| Clone Name | rbaet117e10 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT009126.1| Triticum aestivum clone wl1n.pk0019.b5:fis, full insert mRNA sequence Length = 692 Score = 155 bits (78), Expect = 1e-34 Identities = 162/187 (86%), Gaps = 11/187 (5%) Strand = Plus / Minus Query: 212 taacaaacactgccaccacaggtatgatagatactcagatactcggtcccttttgcccga 271 ||||||||||||||||||||||||| |||||||||||| | || ||||||| | Sbjct: 665 taacaaacactgccaccacaggtataatagatactcagtt--------ccctttgcccaa 614 Query: 272 tatagggttacacaacgacgaatctaggtaagataaga-gatgggtgg-tgggatctaga 329 ||||||||||||||| |||||||||||||| | ||||| ||||||||| || |||||||| Sbjct: 613 tatagggttacacaatgacgaatctaggtagg-taagaagatgggtgggtgtgatctaga 555 Query: 330 ggcgcgacaaaaacgacgacggtggtttcactatgacatccgtatccggcttccaaaaga 389 ||||||||||||||||||||| |||||||||| || || ||||| ||||||||||||| Sbjct: 554 ggcgcgacaaaaacgacgacgacggtttcactacgatataagtatctggcttccaaaaga 495 Query: 390 tcaagag 396 ||||||| Sbjct: 494 tcaagag 488
>emb|CT573072.1| Kuenenia stuttgartiensis genome fragment KUST_D (4 of 5) Length = 896449 Score = 46.1 bits (23), Expect = 0.094 Identities = 23/23 (100%) Strand = Plus / Plus Query: 159 ctctctcttactaacagcaaaag 181 ||||||||||||||||||||||| Sbjct: 613235 ctctctcttactaacagcaaaag 613257
>ref|NM_129791.2| Arabidopsis thaliana ATP binding / kinase/ protein serine/threonine kinase AT2G42290 mRNA, complete cds Length = 2213 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 335 gacaaaaacgacgacggtggtttca 359 |||||| |||||||||||||||||| Sbjct: 1051 gacaaagacgacgacggtggtttca 1075
>gb|AC158976.14| Mus musculus chromosome 15, clone RP24-71M3, complete sequence Length = 182465 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 303 gataagagatgggtggtggga 323 ||||||||||||||||||||| Sbjct: 4675 gataagagatgggtggtggga 4695
>gb|AC116525.24| Mus musculus chromosome 15, clone RP24-352I18, complete sequence Length = 149726 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 303 gataagagatgggtggtggga 323 ||||||||||||||||||||| Sbjct: 35520 gataagagatgggtggtggga 35500
>gb|AC005956.4| Arabidopsis thaliana chromosome 2 clone MHK10 map EG05C12, complete sequence Length = 85835 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 335 gacaaaaacgacgacggtggtttca 359 |||||| |||||||||||||||||| Sbjct: 1799 gacaaagacgacgacggtggtttca 1775
>emb|BX820539.1|CNS0A9L9 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH45ZG12 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1580 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 335 gacaaaaacgacgacggtggtttca 359 |||||| |||||||||||||||||| Sbjct: 418 gacaaagacgacgacggtggtttca 442
>emb|BX820275.1|CNS0A9OX Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH16ZF04 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1588 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 335 gacaaaaacgacgacggtggtttca 359 |||||| |||||||||||||||||| Sbjct: 468 gacaaagacgacgacggtggtttca 492
>gb|AC152823.3| Mus musculus BAC clone RP24-302N10 from chromosome 15, complete sequence Length = 211214 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 303 gataagagatgggtggtggga 323 ||||||||||||||||||||| Sbjct: 11608 gataagagatgggtggtggga 11588
>gb|AC154852.2| Mus musculus BAC clone RP23-33B19 from 16, complete sequence Length = 184760 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 380 ttccaaaagatcaagagggcc 400 ||||||||||||||||||||| Sbjct: 142718 ttccaaaagatcaagagggcc 142738
>gb|M81719.1|WHTGBL1A Triticum aestivu storage protein (Gbl1) gene, complete cds Length = 4747 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 392 aagagggccgtggccgaggc 411 |||||||||||||||||||| Sbjct: 1909 aagagggccgtggccgaggc 1928
>ref|XM_322306.1| Neurospora crassa OR74A predicted protein (NCU00221.1) partial mRNA Length = 2328 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 337 caaaaacgacgacggtggtt 356 |||||||||||||||||||| Sbjct: 1767 caaaaacgacgacggtggtt 1748
>ref|XM_951513.1| Neurospora crassa OR74A hypothetical protein (NCU00221.1) partial mRNA Length = 2328 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 337 caaaaacgacgacggtggtt 356 |||||||||||||||||||| Sbjct: 1767 caaaaacgacgacggtggtt 1748
>gb|AC125014.8| Mus musculus chromosome 16, clone RP24-149C21, complete sequence Length = 177471 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 213 aacaaacactgccaccacag 232 |||||||||||||||||||| Sbjct: 45759 aacaaacactgccaccacag 45778
>gb|AY317283.1| Mus musculus olfactory receptor Olfr198 (Olfr198) gene, complete cds Length = 921 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 213 aacaaacactgccaccacag 232 |||||||||||||||||||| Sbjct: 39 aacaaacactgccaccacag 20
>gb|AC121290.6| Mus musculus chromosome 16, clone RP23-84N4, complete sequence Length = 241184 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 213 aacaaacactgccaccacag 232 |||||||||||||||||||| Sbjct: 213585 aacaaacactgccaccacag 213604
>ref|XM_805570.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053508567.100) partial mRNA Length = 4218 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 213 aacaaacactgccaccacag 232 |||||||||||||||||||| Sbjct: 2987 aacaaacactgccaccacag 3006
>ref|XM_808875.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053507649.100) partial mRNA Length = 4218 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 213 aacaaacactgccaccacag 232 |||||||||||||||||||| Sbjct: 2987 aacaaacactgccaccacag 3006
>gb|AY074074.1| Mus musculus olfactory receptor MOR182-8 pseudogene, partial sequence Length = 919 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 213 aacaaacactgccaccacag 232 |||||||||||||||||||| Sbjct: 39 aacaaacactgccaccacag 20
>gb|AC113386.2| Homo sapiens chromosome 5 clone RP11-350H19, complete sequence Length = 109953 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 taaaactcaacatcaactac 86 |||||||||||||||||||| Sbjct: 107425 taaaactcaacatcaactac 107444
>gb|AC091867.3| Homo sapiens chromosome 5 clone CTD-2365E22, complete sequence Length = 98183 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 67 taaaactcaacatcaactac 86 |||||||||||||||||||| Sbjct: 68542 taaaactcaacatcaactac 68523
>gb|CP000264.1| Jannaschia sp. CCS1, complete genome Length = 4317977 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 398 gccgtggccgaggcagacgtgccg 421 ||||||||||| |||||||||||| Sbjct: 3987345 gccgtggccgatgcagacgtgccg 3987322
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 33 tgaatgaagctcactaacca 52 |||||||||||||||||||| Sbjct: 36753549 tgaatgaagctcactaacca 36753530
>ref|NM_001011808.1| Mus musculus olfactory receptor 198 (Olfr198), mRNA Length = 921 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 213 aacaaacactgccaccacag 232 |||||||||||||||||||| Sbjct: 39 aacaaacactgccaccacag 20
>dbj|AP003279.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0529E05 Length = 134982 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 33 tgaatgaagctcactaacca 52 |||||||||||||||||||| Sbjct: 79864 tgaatgaagctcactaacca 79845
>dbj|AK120975.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023041K02, full insert sequence Length = 5459 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 33 tgaatgaagctcactaacca 52 |||||||||||||||||||| Sbjct: 3194 tgaatgaagctcactaacca 3175
>gb|M64372.1|BLYBEG1 Barley embryo globulin (BEG1) mRNA, complete cds Length = 2122 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 392 aagagggccgtggccgaggc 411 |||||||||||||||||||| Sbjct: 497 aagagggccgtggccgaggc 516
>dbj|D10759.1|UUKLRNAP Uukuniemi virus L RNA segment for RNA polymerase, complete cds Length = 6423 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 146 caagaacatatatctctctc 165 |||||||||||||||||||| Sbjct: 2819 caagaacatatatctctctc 2800 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,790,626 Number of Sequences: 3902068 Number of extensions: 3790626 Number of successful extensions: 72572 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 28 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 72476 Number of HSP's gapped (non-prelim): 95 length of query: 431 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 409 effective length of database: 17,147,199,772 effective search space: 7013204706748 effective search space used: 7013204706748 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)