT + ++ +LAS + E L Q ++ Sbjct: 318 PSPSHSSIIDSTEYSQPPGFSGSSQTKKQPWYNSTLASRRKRLTAHFEDLEQCYFSTRMS 377 Query: 355 RLGSATTCASLL 390 R+ + AS L Sbjct: 378 RISDDSRTASQL 389
>ARLY_CHLTE (Q8KDJ5) Argininosuccinate lyase (EC 4.3.2.1) (Arginosuccinase)| (ASAL) Length = 463 Score = 28.1 bits (61), Expect = 5.3 Identities = 13/36 (36%), Positives = 19/36 (52%) Frame = +1 Query: 286 SWESWFSKDAESLFQLQYTPDFVRLGSATTCASLLP 393 +W S F +DA+ L L+ + LG+A S LP Sbjct: 178 AWHSMFGRDAQRLADLRKRANISPLGAAAFAGSTLP 213
>DHAK_ECOLI (P76015) PTS-dependent dihydroxyacetone kinase,| dihydroxyacetone-binding subunit dhaK (EC 2.7.-.-) Length = 366 Score = 28.1 bits (61), Expect = 5.3 Identities = 13/25 (52%), Positives = 16/25 (64%) Frame = -2 Query: 248 LSEKLVGLA*STANPMDACMHLGRR 174 L EKLVG A + +DAC LGR+ Sbjct: 165 LIEKLVGAAAERGDSLDACAELGRK 189
>CTPI_MYCTU (Q10900) Probable cation-transporting ATPase I (EC 3.6.3.-)| Length = 1625 Score = 27.7 bits (60), Expect = 6.9 Identities = 14/47 (29%), Positives = 23/47 (48%) Frame = +1 Query: 181 PRCMHASMGFAVDHASPTSFSLSSQTLRAFSGSLASWESWFSKDAES 321 PRC A G +HA L+ Q LR + + +W++ + D E+ Sbjct: 1175 PRCRLADPGVDHEHAESVVRHLAEQGLRVLAVAQRTWDNGTTHDDET 1221
>ROS_HUMAN (P08922) Proto-oncogene tyrosine-protein kinase ROS precursor (EC| 2.7.10.1) (c-ros-1) Length = 2347 Score = 27.3 bits (59), Expect = 9.0 Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 3/38 (7%) Frame = +1 Query: 232 TSFSLSSQTLR---AFSGSLASWESWFSKDAESLFQLQ 336 TS +L +Q LR F+GS +S +W SK+ + +FQ + Sbjct: 1792 TSNNLQNQNLRWKMTFNGSCSSVCTWKSKNLKGIFQFR 1829
>MDLB_PSEPU (P20932) L(+)-mandelate dehydrogenase (EC 1.-.-.-) (S-mandelate| dehydrogenase) (MDH) Length = 393 Score = 27.3 bits (59), Expect = 9.0 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%) Frame = +2 Query: 134 LPNKFKKTTS*ASAGVLDACMHP-WDLRWI 220 L N+FK S ++ VLD C+HP W L ++ Sbjct: 169 LHNRFKIPMSYSAKVVLDGCLHPRWSLDFV 198 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 51,363,023 Number of Sequences: 219361 Number of extensions: 848600 Number of successful extensions: 2530 Number of sequences better than 10.0: 36 Number of HSP's better than 10.0 without gapping: 2475 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2527 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 1375720320 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
