ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet117f02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_470112.1| Oryza sativa (japonica cultivar-group), mRNA 96 5e-17
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 96 5e-17
3dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 96 5e-17
4gb|AC133007.4| Oryza sativa chromosome 3 BAC OSJNBa0094J08 genom... 96 5e-17
5dbj|AK104541.1| Oryza sativa (japonica cultivar-group) cDNA clon... 96 5e-17
6dbj|AK065071.1| Oryza sativa (japonica cultivar-group) cDNA clon... 96 5e-17
7dbj|AK061407.1| Oryza sativa (japonica cultivar-group) cDNA clon... 96 5e-17
8gb|AY108866.1| Zea mays PCO116267 mRNA sequence 82 8e-13
9dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 52 7e-04
10dbj|AP005769.3| Oryza sativa (japonica cultivar-group) genomic D... 52 7e-04
11dbj|AP005760.3| Oryza sativa (japonica cultivar-group) genomic D... 52 7e-04
12dbj|AK106651.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 7e-04
13ref|XM_479393.1| Oryza sativa (japonica cultivar-group), mRNA 50 0.003
14dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.003
15dbj|AP005182.5| Oryza sativa (japonica cultivar-group) genomic D... 50 0.003
16gb|AE005674.1| Shigella flexneri 2a str. 301, complete genome 40 2.7
17ref|NM_192390.1| Oryza sativa (japonica cultivar-group), predic... 40 2.7
18ref|XM_473115.1| Oryza sativa (japonica cultivar-group), predic... 40 2.7
19gb|AC120877.15| Mus musculus chromosome 6, clone RP24-548D19, co... 40 2.7
20gb|AE014075.1| Escherichia coli CFT073, complete genome 40 2.7
21gb|CP000243.1| Escherichia coli UTI89, complete genome 40 2.7
22gb|U00096.2| Escherichia coli K-12 MG1655, complete genome 40 2.7
23gb|U00006.1|ECOUW89 E. coli chromosomal region from 89.2 to 92.8... 40 2.7
24emb|AL731626.4|OSJN00271 Oryza sativa genomic DNA, chromosome 4,... 40 2.7
25emb|AL662969.3|OSJN00169 Oryza sativa genomic DNA, chromosome 4,... 40 2.7
26dbj|AP009048.1| Escherichia coli W3110 DNA, complete genome 40 2.7
27dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.7
28dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.7
29gb|AE014073.1| Shigella flexneri 2a str. 2457T, complete genome 40 2.7
30dbj|AP003710.3| Oryza sativa (japonica cultivar-group) genomic D... 40 2.7
31emb|X16584.1|ECMTHM E. coli metH gene for 5-Methyltetrahydrofola... 40 2.7
32dbj|AK073036.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 2.7
33dbj|AK071432.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 2.7
34dbj|AK069291.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 2.7
35gb|AE005174.2| Escherichia coli O157:H7 EDL933, complete genome 40 2.7
36dbj|BA000007.2| Escherichia coli O157:H7 DNA, complete genome 40 2.7
37gb|CP000034.1| Shigella dysenteriae Sd197, complete genome 40 2.7
38gb|DQ272318.1| Escherichia coli strain B834 cobalamin-dependent ... 40 2.7
39gb|CP000036.1| Shigella boydii Sb227, complete genome 40 2.7
40gb|CP000038.1| Shigella sonnei Ss046, complete genome 40 2.7
41gb|J04975.1|ECOMETH E.coli methionine synthase (metH) gene, comp... 40 2.7 
>ref|XM_470112.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1454

 Score = 95.6 bits (48), Expect = 5e-17
 Identities = 72/80 (90%)
 Strand = Plus / Minus

                                                                        
Query: 135  gtcagagcgcctggtcgctggccgggaagaagagcttccagtacagcagctcgttccatg 194
            |||||| ||||| |||||  || |||||||||||||||||||| |||||||||||||| |
Sbjct: 1222 gtcagatcgcctcgtcgcgcgcggggaagaagagcttccagtagagcagctcgttccacg 1163

                                
Query: 195  cgtcgggcacgccggggagg 214
            ||||||| ||||||||||||
Sbjct: 1162 cgtcggggacgccggggagg 1143
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 95.6 bits (48), Expect = 5e-17
 Identities = 72/80 (90%)
 Strand = Plus / Plus

                                                                            
Query: 135      gtcagagcgcctggtcgctggccgggaagaagagcttccagtacagcagctcgttccatg 194
                |||||| ||||| |||||  || |||||||||||||||||||| |||||||||||||| |
Sbjct: 34007642 gtcagatcgcctcgtcgcgcgcggggaagaagagcttccagtagagcagctcgttccacg 34007701

                                    
Query: 195      cgtcgggcacgccggggagg 214
                ||||||| ||||||||||||
Sbjct: 34007702 cgtcggggacgccggggagg 34007721
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 95.6 bits (48), Expect = 5e-17
 Identities = 72/80 (90%)
 Strand = Plus / Plus

                                                                            
Query: 135      gtcagagcgcctggtcgctggccgggaagaagagcttccagtacagcagctcgttccatg 194
                |||||| ||||| |||||  || |||||||||||||||||||| |||||||||||||| |
Sbjct: 34098114 gtcagatcgcctcgtcgcgcgcggggaagaagagcttccagtagagcagctcgttccacg 34098173

                                    
Query: 195      cgtcgggcacgccggggagg 214
                ||||||| ||||||||||||
Sbjct: 34098174 cgtcggggacgccggggagg 34098193
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>gb|AC133007.4| Oryza sativa chromosome 3 BAC OSJNBa0094J08 genomic sequence, complete
             sequence
          Length = 172337

 Score = 95.6 bits (48), Expect = 5e-17
 Identities = 72/80 (90%)
 Strand = Plus / Minus

                                                                         
Query: 135   gtcagagcgcctggtcgctggccgggaagaagagcttccagtacagcagctcgttccatg 194
             |||||| ||||| |||||  || |||||||||||||||||||| |||||||||||||| |
Sbjct: 50049 gtcagatcgcctcgtcgcgcgcggggaagaagagcttccagtagagcagctcgttccacg 49990

                                 
Query: 195   cgtcgggcacgccggggagg 214
             ||||||| ||||||||||||
Sbjct: 49989 cgtcggggacgccggggagg 49970
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>dbj|AK104541.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-305-A10, full
            insert sequence
          Length = 1392

 Score = 95.6 bits (48), Expect = 5e-17
 Identities = 72/80 (90%)
 Strand = Plus / Minus

                                                                        
Query: 135  gtcagagcgcctggtcgctggccgggaagaagagcttccagtacagcagctcgttccatg 194
            |||||| ||||| |||||  || |||||||||||||||||||| |||||||||||||| |
Sbjct: 1207 gtcagatcgcctcgtcgcgcgcggggaagaagagcttccagtagagcagctcgttccacg 1148

                                
Query: 195  cgtcgggcacgccggggagg 214
            ||||||| ||||||||||||
Sbjct: 1147 cgtcggggacgccggggagg 1128
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>dbj|AK065071.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001K07, full
            insert sequence
          Length = 3436

 Score = 95.6 bits (48), Expect = 5e-17
 Identities = 72/80 (90%)
 Strand = Plus / Minus

                                                                        
Query: 135  gtcagagcgcctggtcgctggccgggaagaagagcttccagtacagcagctcgttccatg 194
            |||||| ||||| |||||  || |||||||||||||||||||| |||||||||||||| |
Sbjct: 3190 gtcagatcgcctcgtcgcgcgcggggaagaagagcttccagtagagcagctcgttccacg 3131

                                
Query: 195  cgtcgggcacgccggggagg 214
            ||||||| ||||||||||||
Sbjct: 3130 cgtcggggacgccggggagg 3111
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>dbj|AK061407.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-306-A07, full
            insert sequence
          Length = 1437

 Score = 95.6 bits (48), Expect = 5e-17
 Identities = 72/80 (90%)
 Strand = Plus / Minus

                                                                        
Query: 135  gtcagagcgcctggtcgctggccgggaagaagagcttccagtacagcagctcgttccatg 194
            |||||| ||||| |||||  || |||||||||||||||||||| |||||||||||||| |
Sbjct: 1252 gtcagatcgcctcgtcgcgcgcggggaagaagagcttccagtagagcagctcgttccacg 1193

                                
Query: 195  cgtcgggcacgccggggagg 214
            ||||||| ||||||||||||
Sbjct: 1192 cgtcggggacgccggggagg 1173
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>gb|AY108866.1| Zea mays PCO116267 mRNA sequence
          Length = 858

 Score = 81.8 bits (41), Expect = 8e-13
 Identities = 53/57 (92%)
 Strand = Plus / Minus

                                                                    
Query: 158 gggaagaagagcttccagtacagcagctcgttccatgcgtcgggcacgccggggagg 214
           |||||||||||||||||||| |||||||||||||| | ||| |||||||||||||||
Sbjct: 537 gggaagaagagcttccagtagagcagctcgttccacgtgtccggcacgccggggagg 481
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 52.0 bits (26), Expect = 7e-04
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                                  
Query: 181      cagctcgttccatgcgtcgggcacgccggggagg 214
                |||||||||||| ||||| |||||||||||||||
Sbjct: 26766904 cagctcgttccacgcgtccggcacgccggggagg 26766871
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>dbj|AP005769.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0051O02
          Length = 169532

 Score = 52.0 bits (26), Expect = 7e-04
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                               
Query: 181   cagctcgttccatgcgtcgggcacgccggggagg 214
             |||||||||||| ||||| |||||||||||||||
Sbjct: 21530 cagctcgttccacgcgtccggcacgccggggagg 21497
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>dbj|AP005760.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:B1047G05
          Length = 145431

 Score = 52.0 bits (26), Expect = 7e-04
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                                
Query: 181    cagctcgttccatgcgtcgggcacgccggggagg 214
              |||||||||||| ||||| |||||||||||||||
Sbjct: 124367 cagctcgttccacgcgtccggcacgccggggagg 124334
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>dbj|AK106651.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-113-F10, full
            insert sequence
          Length = 1621

 Score = 52.0 bits (26), Expect = 7e-04
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                              
Query: 181  cagctcgttccatgcgtcgggcacgccggggagg 214
            |||||||||||| ||||| |||||||||||||||
Sbjct: 1427 cagctcgttccacgcgtccggcacgccggggagg 1394
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>ref|XM_479393.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1326

 Score = 50.1 bits (25), Expect = 0.003
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                             
Query: 182  agctcgttccatgcgtcgggcacgccggggagg 214
            ||||||||||| ||||| |||||||||||||||
Sbjct: 1292 agctcgttccacgcgtccggcacgccggggagg 1260
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 50.1 bits (25), Expect = 0.003
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                                 
Query: 182      agctcgttccatgcgtcgggcacgccggggagg 214
                ||||||||||| ||||| |||||||||||||||
Sbjct: 27533748 agctcgttccacgcgtccggcacgccggggagg 27533716
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>dbj|AP005182.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0018C07
          Length = 141707

 Score = 50.1 bits (25), Expect = 0.003
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                              
Query: 182   agctcgttccatgcgtcgggcacgccggggagg 214
             ||||||||||| ||||| |||||||||||||||
Sbjct: 97719 agctcgttccacgcgtccggcacgccggggagg 97687
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>gb|AE005674.1| Shigella flexneri 2a str. 301, complete genome
          Length = 4607203

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 144     cctggtcgctggccgggaag 163
               ||||||||||||||||||||
Sbjct: 4244239 cctggtcgctggccgggaag 4244258
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>ref|NM_192390.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1179

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 187  gttccatgcgtcgggcacgccggggagg 214
            |||||||||||| |||||||||| ||||
Sbjct: 1149 gttccatgcgtccggcacgccggcgagg 1122
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>ref|XM_473115.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2136

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                
Query: 175  gtacagcagctcgttccatgcgtcgggcacgccggg 210
            |||||||||||||||||| |  || |||||||||||
Sbjct: 2094 gtacagcagctcgttccaggaatccggcacgccggg 2059
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>gb|AC120877.15| Mus musculus chromosome 6, clone RP24-548D19, complete sequence
          Length = 228206

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 4      cagggaacacacatttgatc 23
              ||||||||||||||||||||
Sbjct: 117369 cagggaacacacatttgatc 117350
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>gb|AE014075.1| Escherichia coli CFT073, complete genome
          Length = 5231428

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 144     cctggtcgctggccgggaag 163
               ||||||||||||||||||||
Sbjct: 4755438 cctggtcgctggccgggaag 4755457
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>gb|CP000243.1| Escherichia coli UTI89, complete genome
          Length = 5065741

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 144     cctggtcgctggccgggaag 163
               ||||||||||||||||||||
Sbjct: 4472310 cctggtcgctggccgggaag 4472329
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>gb|U00096.2| Escherichia coli K-12 MG1655, complete genome
          Length = 4639675

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 144     cctggtcgctggccgggaag 163
               ||||||||||||||||||||
Sbjct: 4224708 cctggtcgctggccgggaag 4224727
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>gb|U00006.1|ECOUW89 E. coli chromosomal region from 89.2 to 92.8 minutes
          Length = 176195

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 144   cctggtcgctggccgggaag 163
             ||||||||||||||||||||
Sbjct: 91927 cctggtcgctggccgggaag 91946
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>emb|AL731626.4|OSJN00271 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0002J11,
              complete sequence
          Length = 143582

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                  
Query: 175    gtacagcagctcgttccatgcgtcgggcacgccggg 210
              |||||||||||||||||| |  || |||||||||||
Sbjct: 139390 gtacagcagctcgttccaggaatccggcacgccggg 139425
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>emb|AL662969.3|OSJN00169 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0043L24,
             complete sequence
          Length = 164577

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                 
Query: 175   gtacagcagctcgttccatgcgtcgggcacgccggg 210
             |||||||||||||||||| |  || |||||||||||
Sbjct: 82010 gtacagcagctcgttccaggaatccggcacgccggg 82045
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>dbj|AP009048.1| Escherichia coli W3110 DNA, complete genome
          Length = 4646332

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 144     cctggtcgctggccgggaag 163
               ||||||||||||||||||||
Sbjct: 4230275 cctggtcgctggccgggaag 4230294
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                    
Query: 175      gtacagcagctcgttccatgcgtcgggcacgccggg 210
                |||||||||||||||||| |  || |||||||||||
Sbjct: 25355451 gtacagcagctcgttccaggaatccggcacgccggg 25355486
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                            
Query: 187      gttccatgcgtcgggcacgccggggagg 214
                |||||||||||| |||||||||| ||||
Sbjct: 26363100 gttccatgcgtccggcacgccggcgagg 26363127
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>gb|AE014073.1| Shigella flexneri 2a str. 2457T, complete genome
          Length = 4599354

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 144     cctggtcgctggccgggaag 163
               ||||||||||||||||||||
Sbjct: 3527982 cctggtcgctggccgggaag 3527963
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>dbj|AP003710.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBb0032K15
          Length = 126195

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 187   gttccatgcgtcgggcacgccggggagg 214
             |||||||||||| |||||||||| ||||
Sbjct: 36965 gttccatgcgtccggcacgccggcgagg 36992
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>emb|X16584.1|ECMTHM E. coli metH gene for 5-Methyltetrahydrofolate-homocysteine (vitamin
            B12) methyltransferase (E.C. 2.1.1.13)
          Length = 4098

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 144  cctggtcgctggccgggaag 163
            ||||||||||||||||||||
Sbjct: 3080 cctggtcgctggccgggaag 3099
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>dbj|AK073036.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023147O12, full
            insert sequence
          Length = 2659

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 187  gttccatgcgtcgggcacgccggggagg 214
            |||||||||||| |||||||||| ||||
Sbjct: 1215 gttccatgcgtccggcacgccggcgagg 1188
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>dbj|AK071432.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023092D01, full
            insert sequence
          Length = 2488

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                
Query: 175  gtacagcagctcgttccatgcgtcgggcacgccggg 210
            |||||||||||||||||| |  || |||||||||||
Sbjct: 2186 gtacagcagctcgttccaggaatccggcacgccggg 2151
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>dbj|AK069291.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023013B17, full
            insert sequence
          Length = 1557

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 187  gttccatgcgtcgggcacgccggggagg 214
            |||||||||||| |||||||||| ||||
Sbjct: 1197 gttccatgcgtccggcacgccggcgagg 1170
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>gb|AE005174.2| Escherichia coli O157:H7 EDL933, complete genome
          Length = 5528445

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 144     cctggtcgctggccgggaag 163
               ||||||||||||||||||||
Sbjct: 5103831 cctggtcgctggccgggaag 5103850
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>dbj|BA000007.2| Escherichia coli O157:H7 DNA, complete genome
          Length = 5498450

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 144     cctggtcgctggccgggaag 163
               ||||||||||||||||||||
Sbjct: 5035086 cctggtcgctggccgggaag 5035105
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>gb|CP000034.1| Shigella dysenteriae Sd197, complete genome
          Length = 4369232

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 144     cctggtcgctggccgggaag 163
               ||||||||||||||||||||
Sbjct: 4049648 cctggtcgctggccgggaag 4049629
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>gb|DQ272318.1| Escherichia coli strain B834 cobalamin-dependent homocysteine
            transmethylase (metH) gene, complete cds
          Length = 4153

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 144  cctggtcgctggccgggaag 163
            ||||||||||||||||||||
Sbjct: 3118 cctggtcgctggccgggaag 3137
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>gb|CP000036.1| Shigella boydii Sb227, complete genome
          Length = 4519823

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 144     cctggtcgctggccgggaag 163
               ||||||||||||||||||||
Sbjct: 4083325 cctggtcgctggccgggaag 4083344
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>gb|CP000038.1| Shigella sonnei Ss046, complete genome
          Length = 4825265

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 144     cctggtcgctggccgggaag 163
               ||||||||||||||||||||
Sbjct: 4442155 cctggtcgctggccgggaag 4442174
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>gb|J04975.1|ECOMETH E.coli methionine synthase (metH) gene, complete cds
          Length = 4097

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 144  cctggtcgctggccgggaag 163
            ||||||||||||||||||||
Sbjct: 3080 cctggtcgctggccgggaag 3099


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,247,529
Number of Sequences: 3902068
Number of extensions: 1247529
Number of successful extensions: 80390
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 79903
Number of HSP's gapped (non-prelim): 487
length of query: 214
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 192
effective length of database: 17,147,199,772
effective search space: 3292262356224
effective search space used: 3292262356224
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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