ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet117h10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1OLFM_RANCA (Q07081) Olfactomedin precursor (Olfactory mucus prot... 30 1.3
2SESN1_MOUSE (P58006) Sestrin-1 (p53-regulated protein PA26) 28 6.6

>OLFM_RANCA (Q07081) Olfactomedin precursor (Olfactory mucus protein)|
          Length = 464

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -2

Query: 138 YICLCTVVNLHFCLFLLASNVAGETRGNLDCLC 40
           YICL T+V +H     +A N  G   G   C+C
Sbjct: 2   YICLLTLVLIHAAAAFVAQNATGILAGKDHCVC 34



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>SESN1_MOUSE (P58006) Sestrin-1 (p53-regulated protein PA26)|
          Length = 492

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = -2

Query: 195 CSVSPP--CDVDHTIQMQDLTYICLCTVVNLHFCLFLLASNVAG 70
           C +SP   CD  HT +   ++  C+C + N +  +  +  N AG
Sbjct: 219 CGISPEIHCDGGHTFRPPSVSNYCICDITNGNHSVDEMQVNSAG 262


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,690,567
Number of Sequences: 219361
Number of extensions: 369076
Number of successful extensions: 994
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 990
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 994
length of database: 80,573,946
effective HSP length: 41
effective length of database: 71,580,145
effective search space used: 1717923480
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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