ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet117e10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|BT009126.1| Triticum aestivum clone wl1n.pk0019.b5:fis, full ... 155 1e-34
2emb|CT573072.1| Kuenenia stuttgartiensis genome fragment KUST_D ... 46 0.094
3ref|NM_129791.2| Arabidopsis thaliana ATP binding / kinase/ prot... 42 1.5
4gb|AC158976.14| Mus musculus chromosome 15, clone RP24-71M3, com... 42 1.5
5gb|AC116525.24| Mus musculus chromosome 15, clone RP24-352I18, c... 42 1.5
6gb|AC005956.4| Arabidopsis thaliana chromosome 2 clone MHK10 map... 42 1.5
7emb|BX820539.1|CNS0A9L9 Arabidopsis thaliana Full-length cDNA Co... 42 1.5
8emb|BX820275.1|CNS0A9OX Arabidopsis thaliana Full-length cDNA Co... 42 1.5
9gb|AC152823.3| Mus musculus BAC clone RP24-302N10 from chromosom... 42 1.5
10gb|AC154852.2| Mus musculus BAC clone RP23-33B19 from 16, comple... 42 1.5
11gb|M81719.1|WHTGBL1A Triticum aestivu storage protein (Gbl1) gen... 40 5.8
12ref|XM_322306.1| Neurospora crassa OR74A predicted protein (NCU0... 40 5.8
13ref|XM_951513.1| Neurospora crassa OR74A hypothetical protein (N... 40 5.8
14gb|AC125014.8| Mus musculus chromosome 16, clone RP24-149C21, co... 40 5.8
15gb|AY317283.1| Mus musculus olfactory receptor Olfr198 (Olfr198)... 40 5.8
16gb|AC121290.6| Mus musculus chromosome 16, clone RP23-84N4, comp... 40 5.8
17ref|XM_805570.1| Trypanosoma cruzi strain CL Brener hypothetical... 40 5.8
18ref|XM_808875.1| Trypanosoma cruzi strain CL Brener hypothetical... 40 5.8
19gb|AY074074.1| Mus musculus olfactory receptor MOR182-8 pseudoge... 40 5.8
20gb|AC113386.2| Homo sapiens chromosome 5 clone RP11-350H19, comp... 40 5.8
21gb|AC091867.3| Homo sapiens chromosome 5 clone CTD-2365E22, comp... 40 5.8
22gb|CP000264.1| Jannaschia sp. CCS1, complete genome 40 5.8
23dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
24ref|NM_001011808.1| Mus musculus olfactory receptor 198 (Olfr198... 40 5.8
25dbj|AP003279.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
26dbj|AK120975.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.8
27gb|M64372.1|BLYBEG1 Barley embryo globulin (BEG1) mRNA, complete... 40 5.8
28dbj|D10759.1|UUKLRNAP Uukuniemi virus L RNA segment for RNA poly... 40 5.8

>gb|BT009126.1| Triticum aestivum clone wl1n.pk0019.b5:fis, full insert mRNA
           sequence
          Length = 692

 Score =  155 bits (78), Expect = 1e-34
 Identities = 162/187 (86%), Gaps = 11/187 (5%)
 Strand = Plus / Minus

                                                                       
Query: 212 taacaaacactgccaccacaggtatgatagatactcagatactcggtcccttttgcccga 271
           ||||||||||||||||||||||||| |||||||||||| |        || ||||||| |
Sbjct: 665 taacaaacactgccaccacaggtataatagatactcagtt--------ccctttgcccaa 614

                                                                       
Query: 272 tatagggttacacaacgacgaatctaggtaagataaga-gatgggtgg-tgggatctaga 329
           ||||||||||||||| |||||||||||||| | ||||| ||||||||| || ||||||||
Sbjct: 613 tatagggttacacaatgacgaatctaggtagg-taagaagatgggtgggtgtgatctaga 555

                                                                       
Query: 330 ggcgcgacaaaaacgacgacggtggtttcactatgacatccgtatccggcttccaaaaga 389
           |||||||||||||||||||||  |||||||||| || ||  ||||| |||||||||||||
Sbjct: 554 ggcgcgacaaaaacgacgacgacggtttcactacgatataagtatctggcttccaaaaga 495

                  
Query: 390 tcaagag 396
           |||||||
Sbjct: 494 tcaagag 488



to top

>emb|CT573072.1| Kuenenia stuttgartiensis genome fragment KUST_D (4 of 5)
          Length = 896449

 Score = 46.1 bits (23), Expect = 0.094
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 159    ctctctcttactaacagcaaaag 181
              |||||||||||||||||||||||
Sbjct: 613235 ctctctcttactaacagcaaaag 613257



to top

>ref|NM_129791.2| Arabidopsis thaliana ATP binding / kinase/ protein serine/threonine
            kinase AT2G42290 mRNA, complete cds
          Length = 2213

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 335  gacaaaaacgacgacggtggtttca 359
            |||||| ||||||||||||||||||
Sbjct: 1051 gacaaagacgacgacggtggtttca 1075



to top

>gb|AC158976.14| Mus musculus chromosome 15, clone RP24-71M3, complete sequence
          Length = 182465

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 303  gataagagatgggtggtggga 323
            |||||||||||||||||||||
Sbjct: 4675 gataagagatgggtggtggga 4695



to top

>gb|AC116525.24| Mus musculus chromosome 15, clone RP24-352I18, complete sequence
          Length = 149726

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 303   gataagagatgggtggtggga 323
             |||||||||||||||||||||
Sbjct: 35520 gataagagatgggtggtggga 35500



to top

>gb|AC005956.4| Arabidopsis thaliana chromosome 2 clone MHK10 map EG05C12, complete
            sequence
          Length = 85835

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 335  gacaaaaacgacgacggtggtttca 359
            |||||| ||||||||||||||||||
Sbjct: 1799 gacaaagacgacgacggtggtttca 1775



to top

>emb|BX820539.1|CNS0A9L9 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH45ZG12 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1580

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 335 gacaaaaacgacgacggtggtttca 359
           |||||| ||||||||||||||||||
Sbjct: 418 gacaaagacgacgacggtggtttca 442



to top

>emb|BX820275.1|CNS0A9OX Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH16ZF04 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1588

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 335 gacaaaaacgacgacggtggtttca 359
           |||||| ||||||||||||||||||
Sbjct: 468 gacaaagacgacgacggtggtttca 492



to top

>gb|AC152823.3| Mus musculus BAC clone RP24-302N10 from chromosome 15, complete
             sequence
          Length = 211214

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 303   gataagagatgggtggtggga 323
             |||||||||||||||||||||
Sbjct: 11608 gataagagatgggtggtggga 11588



to top

>gb|AC154852.2| Mus musculus BAC clone RP23-33B19 from 16, complete sequence
          Length = 184760

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 380    ttccaaaagatcaagagggcc 400
              |||||||||||||||||||||
Sbjct: 142718 ttccaaaagatcaagagggcc 142738



to top

>gb|M81719.1|WHTGBL1A Triticum aestivu storage protein (Gbl1) gene, complete cds
          Length = 4747

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 392  aagagggccgtggccgaggc 411
            ||||||||||||||||||||
Sbjct: 1909 aagagggccgtggccgaggc 1928



to top

>ref|XM_322306.1| Neurospora crassa OR74A predicted protein (NCU00221.1) partial mRNA
          Length = 2328

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 337  caaaaacgacgacggtggtt 356
            ||||||||||||||||||||
Sbjct: 1767 caaaaacgacgacggtggtt 1748



to top

>ref|XM_951513.1| Neurospora crassa OR74A hypothetical protein (NCU00221.1) partial
            mRNA
          Length = 2328

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 337  caaaaacgacgacggtggtt 356
            ||||||||||||||||||||
Sbjct: 1767 caaaaacgacgacggtggtt 1748



to top

>gb|AC125014.8| Mus musculus chromosome 16, clone RP24-149C21, complete sequence
          Length = 177471

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 213   aacaaacactgccaccacag 232
             ||||||||||||||||||||
Sbjct: 45759 aacaaacactgccaccacag 45778



to top

>gb|AY317283.1| Mus musculus olfactory receptor Olfr198 (Olfr198) gene, complete
           cds
          Length = 921

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 213 aacaaacactgccaccacag 232
           ||||||||||||||||||||
Sbjct: 39  aacaaacactgccaccacag 20



to top

>gb|AC121290.6| Mus musculus chromosome 16, clone RP23-84N4, complete sequence
          Length = 241184

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 213    aacaaacactgccaccacag 232
              ||||||||||||||||||||
Sbjct: 213585 aacaaacactgccaccacag 213604



to top

>ref|XM_805570.1| Trypanosoma cruzi strain CL Brener hypothetical protein
            (Tc00.1047053508567.100) partial mRNA
          Length = 4218

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 213  aacaaacactgccaccacag 232
            ||||||||||||||||||||
Sbjct: 2987 aacaaacactgccaccacag 3006



to top

>ref|XM_808875.1| Trypanosoma cruzi strain CL Brener hypothetical protein
            (Tc00.1047053507649.100) partial mRNA
          Length = 4218

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 213  aacaaacactgccaccacag 232
            ||||||||||||||||||||
Sbjct: 2987 aacaaacactgccaccacag 3006



to top

>gb|AY074074.1| Mus musculus olfactory receptor MOR182-8 pseudogene, partial
           sequence
          Length = 919

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 213 aacaaacactgccaccacag 232
           ||||||||||||||||||||
Sbjct: 39  aacaaacactgccaccacag 20



to top

>gb|AC113386.2| Homo sapiens chromosome 5 clone RP11-350H19, complete sequence
          Length = 109953

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 67     taaaactcaacatcaactac 86
              ||||||||||||||||||||
Sbjct: 107425 taaaactcaacatcaactac 107444



to top

>gb|AC091867.3| Homo sapiens chromosome 5 clone CTD-2365E22, complete sequence
          Length = 98183

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 67    taaaactcaacatcaactac 86
             ||||||||||||||||||||
Sbjct: 68542 taaaactcaacatcaactac 68523



to top

>gb|CP000264.1| Jannaschia sp. CCS1, complete genome
          Length = 4317977

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 398     gccgtggccgaggcagacgtgccg 421
               ||||||||||| ||||||||||||
Sbjct: 3987345 gccgtggccgatgcagacgtgccg 3987322



to top

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 33       tgaatgaagctcactaacca 52
                ||||||||||||||||||||
Sbjct: 36753549 tgaatgaagctcactaacca 36753530



to top

>ref|NM_001011808.1| Mus musculus olfactory receptor 198 (Olfr198), mRNA
          Length = 921

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 213 aacaaacactgccaccacag 232
           ||||||||||||||||||||
Sbjct: 39  aacaaacactgccaccacag 20



to top

>dbj|AP003279.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0529E05
          Length = 134982

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 33    tgaatgaagctcactaacca 52
             ||||||||||||||||||||
Sbjct: 79864 tgaatgaagctcactaacca 79845



to top

>dbj|AK120975.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023041K02, full
            insert sequence
          Length = 5459

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 33   tgaatgaagctcactaacca 52
            ||||||||||||||||||||
Sbjct: 3194 tgaatgaagctcactaacca 3175



to top

>gb|M64372.1|BLYBEG1 Barley embryo globulin (BEG1) mRNA, complete cds
          Length = 2122

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 392 aagagggccgtggccgaggc 411
           ||||||||||||||||||||
Sbjct: 497 aagagggccgtggccgaggc 516



to top

>dbj|D10759.1|UUKLRNAP Uukuniemi virus L RNA segment for RNA polymerase, complete cds
          Length = 6423

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 146  caagaacatatatctctctc 165
            ||||||||||||||||||||
Sbjct: 2819 caagaacatatatctctctc 2800


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,790,626
Number of Sequences: 3902068
Number of extensions: 3790626
Number of successful extensions: 72572
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 72476
Number of HSP's gapped (non-prelim): 95
length of query: 431
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 409
effective length of database: 17,147,199,772
effective search space: 7013204706748
effective search space used: 7013204706748
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top