>YN95_YEAST (P53752) Putative 49.7 kDa membrane glycoprotein in BIO3-HXT17|
           intergenic region
          Length = 436

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 16/69 (23%)
 Frame = +2

Query: 89  SFFRSRKKLAKKDDEHTTNIGVKF-KRGKEHDYKEHSSSLL---------------AALT 220
           SF+     L KK+D+H T+    F K  K+ D + + +S+L               AA T
Sbjct: 167 SFYNIEPSLKKKEDDHITSSSCNFVKSSKDSDIEGNDASILCLFSNHGYDSDRHLSAAYT 226

Query: 221 YMSRLTEGG 247
            ++  T+GG
Sbjct: 227 QLALSTDGG 235

>NFIB_MOUSE (P97863) Nuclear factor 1 B-type (Nuclear factor 1/B) (NF1-B)|
           (NFI-B) (NF-I/B) (CCAAT-box-binding transcription
           factor) (CTF) (TGGCA-binding protein)
          Length = 570

 Score = 28.9 bits (63), Expect = 3.0
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = -2

Query: 393 SPGCSSRPRRPTYVRTAPHARSPRLAVFN*RXXXXXXXDVN*LISSSIDPP 241
           SP    +P +P +  T+P   SPRL+ F            + +IS+   PP
Sbjct: 312 SPTTMKKPEKPLFSSTSPQDSSPRLSTFPQHHHPGIPGVAHSVISTRTPPP 362

>SWR1_SCHPO (O13682) Helicase swr1 (EC 3.6.1.-)|
          Length = 1288

 Score = 28.9 bits (63), Expect = 3.0
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +2

Query: 62  TRAVEVEPPSFFRSRKKLAKKDDEHTTNI 148
           TR V   PPS  RSR+  AKK   H +++
Sbjct: 318 TRVVNKHPPSLRRSRRFFAKKSYNHVSDL 346

>NFIB_MESAU (P13622) Nuclear factor 1 B-type (Nuclear factor 1/B) (NF1-B)|
           (NFI-B) (NF-I/B) (CCAAT-box-binding transcription
           factor) (CTF) (TGGCA-binding protein)
          Length = 561

 Score = 28.9 bits (63), Expect = 3.0
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = -2

Query: 393 SPGCSSRPRRPTYVRTAPHARSPRLAVFN*RXXXXXXXDVN*LISSSIDPP 241
           SP    +P +P +  T+P   SPRL+ F            + +IS+   PP
Sbjct: 312 SPTTMKKPEKPLFSSTSPQDSSPRLSTFPQHHHPGIPGVAHSVISTRTPPP 362

>ZIM10_MOUSE (Q6P1E1) Retinoic acid-induced protein 17 (PIAS-like protein|
           Zimp10)
          Length = 1072

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 405 HNSYSPGCSSRPRRPTYVRTAPHARSP 325
           ++SYS G  +RP RP  V   PH+  P
Sbjct: 494 YSSYSQGSVNRPPRPVPVANYPHSPVP 520

>HRCA_BACSU (P25499) Heat-inducible transcription repressor hrcA|
          Length = 343

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
 Frame = +2

Query: 98  RSRKKLAKKDDE-----HTTNIGVKFKRGKEHDYKEHSSSLLAALTYMSRLTEGGSI 253
           RS   L +K+ +      + + G+  K GKE+DY+E  +  L   +Y     + GSI
Sbjct: 253 RSLLSLIEKEQDVLKLVQSPHTGISIKIGKENDYEEMENCSLITASYSVDQKQIGSI 309

>PT1_BUCAP (Q8KA50) Phosphoenolpyruvate-protein phosphotransferase (EC|
           2.7.3.9) (Phosphotransferase system, enzyme I)
          Length = 570

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +2

Query: 59  TTRAVEVEPPSFFRSRKKLAKKDDEHTTNIGVKFKRGKEHDYKEH 193
           +T  ++ E   FF  RKK  K+  E     G KF + KE  ++ H
Sbjct: 32  STENIKTEINKFFNGRKKSVKQLTEIKIATGEKFGKKKEGIFEGH 76


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,460,235
Number of Sequences: 219361
Number of extensions: 763878
Number of successful extensions: 2016
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1989
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2015
length of database: 80,573,946
effective HSP length: 112
effective length of database: 56,005,514
effective search space used: 1344132336
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)