>YADD_ECOLI (P31665) Hypothetical protein yadD|
          Length = 300

 Score = 33.5 bits (75), Expect = 0.28
 Identities = 17/36 (47%), Positives = 21/36 (58%)
 Frame = +3

Query: 270 DHDALPLRV*I*FRPGAAAPAVRTLPWFCSFRAPDL 377
           DHD LPL V I F  G A P   ++ WF  F +P+L
Sbjct: 109 DHDKLPLVVPILFYQGEATPYPLSMCWFDMFYSPEL 144

>UBF1_MOUSE (P25976) Nucleolar transcription factor 1 (Upstream-binding factor|
           1) (UBF-1)
          Length = 765

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -1

Query: 446 EDHPDLLKYSCKVECKVRPVSPAKVW 369
           EDHPDL++ + K +   +P +P ++W
Sbjct: 181 EDHPDLIQNAKKSDIPEKPKTPQQLW 206

>UBF1_RAT (P25977) Nucleolar transcription factor 1 (Upstream-binding factor|
           1) (UBF-1)
          Length = 764

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -1

Query: 446 EDHPDLLKYSCKVECKVRPVSPAKVW 369
           EDHPDL++ + K +   +P +P ++W
Sbjct: 181 EDHPDLIQNAKKSDIPEKPKTPQQLW 206

>UBF1_HUMAN (P17480) Nucleolar transcription factor 1 (Upstream-binding factor|
           1) (UBF-1) (Autoantigen NOR-90)
          Length = 764

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -1

Query: 446 EDHPDLLKYSCKVECKVRPVSPAKVW 369
           EDHPDL++ + K +   +P +P ++W
Sbjct: 181 EDHPDLIQNAKKSDIPEKPKTPQQLW 206

>SYIC_MOUSE (Q8BU30) Isoleucyl-tRNA synthetase, cytoplasmic (EC 6.1.1.5)|
            (Isoleucine--tRNA ligase) (IleRS) (IRS)
          Length = 1262

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 14/55 (25%)
 Frame = -1

Query: 461  FSGQTE--DHPDLLKYSCKVECKVRPVSPAKVWSPKT------------AEPREC 339
            F G+TE  +  DLL  S +  C     SP+ + SP T            AEP+EC
Sbjct: 1132 FHGETEIQNQTDLLSLSGRTLCVTAGASPSPISSPSTLLCQYLNLQLLNAEPQEC 1186


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,167,316
Number of Sequences: 219361
Number of extensions: 1371116
Number of successful extensions: 3962
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3961
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3014947676
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)