ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet117g03 |
|---|---|
| Clone Library Name | barley_pub |
>RUBR_ANAVT (Q9XBL8) Rubredoxin (Rd)| Length = 111 Score = 35.4 bits (80), Expect = 0.035 Identities = 16/28 (57%), Positives = 21/28 (75%) Frame = -2 Query: 337 LTSGQKTLLIYGSLLVGFAFFLSGYFLQ 254 LT QK +LI+G+L +GF FF+S Y LQ Sbjct: 84 LTPAQKNILIFGALALGFLFFISLYGLQ 111
>RUBR_ANASP (Q9WWN1) Rubredoxin (Rd)| Length = 111 Score = 35.4 bits (80), Expect = 0.035 Identities = 16/28 (57%), Positives = 21/28 (75%) Frame = -2 Query: 337 LTSGQKTLLIYGSLLVGFAFFLSGYFLQ 254 LT QK +LI+G+L +GF FF+S Y LQ Sbjct: 84 LTPAQKNILIFGALALGFLFFISLYGLQ 111
>RUBR_SYNY3 (P73068) Rubredoxin (Rd)| Length = 115 Score = 32.3 bits (72), Expect = 0.30 Identities = 15/25 (60%), Positives = 19/25 (76%) Frame = -2 Query: 337 LTSGQKTLLIYGSLLVGFAFFLSGY 263 ++ G+K LLI+GSL V F FFLS Y Sbjct: 88 MSGGKKNLLIFGSLFVIFLFFLSLY 112
>VE4_HPV2A (P25483) Probable protein E4| Length = 132 Score = 28.9 bits (63), Expect = 3.3 Identities = 14/33 (42%), Positives = 18/33 (54%) Frame = -3 Query: 336 SPPARRRYSSTEASLSGSPSSFPGTSCNEYRAR 238 +PP R+R AS+S S SS PG + E R Sbjct: 70 APPRRQRVRRPSASVSSSDSSIPGPTLRERSER 102
>IF1C_MESCR (Q94KR8) Translation initiation factor IF-1, chloroplast precursor| Length = 156 Score = 28.5 bits (62), Expect = 4.3 Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 1/57 (1%) Frame = -3 Query: 336 SPPARRRYSSTEASLSGSPSSFPGTSCNEYRARHHPLIHSRRLLAIS-EEEKLSKAV 169 SPP R +S S SPS P SCN+ + ++ PL+H + IS ++EK ++++ Sbjct: 10 SPPCSR------SSKSPSPSPSPSLSCNQ-QQQYKPLLHHQWPPQISLKKEKSNESI 59
>MAK_HUMAN (P20794) Serine/threonine-protein kinase MAK (EC 2.7.11.22) (Male| germ cell-associated kinase) Length = 623 Score = 28.5 bits (62), Expect = 4.3 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 7/43 (16%) Frame = +1 Query: 1 LARELHPQGNYSQHLKTN---VPFPLC----YTSPLSLWALGS 108 LAREL Q Y+ ++ T P L Y+SP+ +WA+GS Sbjct: 146 LARELRSQPPYTDYVSTRWYRAPEVLLRSSVYSSPIDVWAVGS 188
>MAK_RAT (P20793) Serine/threonine-protein kinase MAK (EC 2.7.11.22) (Male| germ cell-associated kinase) Length = 622 Score = 28.5 bits (62), Expect = 4.3 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 7/43 (16%) Frame = +1 Query: 1 LARELHPQGNYSQHLKTN---VPFPLC----YTSPLSLWALGS 108 LAREL Q Y+ ++ T P L Y+SP+ +WA+GS Sbjct: 146 LARELRSQPPYTDYVSTRWYRAPEVLLRSSVYSSPIDVWAVGS 188
>MAK_MOUSE (Q04859) Serine/threonine-protein kinase MAK (EC 2.7.11.22) (Male| germ cell-associated kinase) (Protein kinase RCK) Length = 622 Score = 28.5 bits (62), Expect = 4.3 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 7/43 (16%) Frame = +1 Query: 1 LARELHPQGNYSQHLKTN---VPFPLC----YTSPLSLWALGS 108 LAREL Q Y+ ++ T P L Y+SP+ +WA+GS Sbjct: 146 LARELRSQPPYTDYVSTRWYRAPEVLLRSSVYSSPIDVWAVGS 188
>SEM4D_MOUSE (O09126) Semaphorin-4D precursor (Semaphorin J) (Sema J)| (Semaphorin C-like 2) (M-Sema G) Length = 861 Score = 28.1 bits (61), Expect = 5.7 Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 1/71 (1%) Frame = -3 Query: 336 SPPARRRYSSTEASLSGSPSSFPGTSCNEYRARHH-PLIHSRRLLAISEEEKLSKAVTGL 160 SPP ++++ + + P S GTSC + P +HS + + + + ++ + L Sbjct: 681 SPPTPALWATSPRAATLPPKSSSGTSCEPKMVINTVPQLHSEKTVYLKSSD--NRLLMSL 738 Query: 159 ILISTVLNLCV 127 +L VL LC+ Sbjct: 739 LLFIFVLFLCL 749
>LIPA1_PROMP (Q7UZY1) Lipoyl synthase 1 (EC 2.8.1.-) (Lipoic acid synthase 1)| (Lipoate synthase 1) (Lipoyl-acyl-carrier protein synthase 1) (Sulfur insertion protein lipA1) (Lip-syn 1) Length = 297 Score = 28.1 bits (61), Expect = 5.7 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 4/46 (8%) Frame = +1 Query: 1 LARELHPQGNYSQHL----KTNVPFPLCYTSPLSLWALGSRSNRYL 126 L R++ PQGNY + L +T FP YT + LG + + L Sbjct: 174 LYRKVRPQGNYQRTLELLKRTREYFPSVYTKSGFMLGLGEKDDEVL 219
>REC8L_MOUSE (Q8C5S7) Meiotic recombination protein REC8-like 1 (Cohesin Rec8p)| Length = 591 Score = 28.1 bits (61), Expect = 5.7 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%) Frame = +2 Query: 32 IASTSKQMSHFPSAIHR-PSLSGLLVAEAIGIYTH 133 +A K+M P+ + R P+LSG L E +G++TH Sbjct: 375 VAQPPKRMLTSPAELFRTPTLSGWLPPELLGLWTH 409
>EFC1_PANTR (Q8MIB6) ERV-F(c)1 provirus ancestral Env polyprotein precursor| (Envelope polyprotein) (CpzERV-Fc1env envelope protein) [Contains: Surface protein (SU); Transmembrane protein (TM)] Length = 584 Score = 27.7 bits (60), Expect = 7.4 Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 9/43 (20%) Frame = +1 Query: 16 HPQGNYSQHLKT-----NVPFPLCYTSPLSLWA----LGSRSN 117 HP G +S+ + FP CYT+P S W GS SN Sbjct: 280 HPSGVFSEQVPLFRDPLQPQFPFCYTTPNSSWCNQTYSGSLSN 322
>EFC1_HUMAN (P60507) HERV-F(c)1_Xq21.33 provirus ancestral Env polyprotein| precursor (Envelope polyprotein) (Fc1env) (HERV-Fc1env) [Contains: Surface protein (SU); Transmembrane protein (TM)] Length = 584 Score = 27.7 bits (60), Expect = 7.4 Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 9/43 (20%) Frame = +1 Query: 16 HPQGNYSQHLKT-----NVPFPLCYTSPLSLWA----LGSRSN 117 HP G +S+ + FP CYT+P S W GS SN Sbjct: 280 HPSGVFSEQVPLFRDPLQPQFPFCYTTPNSSWCNQTYSGSLSN 322
>YANB_SCHPO (Q10076) Hypothetical zinc finger protein C3H1.11 in chromosome I| Length = 582 Score = 27.3 bits (59), Expect = 9.7 Identities = 12/42 (28%), Positives = 18/42 (42%) Frame = -3 Query: 285 SPSSFPGTSCNEYRARHHPLIHSRRLLAISEEEKLSKAVTGL 160 S S P SC EY HP H+ + + ++ V+ L Sbjct: 31 SSSPLPSNSCREYSLPSHPSTHNSSVAYVDSQDNKPPLVSTL 72
>Y786_CORGL (Q8NS93) UPF0182 protein Cgl0786/cg0896| Length = 985 Score = 27.3 bits (59), Expect = 9.7 Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 1/33 (3%) Frame = -2 Query: 316 LLIYGSLLVGFAFFLSGYFLQ*V-PSEASSFDS 221 L + +L+ GF +L+GYF+ + P E S+FD+ Sbjct: 65 LFVIFALIAGFVTWLAGYFVTKLRPDEMSAFDT 97
>YHG3_YEAST (P38756) Protein YHR003C| Length = 429 Score = 27.3 bits (59), Expect = 9.7 Identities = 20/66 (30%), Positives = 29/66 (43%) Frame = +2 Query: 5 PGNCIHKEIIASTSKQMSHFPSAIHRPSLSGLLVAEAIGIYTHKFSTVLIKINPVTALLS 184 P +C H+ I A + + H P P + GL +A I K S +K N V L Sbjct: 260 PIDCEHRAINAVRDEALRHLPELGTMPGIFGLSIATWI---LTKVSGYPMKENEVKNRLK 316 Query: 185 FSSSLI 202 F S++ Sbjct: 317 FYDSIL 322 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 52,144,643 Number of Sequences: 219361 Number of extensions: 1006321 Number of successful extensions: 2681 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 2639 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2681 length of database: 80,573,946 effective HSP length: 88 effective length of database: 61,270,178 effective search space used: 1470484272 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
