ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet117h10 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY110073.1| Zea mays CL26733_1 mRNA sequence Length = 731 Score = 83.8 bits (42), Expect = 2e-13 Identities = 63/70 (90%) Strand = Plus / Plus Query: 108 gaagatttaccacagtacatagacaaatataagttaaatcctgcatctgtatagtatgat 167 |||||||||||||| ||| |||||| |||| || |||| |||| |||||||||||||||| Sbjct: 86 gaagatttaccacaatacgtagacatatattagctaaaccctgaatctgtatagtatgat 145 Query: 168 caacatcaca 177 |||||||||| Sbjct: 146 caacatcaca 155
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 77.8 bits (39), Expect = 1e-11 Identities = 67/75 (89%), Gaps = 1/75 (1%) Strand = Plus / Plus Query: 124 acatagacaaatataagttaaatcctgcatctgtatagtatgatcaacatcacaaggagg 183 ||||||| ||||||| | ||||||||||||||||||||||||| | |||||| | ||||| Sbjct: 35864926 acatagataaatataggctaaatcctgcatctgtatagtatgaccgacatca-atggagg 35864984 Query: 184 agaaactgaacaggt 198 ||||| ||||||||| Sbjct: 35864985 agaaattgaacaggt 35864999 Score = 42.1 bits (21), Expect = 0.63 Identities = 21/21 (100%) Strand = Plus / Minus Query: 92 agaaataaacagaagtgaaga 112 ||||||||||||||||||||| Sbjct: 7977120 agaaataaacagaagtgaaga 7977100
>dbj|AP003271.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0506B12 Length = 170759 Score = 77.8 bits (39), Expect = 1e-11 Identities = 67/75 (89%), Gaps = 1/75 (1%) Strand = Plus / Plus Query: 124 acatagacaaatataagttaaatcctgcatctgtatagtatgatcaacatcacaaggagg 183 ||||||| ||||||| | ||||||||||||||||||||||||| | |||||| | ||||| Sbjct: 129384 acatagataaatataggctaaatcctgcatctgtatagtatgaccgacatca-atggagg 129442 Query: 184 agaaactgaacaggt 198 ||||| ||||||||| Sbjct: 129443 agaaattgaacaggt 129457
>dbj|AK119783.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-173-F04, full insert sequence Length = 1678 Score = 77.8 bits (39), Expect = 1e-11 Identities = 67/75 (89%), Gaps = 1/75 (1%) Strand = Plus / Minus Query: 124 acatagacaaatataagttaaatcctgcatctgtatagtatgatcaacatcacaaggagg 183 ||||||| ||||||| | ||||||||||||||||||||||||| | |||||| | ||||| Sbjct: 1531 acatagataaatataggctaaatcctgcatctgtatagtatgaccgacatca-atggagg 1473 Query: 184 agaaactgaacaggt 198 ||||| ||||||||| Sbjct: 1472 agaaattgaacaggt 1458
>dbj|AK106145.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-207-H02, full insert sequence Length = 1599 Score = 77.8 bits (39), Expect = 1e-11 Identities = 67/75 (89%), Gaps = 1/75 (1%) Strand = Plus / Minus Query: 124 acatagacaaatataagttaaatcctgcatctgtatagtatgatcaacatcacaaggagg 183 ||||||| ||||||| | ||||||||||||||||||||||||| | |||||| | ||||| Sbjct: 1492 acatagataaatataggctaaatcctgcatctgtatagtatgaccgacatca-atggagg 1434 Query: 184 agaaactgaacaggt 198 ||||| ||||||||| Sbjct: 1433 agaaattgaacaggt 1419
>dbj|AK098958.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013063N02, full insert sequence Length = 1656 Score = 77.8 bits (39), Expect = 1e-11 Identities = 67/75 (89%), Gaps = 1/75 (1%) Strand = Plus / Minus Query: 124 acatagacaaatataagttaaatcctgcatctgtatagtatgatcaacatcacaaggagg 183 ||||||| ||||||| | ||||||||||||||||||||||||| | |||||| | ||||| Sbjct: 1532 acatagataaatataggctaaatcctgcatctgtatagtatgaccgacatca-atggagg 1474 Query: 184 agaaactgaacaggt 198 ||||| ||||||||| Sbjct: 1473 agaaattgaacaggt 1459
>dbj|AK066629.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013071A10, full insert sequence Length = 1745 Score = 77.8 bits (39), Expect = 1e-11 Identities = 67/75 (89%), Gaps = 1/75 (1%) Strand = Plus / Minus Query: 124 acatagacaaatataagttaaatcctgcatctgtatagtatgatcaacatcacaaggagg 183 ||||||| ||||||| | ||||||||||||||||||||||||| | |||||| | ||||| Sbjct: 1533 acatagataaatataggctaaatcctgcatctgtatagtatgaccgacatca-atggagg 1475 Query: 184 agaaactgaacaggt 198 ||||| ||||||||| Sbjct: 1474 agaaattgaacaggt 1460
>dbj|AK061720.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-A01, full insert sequence Length = 1599 Score = 77.8 bits (39), Expect = 1e-11 Identities = 67/75 (89%), Gaps = 1/75 (1%) Strand = Plus / Minus Query: 124 acatagacaaatataagttaaatcctgcatctgtatagtatgatcaacatcacaaggagg 183 ||||||| ||||||| | ||||||||||||||||||||||||| | |||||| | ||||| Sbjct: 1492 acatagataaatataggctaaatcctgcatctgtatagtatgaccgacatca-atggagg 1434 Query: 184 agaaactgaacaggt 198 ||||| ||||||||| Sbjct: 1433 agaaattgaacaggt 1419
>gb|AC068205.25| Homo sapiens chromosome 11, clone RP11-472I20, complete sequence Length = 205069 Score = 48.1 bits (24), Expect = 0.010 Identities = 24/24 (100%) Strand = Plus / Minus Query: 91 aagaaataaacagaagtgaagatt 114 |||||||||||||||||||||||| Sbjct: 102170 aagaaataaacagaagtgaagatt 102147
>ref|XM_847794.1| PREDICTED: Canis familiaris similar to lamina-associated polypeptide 1B (LOC610317), mRNA Length = 2233 Score = 42.1 bits (21), Expect = 0.63 Identities = 21/21 (100%) Strand = Plus / Plus Query: 177 aaggaggagaaactgaacagg 197 ||||||||||||||||||||| Sbjct: 989 aaggaggagaaactgaacagg 1009
>gb|AC148447.3| Pan troglodytes chromosome X clone RP43-041A20 map human ortholog p11.3, complete sequence Length = 210474 Score = 42.1 bits (21), Expect = 0.63 Identities = 21/21 (100%) Strand = Plus / Minus Query: 91 aagaaataaacagaagtgaag 111 ||||||||||||||||||||| Sbjct: 174420 aagaaataaacagaagtgaag 174400
>emb|AL034370.1|HSA218J18 Human DNA sequence from clone RP6-218J18 on chromosome Xp11.3-11.4 Contains the NDP gene for norrie disease (pseudoglioma), a RNA-binding region (RNP1, RRM) containing 2 (RNPC2) pseudogene, a novel gene and a CpG island, complete sequence Length = 119945 Score = 42.1 bits (21), Expect = 0.63 Identities = 21/21 (100%) Strand = Plus / Minus Query: 91 aagaaataaacagaagtgaag 111 ||||||||||||||||||||| Sbjct: 103568 aagaaataaacagaagtgaag 103548
>gb|AC163734.3| Pan troglodytes BAC clone CH251-558I15 from chromosome unknown, complete sequence Length = 157458 Score = 42.1 bits (21), Expect = 0.63 Identities = 21/21 (100%) Strand = Plus / Minus Query: 91 aagaaataaacagaagtgaag 111 ||||||||||||||||||||| Sbjct: 16864 aagaaataaacagaagtgaag 16844
>dbj|AP003196.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1008C01 Length = 144141 Score = 42.1 bits (21), Expect = 0.63 Identities = 21/21 (100%) Strand = Plus / Minus Query: 92 agaaataaacagaagtgaaga 112 ||||||||||||||||||||| Sbjct: 83432 agaaataaacagaagtgaaga 83412
>ref|XM_482248.1| Oryza sativa (japonica cultivar-group), mRNA Length = 770 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 169 aacatcacaaggaggagaaa 188 |||||||||||||||||||| Sbjct: 93 aacatcacaaggaggagaaa 112
>gb|AC159321.3| Mus musculus BAC clone RP23-18G14 from chromosome 6, complete sequence Length = 202584 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 85 agctaaaagaaataaacaga 104 |||||||||||||||||||| Sbjct: 189271 agctaaaagaaataaacaga 189252
>gb|AC103934.10| Mus musculus chromosome 6, clone RP23-287O14, complete sequence Length = 208817 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 85 agctaaaagaaataaacaga 104 |||||||||||||||||||| Sbjct: 163153 agctaaaagaaataaacaga 163134
>gb|AC125399.3| Mus musculus BAC clone RP24-245C15 from chromosome 14, complete sequence Length = 195425 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 89 aaaagaaataaacagaagtg 108 |||||||||||||||||||| Sbjct: 127337 aaaagaaataaacagaagtg 127318
>emb|AL583808.6| Human DNA sequence from clone RP11-262K1 on chromosome 1 Contains a novel gene, complete sequence Length = 174642 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 121 agtacatagacaaatataag 140 |||||||||||||||||||| Sbjct: 41904 agtacatagacaaatataag 41885
>emb|AL117350.12|HSJ803J11 Human DNA sequence from clone RP4-803J11 on chromosome 1 Contains the 3' end of the RAB4A gene for RAB4A, member RAS oncogene family, a novel gene, a novel gene (LOC126731) and a CpG island, complete sequence Length = 106441 Score = 40.1 bits (20), Expect = 2.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 74 gcaacatttgaagctaaaagaaat 97 |||||||| ||||||||||||||| Sbjct: 16800 gcaacattggaagctaaaagaaat 16823
>emb|X95989.1|DASRASECE D.ambivalens ORF1 and ORF2, sra & secE genes Length = 2331 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 97 taaacagaagtgaagattta 116 |||||||||||||||||||| Sbjct: 506 taaacagaagtgaagattta 525
>gb|AC026367.14| Homo sapiens 12 BAC RP11-131L12 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 181445 Score = 40.1 bits (20), Expect = 2.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 73 ggcaacatttgaagctaaaagaaataaa 100 ||||||||| ||||||||||| |||||| Sbjct: 160076 ggcaacattggaagctaaaagcaataaa 160049
>emb|BX248115.12| Zebrafish DNA sequence from clone CH211-208K15 in linkage group 16, complete sequence Length = 211852 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 119 acagtacatagacaaatata 138 |||||||||||||||||||| Sbjct: 197600 acagtacatagacaaatata 197581
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 169 aacatcacaaggaggagaaa 188 |||||||||||||||||||| Sbjct: 19010987 aacatcacaaggaggagaaa 19010968 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 92 agaaataaacagaagtgaa 110 ||||||||||||||||||| Sbjct: 22325326 agaaataaacagaagtgaa 22325344
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 92 agaaataaacagaagtgaag 111 |||||||||||||||||||| Sbjct: 18674023 agaaataaacagaagtgaag 18674042
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 2.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 116 accacagtacatagacaaatataa 139 |||||||||||||| ||||||||| Sbjct: 8519472 accacagtacatagtcaaatataa 8519495
>dbj|AP004006.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1197_D06 Length = 103844 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 92 agaaataaacagaagtgaag 111 |||||||||||||||||||| Sbjct: 99077 agaaataaacagaagtgaag 99096
>dbj|AP003947.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1198_B10 Length = 119768 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 169 aacatcacaaggaggagaaa 188 |||||||||||||||||||| Sbjct: 95907 aacatcacaaggaggagaaa 95888
>dbj|AP005177.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0055I24 Length = 155872 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 92 agaaataaacagaagtgaag 111 |||||||||||||||||||| Sbjct: 6311 agaaataaacagaagtgaag 6330
>dbj|AP004018.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1113_G05 Length = 131445 Score = 40.1 bits (20), Expect = 2.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 116 accacagtacatagacaaatataa 139 |||||||||||||| ||||||||| Sbjct: 68742 accacagtacatagtcaaatataa 68765
>dbj|AP003904.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1051_A08 Length = 137583 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 169 aacatcacaaggaggagaaa 188 |||||||||||||||||||| Sbjct: 35774 aacatcacaaggaggagaaa 35755
>dbj|AK072742.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023139O15, full insert sequence Length = 768 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 169 aacatcacaaggaggagaaa 188 |||||||||||||||||||| Sbjct: 91 aacatcacaaggaggagaaa 110
>dbj|AK065073.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001K10, full insert sequence Length = 3470 Score = 40.1 bits (20), Expect = 2.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 116 accacagtacatagacaaatataa 139 |||||||||||||| ||||||||| Sbjct: 1868 accacagtacatagtcaaatataa 1891
>ref|NM_125062.1| Arabidopsis thaliana ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein-tyrosine kinase AT5G56790 mRNA, complete cds Length = 2820 Score = 38.2 bits (19), Expect = 9.9 Identities = 22/23 (95%) Strand = Plus / Minus Query: 83 gaagctaaaagaaataaacagaa 105 |||||||||||||||||| |||| Sbjct: 503 gaagctaaaagaaataaatagaa 481
>gb|AC147664.2| Pan troglodytes BAC clone CH251-238C14 from Y, complete sequence Length = 159873 Score = 38.2 bits (19), Expect = 9.9 Identities = 22/23 (95%) Strand = Plus / Minus Query: 88 taaaagaaataaacagaagtgaa 110 |||||||||||||||||| |||| Sbjct: 59034 taaaagaaataaacagaaatgaa 59012
>gb|AC140201.3| Mus musculus BAC clone RP23-267F15 from chromosome 16, complete sequence Length = 166079 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 92 agaaataaacagaagtgaa 110 ||||||||||||||||||| Sbjct: 97778 agaaataaacagaagtgaa 97796
>gb|AC147474.2| Mus musculus BAC clone RP23-425D11 from chromosome 19, complete sequence Length = 195273 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 101 cagaagtgaagatttacca 119 ||||||||||||||||||| Sbjct: 14059 cagaagtgaagatttacca 14041
>gb|AC132371.2| Mus musculus BAC clone RP23-477D20 from chromosome 5, complete sequence Length = 193291 Score = 38.2 bits (19), Expect = 9.9 Identities = 22/23 (95%) Strand = Plus / Minus Query: 92 agaaataaacagaagtgaagatt 114 ||||||||| ||||||||||||| Sbjct: 141843 agaaataaaaagaagtgaagatt 141821
>ref|XM_987699.1| PREDICTED: Mus musculus transient receptor potential cation channel, subfamily M, member 6 (Trpm6), mRNA Length = 5982 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 174 cacaaggaggagaaactga 192 ||||||||||||||||||| Sbjct: 4669 cacaaggaggagaaactga 4687
>gb|BC022929.1| Mus musculus transient receptor potential cation channel, subfamily M, member 6, mRNA (cDNA clone IMAGE:3986429), partial cds Length = 2195 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 174 cacaaggaggagaaactga 192 ||||||||||||||||||| Sbjct: 1886 cacaaggaggagaaactga 1904
>gb|AC006338.6| Homo sapiens BAC clone RP11-539D10 from Y, complete sequence Length = 175990 Score = 38.2 bits (19), Expect = 9.9 Identities = 22/23 (95%) Strand = Plus / Minus Query: 88 taaaagaaataaacagaagtgaa 110 |||||||||||||||||| |||| Sbjct: 162864 taaaagaaataaacagaaatgaa 162842
>gb|AC139939.6| Mus musculus chromosome 1, clone RP23-458O23, complete sequence Length = 175033 Score = 38.2 bits (19), Expect = 9.9 Identities = 22/23 (95%) Strand = Plus / Plus Query: 140 gttaaatcctgcatctgtatagt 162 |||||||||| |||||||||||| Sbjct: 91237 gttaaatccttcatctgtatagt 91259
>gb|AC008020.37| Mus musculus strain 129S6/SvEvTac chromosome 16 clone rp21-598k13, complete sequence Length = 184044 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 92 agaaataaacagaagtgaa 110 ||||||||||||||||||| Sbjct: 125565 agaaataaacagaagtgaa 125583
>gb|AC146243.2| Pan troglodytes BAC clone CH251-166E5 from Y, complete sequence Length = 161714 Score = 38.2 bits (19), Expect = 9.9 Identities = 22/23 (95%) Strand = Plus / Minus Query: 88 taaaagaaataaacagaagtgaa 110 |||||||||||||||||| |||| Sbjct: 62798 taaaagaaataaacagaaatgaa 62776
>gb|AC147361.1| Pan troglodytes BAC clone CH251-528H6 from Y, complete sequence Length = 169760 Score = 38.2 bits (19), Expect = 9.9 Identities = 22/23 (95%) Strand = Plus / Plus Query: 88 taaaagaaataaacagaagtgaa 110 |||||||||||||||||| |||| Sbjct: 101273 taaaagaaataaacagaaatgaa 101295
>gb|AC147114.2| Pan troglodytes BAC clone CH251-548O14 from Y, complete sequence Length = 229006 Score = 38.2 bits (19), Expect = 9.9 Identities = 22/23 (95%) Strand = Plus / Plus Query: 88 taaaagaaataaacagaagtgaa 110 |||||||||||||||||| |||| Sbjct: 126370 taaaagaaataaacagaaatgaa 126392
>gb|AC140458.3| Mus musculus BAC clone RP23-19C24 from chromosome 19, complete sequence Length = 186016 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 174 cacaaggaggagaaactga 192 ||||||||||||||||||| Sbjct: 104435 cacaaggaggagaaactga 104453
>gb|AC134906.3| Mus musculus BAC clone RP23-361K7 from chromosome 19, complete sequence Length = 192484 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 101 cagaagtgaagatttacca 119 ||||||||||||||||||| Sbjct: 133026 cagaagtgaagatttacca 133008
>gb|AC122500.5| Mus musculus BAC clone RP24-409J4 from chromosome 8, complete sequence Length = 175361 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 94 aaataaacagaagtgaaga 112 ||||||||||||||||||| Sbjct: 118569 aaataaacagaagtgaaga 118587
>gb|AC116594.4| Mus musculus BAC clone RP24-127F20 from 19, complete sequence Length = 201360 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 174 cacaaggaggagaaactga 192 ||||||||||||||||||| Sbjct: 188733 cacaaggaggagaaactga 188715
>gb|U55372.2| Caenorhabditis elegans cosmid C02G6, complete sequence Length = 13698 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 132 aaatataagttaaatcctg 150 ||||||||||||||||||| Sbjct: 6780 aaatataagttaaatcctg 6762
>gb|AC079817.41| Mus musculus strain C57BL/6J clone rp23-247i11 map 16, complete sequence Length = 197346 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 92 agaaataaacagaagtgaa 110 ||||||||||||||||||| Sbjct: 164062 agaaataaacagaagtgaa 164080 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 92 agaaataaacagaagtgaa 110 ||||||||||||||||||| Sbjct: 18806 agaaataaacagaagtgaa 18824
>gb|AC144430.14| Medicago truncatula clone mth2-16j2, complete sequence Length = 125368 Score = 38.2 bits (19), Expect = 9.9 Identities = 22/23 (95%) Strand = Plus / Plus Query: 166 atcaacatcacaaggaggagaaa 188 ||||||||||||| ||||||||| Sbjct: 16491 atcaacatcacaaagaggagaaa 16513
>gb|AC142332.1| Pan troglodytes BAC clone RP43-31L22 from Y, complete sequence Length = 153093 Score = 38.2 bits (19), Expect = 9.9 Identities = 22/23 (95%) Strand = Plus / Plus Query: 88 taaaagaaataaacagaagtgaa 110 |||||||||||||||||| |||| Sbjct: 99097 taaaagaaataaacagaaatgaa 99119
>emb|AL162504.12| Human DNA sequence from clone RP11-199O14 on chromosome 20 Contains part of a novel gene, complete sequence Length = 105757 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 94 aaataaacagaagtgaaga 112 ||||||||||||||||||| Sbjct: 17100 aaataaacagaagtgaaga 17082
>ref|NG_004051.1| Mus musculus immunoglobulin lambda chain complex (Igl) on chromosome 16 Length = 234987 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 92 agaaataaacagaagtgaa 110 ||||||||||||||||||| Sbjct: 108605 agaaataaacagaagtgaa 108587
>gb|AC108449.5| Homo sapiens chromosome 8, clone CTD-2647L4, complete sequence Length = 160380 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 89 aaaagaaataaacagaagt 107 ||||||||||||||||||| Sbjct: 31978 aaaagaaataaacagaagt 31960
>emb|AL035689.26|HS187J11 Human DNA sequence from clone RP1-187J11 on chromosome 6q11.1-22.33 Contains the 3' part of the gene for endoplasmic reticulum associated protein 140 kDa (ERAP140) (similar to nucleolar protein C7B), the gene for a novel protein similar to protein kinase C inhibitors, the gene for MDS024 protein and two putative CpG islands, complete sequence Length = 144364 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 84 aagctaaaagaaataaaca 102 ||||||||||||||||||| Sbjct: 81413 aagctaaaagaaataaaca 81431
>gb|AY135644.1| Mus musculus transient receptor potential cation channel 6/channel-kinase 2 mRNA, complete cds Length = 6520 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 174 cacaaggaggagaaactga 192 ||||||||||||||||||| Sbjct: 4705 cacaaggaggagaaactga 4723
>gb|AY056259.1| Arabidopsis thaliana unknown protein (At5g56790) mRNA, complete cds Length = 2837 Score = 38.2 bits (19), Expect = 9.9 Identities = 22/23 (95%) Strand = Plus / Minus Query: 83 gaagctaaaagaaataaacagaa 105 |||||||||||||||||| |||| Sbjct: 503 gaagctaaaagaaataaatagaa 481
>emb|AL049607.1|ATF11C18 Arabidopsis thaliana DNA chromosome 4, BAC clone F11C18 (ESSA project) Length = 111517 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 32 agtttgcaacacaagcaat 50 ||||||||||||||||||| Sbjct: 84287 agtttgcaacacaagcaat 84269
>emb|AL021636.3|ATF10N7 Arabidopsis thaliana DNA chromosome 4, BAC clone F10N7 (ESSA project) Length = 96585 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 32 agtttgcaacacaagcaat 50 ||||||||||||||||||| Sbjct: 81568 agtttgcaacacaagcaat 81586
>emb|AJ001000.1|PPTRP1877 Pichia pastoris TRP1 and IPP1 genes Length = 2326 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 176 caaggaggagaaactgaac 194 ||||||||||||||||||| Sbjct: 1785 caaggaggagaaactgaac 1767
>emb|CR391929.9| Zebrafish DNA sequence from clone DKEYP-86B5, complete sequence Length = 223724 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 84 aagctaaaagaaataaaca 102 ||||||||||||||||||| Sbjct: 223273 aagctaaaagaaataaaca 223255
>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence Length = 23952694 Score = 38.2 bits (19), Expect = 9.9 Identities = 22/23 (95%) Strand = Plus / Minus Query: 88 taaaagaaataaacagaagtgaa 110 |||||||||||||||||| |||| Sbjct: 11431599 taaaagaaataaacagaaatgaa 11431577 Score = 38.2 bits (19), Expect = 9.9 Identities = 22/23 (95%) Strand = Plus / Plus Query: 88 taaaagaaataaacagaagtgaa 110 |||||||||||||||||| |||| Sbjct: 11120455 taaaagaaataaacagaaatgaa 11120477 Score = 38.2 bits (19), Expect = 9.9 Identities = 22/23 (95%) Strand = Plus / Minus Query: 88 taaaagaaataaacagaagtgaa 110 |||||||||||||||||| |||| Sbjct: 3533096 taaaagaaataaacagaaatgaa 3533074 Score = 38.2 bits (19), Expect = 9.9 Identities = 22/23 (95%) Strand = Plus / Plus Query: 88 taaaagaaataaacagaagtgaa 110 |||||||||||||||||| |||| Sbjct: 3152160 taaaagaaataaacagaaatgaa 3152182
>emb|BX682552.9| Zebrafish DNA sequence from clone DKEY-120C6 in linkage group 3, complete sequence Length = 228044 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 84 aagctaaaagaaataaaca 102 ||||||||||||||||||| Sbjct: 189726 aagctaaaagaaataaaca 189708
>ref|NM_153417.1| Mus musculus transient receptor potential cation channel, subfamily M, member 6 (Trpm6), mRNA Length = 6520 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 174 cacaaggaggagaaactga 192 ||||||||||||||||||| Sbjct: 4705 cacaaggaggagaaactga 4723
>dbj|AK092531.1| Homo sapiens cDNA FLJ35212 fis, clone PROST1000136 Length = 2031 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 52 caaattacccctggtctca 70 ||||||||||||||||||| Sbjct: 565 caaattacccctggtctca 583
>gb|AC182430.2| Pan troglodytes BAC clone CH251-398I16 from chromosome 4, complete sequence Length = 145600 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 77 acatttgaagctaaaagaa 95 ||||||||||||||||||| Sbjct: 30438 acatttgaagctaaaagaa 30456
>gb|AC000385.2| Homo sapiens chromosome 11 clone PAC pDJ392a17, complete sequence Length = 164155 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 52 caaattacccctggtctca 70 ||||||||||||||||||| Sbjct: 11653 caaattacccctggtctca 11671
>gb|AC022039.7| Homo sapiens chromosome 8, clone RP11-3G21, complete sequence Length = 176815 Score = 38.2 bits (19), Expect = 9.9 Identities = 22/23 (95%) Strand = Plus / Plus Query: 78 catttgaagctaaaagaaataaa 100 |||||||||||||| |||||||| Sbjct: 112231 catttgaagctaaaggaaataaa 112253
>gb|AC092766.4| Homo sapiens chromosome 8, clone RP11-483N3, complete sequence Length = 155847 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 52 caaattacccctggtctca 70 ||||||||||||||||||| Sbjct: 49549 caaattacccctggtctca 49531
>gb|AC010088.4| Homo sapiens BAC clone RP11-289L7 from Y, complete sequence Length = 107687 Score = 38.2 bits (19), Expect = 9.9 Identities = 22/23 (95%) Strand = Plus / Plus Query: 88 taaaagaaataaacagaagtgaa 110 |||||||||||||||||| |||| Sbjct: 3770 taaaagaaataaacagaaatgaa 3792
>gb|BC050148.1| Mus musculus transient receptor potential cation channel, subfamily M, member 6, mRNA (cDNA clone IMAGE:30029066), containing frame-shift errors Length = 2018 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 174 cacaaggaggagaaactga 192 ||||||||||||||||||| Sbjct: 186 cacaaggaggagaaactga 204
>gb|AC007472.6|AC007472 Drosophila melanogaster, chromosome 2R, region 49E-49F, BAC clone BACR30D19, complete sequence Length = 163052 Score = 38.2 bits (19), Expect = 9.9 Identities = 22/23 (95%) Strand = Plus / Minus Query: 84 aagctaaaagaaataaacagaag 106 ||||| ||||||||||||||||| Sbjct: 150747 aagctcaaagaaataaacagaag 150725
>gb|AC093755.2| Homo sapiens BAC clone RP11-55C6 from 4, complete sequence Length = 146673 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 77 acatttgaagctaaaagaa 95 ||||||||||||||||||| Sbjct: 122638 acatttgaagctaaaagaa 122656
>gb|AC068587.16| Homo sapiens chromosome 8, clone RP11-303G3, complete sequence Length = 174171 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 52 caaattacccctggtctca 70 ||||||||||||||||||| Sbjct: 34395 caaattacccctggtctca 34413
>gb|AC105050.2| Homo sapiens BAC clone RP11-106G23 from 2, complete sequence Length = 104017 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 1 ggcaaaatgacagcagtga 19 ||||||||||||||||||| Sbjct: 27491 ggcaaaatgacagcagtga 27473
>gb|AC025735.4|AC025735 Homo sapiens BAC clone RP11-214M24 from Y, complete sequence Length = 85472 Score = 38.2 bits (19), Expect = 9.9 Identities = 22/23 (95%) Strand = Plus / Plus Query: 88 taaaagaaataaacagaagtgaa 110 |||||||||||||||||| |||| Sbjct: 14483 taaaagaaataaacagaaatgaa 14505
>gb|AC079831.24| Mus musculus strain C57BL/6J chromosome 16 clone rp23-374p12, complete sequence Length = 147412 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 92 agaaataaacagaagtgaa 110 ||||||||||||||||||| Sbjct: 22708 agaaataaacagaagtgaa 22690
>ref|NG_004755.1| Homo sapiens chromosome Y palindromes P1, P2, P3 and inverted repeat IR2 (P1-P2-P3-IR2@) on chromosome Y Length = 4538292 Score = 38.2 bits (19), Expect = 9.9 Identities = 22/23 (95%) Strand = Plus / Minus Query: 88 taaaagaaataaacagaagtgaa 110 |||||||||||||||||| |||| Sbjct: 3193544 taaaagaaataaacagaaatgaa 3193522 Score = 38.2 bits (19), Expect = 9.9 Identities = 22/23 (95%) Strand = Plus / Plus Query: 88 taaaagaaataaacagaagtgaa 110 |||||||||||||||||| |||| Sbjct: 2854788 taaaagaaataaacagaaatgaa 2854810 Score = 38.2 bits (19), Expect = 9.9 Identities = 22/23 (95%) Strand = Plus / Plus Query: 88 taaaagaaataaacagaagtgaa 110 |||||||||||||||||| |||| Sbjct: 1221044 taaaagaaataaacagaaatgaa 1221066
>ref|XM_219747.3| PREDICTED: Rattus norvegicus transient receptor potential cation channel, subfamily M, member 6 (predicted) (Trpm6_predicted), mRNA Length = 6882 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 174 cacaaggaggagaaactga 192 ||||||||||||||||||| Sbjct: 5074 cacaaggaggagaaactga 5092
>gb|AC010183.6| Homo sapiens 12 BAC RP11-100F15 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 175504 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 94 aaataaacagaagtgaaga 112 ||||||||||||||||||| Sbjct: 166271 aaataaacagaagtgaaga 166289
>emb|BX649608.7| Zebrafish DNA sequence from clone CH211-117L17 in linkage group 18, complete sequence Length = 169649 Score = 38.2 bits (19), Expect = 9.9 Identities = 25/27 (92%) Strand = Plus / Plus Query: 89 aaaagaaataaacagaagtgaagattt 115 |||||||||||||| ||||| |||||| Sbjct: 83479 aaaagaaataaacacaagtgcagattt 83505
>emb|BX681418.6| Mouse DNA sequence from clone RP23-191O20 on chromosome X, complete sequence Length = 206167 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 86 gctaaaagaaataaacaga 104 ||||||||||||||||||| Sbjct: 18189 gctaaaagaaataaacaga 18171
>dbj|AB013392.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MIK19 Length = 84129 Score = 38.2 bits (19), Expect = 9.9 Identities = 22/23 (95%) Strand = Plus / Minus Query: 83 gaagctaaaagaaataaacagaa 105 |||||||||||||||||| |||| Sbjct: 66646 gaagctaaaagaaataaatagaa 66624
>dbj|AP005483.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:B1144B06 Length = 133689 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 92 agaaataaacagaagtgaa 110 ||||||||||||||||||| Sbjct: 22309 agaaataaacagaagtgaa 22327
>dbj|AP004662.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0048G02 Length = 155542 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 92 agaaataaacagaagtgaa 110 ||||||||||||||||||| Sbjct: 141702 agaaataaacagaagtgaa 141720
>emb|AL669843.4| Human DNA sequence from clone XXbac-33F23 on chromosome 6, complete sequence Length = 183384 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 1 ggcaaaatgacagcagtga 19 ||||||||||||||||||| Sbjct: 140531 ggcaaaatgacagcagtga 140513
>gb|AE003820.3| Drosophila melanogaster chromosome 2R, section 30 of 73 of the complete sequence Length = 263912 Score = 38.2 bits (19), Expect = 9.9 Identities = 22/23 (95%) Strand = Plus / Minus Query: 84 aagctaaaagaaataaacagaag 106 ||||| ||||||||||||||||| Sbjct: 219959 aagctcaaagaaataaacagaag 219937
>gb|AC102099.14| Mus musculus chromosome 5, clone RP23-52A2, complete sequence Length = 235239 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 77 acatttgaagctaaaagaa 95 ||||||||||||||||||| Sbjct: 144419 acatttgaagctaaaagaa 144437
>emb|AL161580.2|ATCHRIV76 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 76 Length = 165698 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 32 agtttgcaacacaagcaat 50 ||||||||||||||||||| Sbjct: 32385 agtttgcaacacaagcaat 32367
>gb|AC156457.1| Loxodonta africana, clone Loxodonta africana-6767875E10, complete sequence Length = 42718 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 87 ctaaaagaaataaacagaa 105 ||||||||||||||||||| Sbjct: 19014 ctaaaagaaataaacagaa 18996
>emb|CT027681.7| Mouse DNA sequence from clone RP24-330H24 on chromosome 16, complete sequence Length = 190475 Score = 38.2 bits (19), Expect = 9.9 Identities = 22/23 (95%) Strand = Plus / Minus Query: 82 tgaagctaaaagaaataaacaga 104 ||||||||||||| ||||||||| Sbjct: 106595 tgaagctaaaagagataaacaga 106573
>dbj|AB231867.1| Nematostella vectensis gene for zinc finger protein Nv-ZicA, complete cds Length = 186420 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 130 acaaatataagttaaatcc 148 ||||||||||||||||||| Sbjct: 39 acaaatataagttaaatcc 57
>dbj|AB231865.1| Spisula solidissima gene for zinc finger protein Sso-Zic, complete cds Length = 209833 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 32 agtttgcaacacaagcaat 50 ||||||||||||||||||| Sbjct: 189448 agtttgcaacacaagcaat 189466
>gb|L08677.1|HIV350138A Human immunodeficiency virus type 1 (clone: PR8) proviral pol gene exon Length = 654 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 103 gaagtgaagatttaccaca 121 ||||||||||||||||||| Sbjct: 446 gaagtgaagatttaccaca 464 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,439,806 Number of Sequences: 3902068 Number of extensions: 2439806 Number of successful extensions: 182412 Number of sequences better than 10.0: 97 Number of HSP's better than 10.0 without gapping: 100 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 181685 Number of HSP's gapped (non-prelim): 727 length of query: 199 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 177 effective length of database: 17,147,199,772 effective search space: 3035054359644 effective search space used: 3035054359644 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)
