ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet117g08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_418704.1| PREDICTED: Gallus gallus similar to TWIST neigh... 40 3.7
2gb|AF423072.1|AF423072 Homo sapiens signal transducer and activa... 40 3.7
3gb|AC067945.4| Homo sapiens BAC clone RP11-629B4 from 2, complet... 40 3.7

>ref|XM_418704.1| PREDICTED: Gallus gallus similar to TWIST neighbor (LOC420603),
           mRNA
          Length = 1054

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 211 ggatgaagccctggtcgtcg 230
           ||||||||||||||||||||
Sbjct: 324 ggatgaagccctggtcgtcg 305



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>gb|AF423072.1|AF423072 Homo sapiens signal transducer and activator of transcription 4
            (STAT4) gene, partial cds
          Length = 52796

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 5    acagacatatttatatgcag 24
            ||||||||||||||||||||
Sbjct: 9474 acagacatatttatatgcag 9455



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>gb|AC067945.4| Homo sapiens BAC clone RP11-629B4 from 2, complete sequence
          Length = 162471

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 5      acagacatatttatatgcag 24
              ||||||||||||||||||||
Sbjct: 145661 acagacatatttatatgcag 145680


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,524,580
Number of Sequences: 3902068
Number of extensions: 1524580
Number of successful extensions: 38201
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 38198
Number of HSP's gapped (non-prelim): 3
length of query: 282
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 260
effective length of database: 17,147,199,772
effective search space: 4458271940720
effective search space used: 4458271940720
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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