ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet117e02 |
|---|---|
| Clone Library Name | barley_pub |
>PSBP_SOLTU (P93566) Oxygen-evolving enhancer protein 2, chloroplast precursor| (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) Length = 260 Score = 90.9 bits (224), Expect = 8e-19 Identities = 42/46 (91%), Positives = 44/46 (95%) Frame = -1 Query: 274 GGKHQLITATVADGKLYVCKAQAGDKRWFKGAKKFVENAAGSFSVA 137 GGKHQLITATV DGKLY+CKAQAGDKRWFKGAKKFVENAA SFS+A Sbjct: 215 GGKHQLITATVNDGKLYICKAQAGDKRWFKGAKKFVENAATSFSIA 260
>PSBP_LYCES (P29795) Oxygen-evolving enhancer protein 2, chloroplast precursor| (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) Length = 258 Score = 90.9 bits (224), Expect = 8e-19 Identities = 42/46 (91%), Positives = 44/46 (95%) Frame = -1 Query: 274 GGKHQLITATVADGKLYVCKAQAGDKRWFKGAKKFVENAAGSFSVA 137 GGKHQLITATV DGKLY+CKAQAGDKRWFKGAKKFVENAA SFS+A Sbjct: 213 GGKHQLITATVNDGKLYICKAQAGDKRWFKGAKKFVENAATSFSIA 258
>PSBP_CUCSA (Q9SLQ8) Oxygen-evolving enhancer protein 2, chloroplast precursor| (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) (OEC23) Length = 263 Score = 88.6 bits (218), Expect = 4e-18 Identities = 41/46 (89%), Positives = 43/46 (93%) Frame = -1 Query: 274 GGKHQLITATVADGKLYVCKAQAGDKRWFKGAKKFVENAAGSFSVA 137 GGKHQLITATV DGKLY+CKAQAGDKRWFKGA+KFVE AA SFSVA Sbjct: 218 GGKHQLITATVNDGKLYICKAQAGDKRWFKGARKFVEGAASSFSVA 263
>PSBP2_TOBAC (P18212) Oxygen-evolving enhancer protein 2-2, chloroplast| precursor (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane) Length = 265 Score = 88.6 bits (218), Expect = 4e-18 Identities = 41/46 (89%), Positives = 43/46 (93%) Frame = -1 Query: 274 GGKHQLITATVADGKLYVCKAQAGDKRWFKGAKKFVENAAGSFSVA 137 GGKHQLITATV DGKLY+CKAQAGDKRWFKGAKKFVEN A SFS+A Sbjct: 220 GGKHQLITATVNDGKLYICKAQAGDKRWFKGAKKFVENTATSFSLA 265
>PSBP_WHEAT (Q00434) Oxygen-evolving enhancer protein 2, chloroplast precursor| (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) Length = 258 Score = 88.2 bits (217), Expect = 5e-18 Identities = 44/46 (95%), Positives = 44/46 (95%) Frame = -1 Query: 274 GGKHQLITATVADGKLYVCKAQAGDKRWFKGAKKFVENAAGSFSVA 137 GGKHQLITATVADGKLYVCKAQ DKRWFKGAKKFVENAAGSFSVA Sbjct: 214 GGKHQLITATVADGKLYVCKAQR-DKRWFKGAKKFVENAAGSFSVA 258
>PSBP3_TOBAC (Q04127) Oxygen-evolving enhancer protein 2-3, chloroplast| precursor (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane) Length = 266 Score = 88.2 bits (217), Expect = 5e-18 Identities = 40/46 (86%), Positives = 43/46 (93%) Frame = -1 Query: 274 GGKHQLITATVADGKLYVCKAQAGDKRWFKGAKKFVENAAGSFSVA 137 GGKHQL+TATV DGKLY+CKAQAGDKRWFKGAKKFVEN A SFS+A Sbjct: 221 GGKHQLVTATVNDGKLYICKAQAGDKRWFKGAKKFVENTATSFSLA 266
>PSBP_PEA (P16059) Oxygen-evolving enhancer protein 2, chloroplast precursor| (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) Length = 259 Score = 87.8 bits (216), Expect = 6e-18 Identities = 40/46 (86%), Positives = 43/46 (93%) Frame = -1 Query: 274 GGKHQLITATVADGKLYVCKAQAGDKRWFKGAKKFVENAAGSFSVA 137 GGKHQLITATV DGKLY+CKAQAGDKRWFKGA+KFVE+ A SFSVA Sbjct: 214 GGKHQLITATVKDGKLYICKAQAGDKRWFKGARKFVEDTASSFSVA 259
>PSBP2_ARATH (O49344) Oxygen-evolving enhancer protein 2-2, chloroplast| precursor (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) Length = 265 Score = 87.4 bits (215), Expect = 8e-18 Identities = 41/46 (89%), Positives = 43/46 (93%) Frame = -1 Query: 274 GGKHQLITATVADGKLYVCKAQAGDKRWFKGAKKFVENAAGSFSVA 137 GGKHQLITATV GKLY+CKAQAGDKRWFKGA+KFVENAA SFSVA Sbjct: 220 GGKHQLITATVNGGKLYICKAQAGDKRWFKGARKFVENAATSFSVA 265
>PSBP_NARPS (Q40407) Oxygen-evolving enhancer protein 2, chloroplast precursor| (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) Length = 265 Score = 87.0 bits (214), Expect = 1e-17 Identities = 40/46 (86%), Positives = 43/46 (93%) Frame = -1 Query: 274 GGKHQLITATVADGKLYVCKAQAGDKRWFKGAKKFVENAAGSFSVA 137 GGKH LITATV+DGKLY+CKAQAGDKRWFKGAKKFVE+AA SFS A Sbjct: 220 GGKHLLITATVSDGKLYICKAQAGDKRWFKGAKKFVESAASSFSAA 265
>PSBP_SPIOL (P12302) Oxygen-evolving enhancer protein 2, chloroplast precursor| (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) Length = 267 Score = 85.9 bits (211), Expect = 2e-17 Identities = 39/46 (84%), Positives = 42/46 (91%) Frame = -1 Query: 274 GGKHQLITATVADGKLYVCKAQAGDKRWFKGAKKFVENAAGSFSVA 137 GGKHQ+I ATV DGKLY+CKAQAGDKRWFKGAKKFVE+A SFSVA Sbjct: 222 GGKHQVIAATVKDGKLYICKAQAGDKRWFKGAKKFVESATSSFSVA 267
>PSBP1_TOBAC (Q7DM39) Oxygen-evolving enhancer protein 2-1, chloroplast| precursor (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane) Length = 268 Score = 85.9 bits (211), Expect = 2e-17 Identities = 40/46 (86%), Positives = 43/46 (93%) Frame = -1 Query: 274 GGKHQLITATVADGKLYVCKAQAGDKRWFKGAKKFVENAAGSFSVA 137 GGKHQLI+ATV GKLY+CKAQAGDKRWFKGA+KFVENAA SFSVA Sbjct: 223 GGKHQLISATVNGGKLYICKAQAGDKRWFKGARKFVENAATSFSVA 268
>PSBP1_ARATH (Q42029) Oxygen-evolving enhancer protein 2-1, chloroplast| precursor (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) Length = 263 Score = 85.5 bits (210), Expect = 3e-17 Identities = 40/46 (86%), Positives = 43/46 (93%) Frame = -1 Query: 274 GGKHQLITATVADGKLYVCKAQAGDKRWFKGAKKFVENAAGSFSVA 137 GGKHQLITATV GKLY+CKAQAGDKRWFKGA+KFVE+AA SFSVA Sbjct: 218 GGKHQLITATVNGGKLYICKAQAGDKRWFKGARKFVESAATSFSVA 263
>PSBP_BRAJU (Q96334) Oxygen-evolving enhancer protein 2, chloroplast precursor| (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) (Fragment) Length = 217 Score = 84.3 bits (207), Expect = 7e-17 Identities = 40/46 (86%), Positives = 41/46 (89%) Frame = -1 Query: 274 GGKHQLITATVADGKLYVCKAQAGDKRWFKGAKKFVENAAGSFSVA 137 GGKHQLITATV GKLY+CKAQAGDKRWFKGA KFVE AA SFSVA Sbjct: 172 GGKHQLITATVNGGKLYICKAQAGDKRWFKGANKFVEKAATSFSVA 217
>PSBP_SINAL (P11594) Oxygen-evolving enhancer protein 2, chloroplast precursor| (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) Length = 260 Score = 84.3 bits (207), Expect = 7e-17 Identities = 40/46 (86%), Positives = 41/46 (89%) Frame = -1 Query: 274 GGKHQLITATVADGKLYVCKAQAGDKRWFKGAKKFVENAAGSFSVA 137 GGKHQLITATV GKLY+CKAQAGDKRWFKGA KFVE AA SFSVA Sbjct: 215 GGKHQLITATVNGGKLYICKAQAGDKRWFKGANKFVEKAATSFSVA 260
>PSBP_FRIAG (O49080) Oxygen-evolving enhancer protein 2, chloroplast precursor| (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) Length = 264 Score = 81.3 bits (199), Expect = 6e-16 Identities = 36/46 (78%), Positives = 41/46 (89%) Frame = -1 Query: 274 GGKHQLITATVADGKLYVCKAQAGDKRWFKGAKKFVENAAGSFSVA 137 GGKH +I+ATV DGKLY+CKAQAGDKRWFKGAKKFVE+ SF+VA Sbjct: 219 GGKHHVISATVTDGKLYICKAQAGDKRWFKGAKKFVESTTTSFNVA 264
>PSBP_CHLRE (P11471) Oxygen-evolving enhancer protein 2, chloroplast precursor| (OEE2) Length = 245 Score = 59.3 bits (142), Expect = 2e-09 Identities = 30/46 (65%), Positives = 34/46 (73%), Gaps = 1/46 (2%) Frame = -1 Query: 274 GGKHQLITATV-ADGKLYVCKAQAGDKRWFKGAKKFVENAAGSFSV 140 GG+HQLI ATV +D KLY+ K Q GDKRWFKGAKK A SF+V Sbjct: 199 GGRHQLIGATVGSDNKLYIIKIQIGDKRWFKGAKKEAMGAFDSFTV 244
>NLAL1_ARATH (Q8VZT0) Putative H/ACA ribonucleoprotein complex subunit 1-like| protein 1 Length = 202 Score = 29.6 bits (65), Expect = 2.1 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%) Frame = +2 Query: 56 HACPGSVSTRCFPEEIP-LNSPIGHVYLCDTEGSCGVLDELLGALEPPLVS 205 HAC G T+ E+IP N+PI YL + + G +DE+ G + L S Sbjct: 66 HACEGDAVTKLSQEKIPHFNAPI---YL-ENKTQIGKVDEIFGPINESLFS 112
>RF1_PICTO (Q6KZ24) Peptide chain release factor subunit 1 (Translation| termination factor aRF1) Length = 410 Score = 28.1 bits (61), Expect = 6.1 Identities = 16/51 (31%), Positives = 26/51 (50%) Frame = +2 Query: 2 REIDLLVHPSSCTNQRNTHACPGSVSTRCFPEEIPLNSPIGHVYLCDTEGS 154 + +DLL+ + +R T+ CP T+ F E+ P +P LCD + S Sbjct: 309 KNLDLLIISDTLKKRRYTYKCPVCNDTKTFTEK-PRETP-----LCDKDNS 353 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 32,213,155 Number of Sequences: 219361 Number of extensions: 555481 Number of successful extensions: 1297 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 1277 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1295 length of database: 80,573,946 effective HSP length: 66 effective length of database: 66,096,120 effective search space used: 1586306880 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
