ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet117d03 |
|---|---|
| Clone Library Name | barley_pub |
>AATC_ORYSA (P37833) Aspartate aminotransferase, cytoplasmic (EC 2.6.1.1)| (Transaminase A) Length = 407 Score = 57.4 bits (137), Expect = 9e-09 Identities = 27/29 (93%), Positives = 28/29 (96%) Frame = -1 Query: 299 DGRISMAGLSSRTVPHLADAIHAAVTKLK 213 DGRISMAGLS RT+PHLADAIHAAVTKLK Sbjct: 379 DGRISMAGLSGRTIPHLADAIHAAVTKLK 407
>AATC_DAUCA (P28734) Aspartate aminotransferase, cytoplasmic (EC 2.6.1.1)| (Transaminase A) Length = 405 Score = 53.9 bits (128), Expect = 1e-07 Identities = 26/26 (100%), Positives = 26/26 (100%) Frame = -1 Query: 299 DGRISMAGLSSRTVPHLADAIHAAVT 222 DGRISMAGLSSRTVPHLADAIHAAVT Sbjct: 377 DGRISMAGLSSRTVPHLADAIHAAVT 402
>AAT2_ARATH (P46645) Aspartate aminotransferase, cytoplasmic isozyme 1 (EC| 2.6.1.1) (Transaminase A) Length = 405 Score = 53.9 bits (128), Expect = 1e-07 Identities = 25/28 (89%), Positives = 28/28 (100%) Frame = -1 Query: 299 DGRISMAGLSSRTVPHLADAIHAAVTKL 216 DGRISMAGLSS+TVPHLADA+HAAVT+L Sbjct: 377 DGRISMAGLSSKTVPHLADAMHAAVTRL 404
>AAT3_ARATH (P46644) Aspartate aminotransferase, chloroplast precursor (EC| 2.6.1.1) (Transaminase A) Length = 449 Score = 53.1 bits (126), Expect = 2e-07 Identities = 25/27 (92%), Positives = 26/27 (96%) Frame = -1 Query: 299 DGRISMAGLSSRTVPHLADAIHAAVTK 219 DGRISMAGLSS+TVPHLADAIHA VTK Sbjct: 421 DGRISMAGLSSKTVPHLADAIHAVVTK 447
>AAT1_MEDSA (P28011) Aspartate aminotransferase 1 (EC 2.6.1.1) (Transaminase A)| Length = 418 Score = 49.7 bits (117), Expect = 2e-06 Identities = 23/28 (82%), Positives = 26/28 (92%) Frame = -1 Query: 299 DGRISMAGLSSRTVPHLADAIHAAVTKL 216 DGRISMAGLSS+TVPHLA AIHA VT++ Sbjct: 390 DGRISMAGLSSKTVPHLAHAIHAVVTRV 417
>AAT4_ARATH (P46646) Aspartate aminotransferase, cytoplasmic isozyme 2 (EC| 2.6.1.1) (Transaminase A) Length = 403 Score = 47.4 bits (111), Expect = 9e-06 Identities = 22/28 (78%), Positives = 25/28 (89%) Frame = -1 Query: 299 DGRISMAGLSSRTVPHLADAIHAAVTKL 216 DGRISMA LSS+TVP LADAIHA VT++ Sbjct: 375 DGRISMASLSSKTVPQLADAIHAVVTRI 402
>AATC_PIG (P00503) Aspartate aminotransferase, cytoplasmic (EC 2.6.1.1)| (Transaminase A) (Glutamate oxaloacetate transaminase 1) Length = 412 Score = 33.1 bits (74), Expect = 0.18 Identities = 13/28 (46%), Positives = 23/28 (82%) Frame = -1 Query: 296 GRISMAGLSSRTVPHLADAIHAAVTKLK 213 GRI+M GL+++ + ++A +IH AVTK++ Sbjct: 385 GRINMCGLTTKNLDYVATSIHEAVTKIQ 412
>AATC_MOUSE (P05201) Aspartate aminotransferase, cytoplasmic (EC 2.6.1.1)| (Transaminase A) (Glutamate oxaloacetate transaminase 1) Length = 412 Score = 33.1 bits (74), Expect = 0.18 Identities = 13/28 (46%), Positives = 23/28 (82%) Frame = -1 Query: 296 GRISMAGLSSRTVPHLADAIHAAVTKLK 213 GRI+M GL+++ + ++A +IH AVTK++ Sbjct: 385 GRINMCGLTTKNLDYVATSIHEAVTKIQ 412
>AATC_BOVIN (P33097) Aspartate aminotransferase, cytoplasmic (EC 2.6.1.1)| (Transaminase A) (Glutamate oxaloacetate transaminase 1) Length = 412 Score = 33.1 bits (74), Expect = 0.18 Identities = 13/28 (46%), Positives = 23/28 (82%) Frame = -1 Query: 296 GRISMAGLSSRTVPHLADAIHAAVTKLK 213 GRI+M GL+++ + ++A +IH AVTK++ Sbjct: 385 GRINMCGLTTKNLEYVATSIHEAVTKIQ 412
>AATC_CHICK (P00504) Aspartate aminotransferase, cytoplasmic (EC 2.6.1.1)| (Transaminase A) (Glutamate oxaloacetate transaminase 1) Length = 411 Score = 33.1 bits (74), Expect = 0.18 Identities = 13/28 (46%), Positives = 23/28 (82%) Frame = -1 Query: 296 GRISMAGLSSRTVPHLADAIHAAVTKLK 213 GRI+M GL+++ + ++A +IH AVTK++ Sbjct: 384 GRINMCGLTTKNLDYVAKSIHEAVTKIQ 411
>AATC_HORSE (P08906) Aspartate aminotransferase, cytoplasmic (EC 2.6.1.1)| (Transaminase A) (Glutamate oxaloacetate transaminase 1) Length = 412 Score = 32.3 bits (72), Expect = 0.31 Identities = 13/28 (46%), Positives = 22/28 (78%) Frame = -1 Query: 296 GRISMAGLSSRTVPHLADAIHAAVTKLK 213 GRI+M GL+++ + ++A +IH AVTK + Sbjct: 385 GRINMCGLTTKNLDYVATSIHEAVTKFQ 412
>DHSB_YEAST (P21801) Succinate dehydrogenase [ubiquinone] iron-sulfur protein,| mitochondrial precursor (EC 1.3.5.1) (IP) Length = 266 Score = 32.3 bits (72), Expect = 0.31 Identities = 13/37 (35%), Positives = 24/37 (64%) Frame = -3 Query: 222 KTEVNDNMATPFRNKILNCLQQCPKGSTRGVLLAELR 112 K +N++M+ + I+NC + CPKG G+ +AE++ Sbjct: 224 KAMLNNSMSLYRCHTIMNCTRTCPKGLNPGLAIAEIK 260
>AATC_HUMAN (P17174) Aspartate aminotransferase, cytoplasmic (EC 2.6.1.1)| (Transaminase A) (Glutamate oxaloacetate transaminase 1) Length = 412 Score = 32.0 bits (71), Expect = 0.41 Identities = 12/28 (42%), Positives = 24/28 (85%) Frame = -1 Query: 296 GRISMAGLSSRTVPHLADAIHAAVTKLK 213 GRI+++GL+++ + ++A +IH AVTK++ Sbjct: 385 GRINVSGLTTKNLDYVATSIHEAVTKIQ 412
>DHSB_MOUSE (Q9CQA3) Succinate dehydrogenase [ubiquinone] iron-sulfur protein,| mitochondrial precursor (EC 1.3.5.1) (Ip) (Iron-sulfur subunit of complex II) Length = 282 Score = 31.6 bits (70), Expect = 0.54 Identities = 18/56 (32%), Positives = 24/56 (42%) Frame = -3 Query: 273 ELQDCTPSCRCHTCCGYKTEVNDNMATPFRNKILNCLQQCPKGSTRGVLLAELRNL 106 +LQD RCHT I+NC Q CPKG G +AE++ + Sbjct: 235 KLQDPFSVYRCHT-------------------IMNCTQTCPKGLNPGKAIAEIKKM 271
>AATM_HUMAN (P00505) Aspartate aminotransferase, mitochondrial precursor (EC| 2.6.1.1) (Transaminase A) (Glutamate oxaloacetate transaminase 2) Length = 430 Score = 31.2 bits (69), Expect = 0.70 Identities = 17/27 (62%), Positives = 21/27 (77%) Frame = -1 Query: 299 DGRISMAGLSSRTVPHLADAIHAAVTK 219 DGRIS+AG++S V +LA AIH VTK Sbjct: 405 DGRISVAGVTSSNVGYLAHAIH-QVTK 430
>AATM_CHICK (P00508) Aspartate aminotransferase, mitochondrial precursor (EC| 2.6.1.1) (Transaminase A) (Glutamate oxaloacetate transaminase 2) Length = 423 Score = 31.2 bits (69), Expect = 0.70 Identities = 17/27 (62%), Positives = 21/27 (77%) Frame = -1 Query: 299 DGRISMAGLSSRTVPHLADAIHAAVTK 219 DGRIS+AG++S V +LA AIH VTK Sbjct: 398 DGRISVAGVASSNVGYLAHAIH-QVTK 423
>AATM_BOVIN (P12344) Aspartate aminotransferase, mitochondrial precursor (EC| 2.6.1.1) (Transaminase A) (Glutamate oxaloacetate transaminase 2) Length = 430 Score = 31.2 bits (69), Expect = 0.70 Identities = 17/27 (62%), Positives = 21/27 (77%) Frame = -1 Query: 299 DGRISMAGLSSRTVPHLADAIHAAVTK 219 DGRIS+AG++S V +LA AIH VTK Sbjct: 405 DGRISVAGVTSGNVAYLAHAIH-QVTK 430
>AATM_RAT (P00507) Aspartate aminotransferase, mitochondrial precursor (EC| 2.6.1.1) (Transaminase A) (Glutamate oxaloacetate transaminase 2) Length = 430 Score = 30.8 bits (68), Expect = 0.91 Identities = 17/27 (62%), Positives = 21/27 (77%) Frame = -1 Query: 299 DGRISMAGLSSRTVPHLADAIHAAVTK 219 DGRIS+AG++S V +LA AIH VTK Sbjct: 405 DGRISVAGVTSGNVGYLAHAIH-QVTK 430
>AATM_PIG (P00506) Aspartate aminotransferase, mitochondrial precursor (EC| 2.6.1.1) (Transaminase A) (Glutamate oxaloacetate transaminase 2) Length = 430 Score = 30.8 bits (68), Expect = 0.91 Identities = 17/27 (62%), Positives = 21/27 (77%) Frame = -1 Query: 299 DGRISMAGLSSRTVPHLADAIHAAVTK 219 DGRIS+AG++S V +LA AIH VTK Sbjct: 405 DGRISVAGVTSGNVGYLAHAIH-QVTK 430
>AATM_MOUSE (P05202) Aspartate aminotransferase, mitochondrial precursor (EC| 2.6.1.1) (Transaminase A) (Glutamate oxaloacetate transaminase 2) Length = 430 Score = 30.8 bits (68), Expect = 0.91 Identities = 17/27 (62%), Positives = 21/27 (77%) Frame = -1 Query: 299 DGRISMAGLSSRTVPHLADAIHAAVTK 219 DGRIS+AG++S V +LA AIH VTK Sbjct: 405 DGRISVAGVTSGNVGYLAHAIH-QVTK 430
>AATM_HORSE (P08907) Aspartate aminotransferase, mitochondrial (EC 2.6.1.1)| (Transaminase A) (Glutamate oxaloacetate transaminase 2) Length = 401 Score = 30.8 bits (68), Expect = 0.91 Identities = 17/27 (62%), Positives = 21/27 (77%) Frame = -1 Query: 299 DGRISMAGLSSRTVPHLADAIHAAVTK 219 DGRIS+AG++S V +LA AIH VTK Sbjct: 376 DGRISVAGVTSGNVGYLAHAIH-QVTK 401
>DHSB_MYCGR (O42772) Succinate dehydrogenase [ubiquinone] iron-sulfur protein,| mitochondrial precursor (EC 1.3.5.1) (IP) Length = 297 Score = 30.4 bits (67), Expect = 1.2 Identities = 13/37 (35%), Positives = 23/37 (62%) Frame = -3 Query: 222 KTEVNDNMATPFRNKILNCLQQCPKGSTRGVLLAELR 112 K +N++M+ + ILNC + CPKG + +AE++ Sbjct: 254 KDALNNSMSLYRCHTILNCSRTCPKGLNPALAIAEIK 290
>AAT1_ARATH (P46643) Aspartate aminotransferase, mitochondrial precursor (EC| 2.6.1.1) (Transaminase A) Length = 430 Score = 30.0 bits (66), Expect = 1.6 Identities = 16/27 (59%), Positives = 22/27 (81%) Frame = -1 Query: 299 DGRISMAGLSSRTVPHLADAIHAAVTK 219 +GRISMAG+++ V +LA+AIH VTK Sbjct: 403 NGRISMAGVTTGNVGYLANAIH-EVTK 428
>DHSB_HUMAN (P21912) Succinate dehydrogenase [ubiquinone] iron-sulfur protein,| mitochondrial precursor (EC 1.3.5.1) (Ip) (Iron-sulfur subunit of complex II) Length = 280 Score = 30.0 bits (66), Expect = 1.6 Identities = 17/56 (30%), Positives = 24/56 (42%) Frame = -3 Query: 273 ELQDCTPSCRCHTCCGYKTEVNDNMATPFRNKILNCLQQCPKGSTRGVLLAELRNL 106 +LQD RCHT I+NC + CPKG G +AE++ + Sbjct: 233 KLQDPFSLYRCHT-------------------IMNCTRTCPKGLNPGKAIAEIKKM 269
>DHSB_ASHGO (Q75CI4) Succinate dehydrogenase [ubiquinone] iron-sulfur protein,| mitochondrial precursor (EC 1.3.5.1) (IP) Length = 261 Score = 30.0 bits (66), Expect = 1.6 Identities = 17/56 (30%), Positives = 24/56 (42%) Frame = -3 Query: 279 RFELQDCTPSCRCHTCCGYKTEVNDNMATPFRNKILNCLQQCPKGSTRGVLLAELR 112 R +LQ+ RCHT I+NC + CPKG G +AE++ Sbjct: 219 REQLQNAMSVYRCHT-------------------IMNCTRTCPKGLNPGKAIAEIK 255
>AATC_RAT (P13221) Aspartate aminotransferase, cytoplasmic (EC 2.6.1.1)| (Transaminase A) (Glutamate oxaloacetate transaminase 1) Length = 412 Score = 29.6 bits (65), Expect = 2.0 Identities = 12/28 (42%), Positives = 22/28 (78%) Frame = -1 Query: 296 GRISMAGLSSRTVPHLADAIHAAVTKLK 213 GRI+M GL+++ + ++A +I+ AVTK + Sbjct: 385 GRINMCGLTTKNLDYVATSINEAVTKFQ 412
>DHSB_SCHPO (P21911) Succinate dehydrogenase [ubiquinone] iron-sulfur protein,| mitochondrial precursor (EC 1.3.5.1) (IP) Length = 252 Score = 29.6 bits (65), Expect = 2.0 Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 1/40 (2%) Frame = -3 Query: 222 KTEVNDNMATPFR-NKILNCLQQCPKGSTRGVLLAELRNL 106 + +V N + +R + I+NC + CPKG G+ +A+++ L Sbjct: 209 RLDVMQNSMSVYRCHTIMNCARTCPKGLNPGLAIAKVKAL 248
>DHSB_DROME (P21914) Succinate dehydrogenase [ubiquinone] iron-sulfur protein,| mitochondrial precursor (EC 1.3.5.1) (IP) Length = 297 Score = 29.3 bits (64), Expect = 2.7 Identities = 11/24 (45%), Positives = 16/24 (66%) Frame = -3 Query: 177 ILNCLQQCPKGSTRGVLLAELRNL 106 I+NC + CPKG G +AE++ L Sbjct: 255 IMNCTRTCPKGLNPGRAIAEIKKL 278
>DHSB_CANGA (Q6FWS8) Succinate dehydrogenase [ubiquinone] iron-sulfur protein,| mitochondrial precursor (EC 1.3.5.1) (IP) Length = 253 Score = 28.9 bits (63), Expect = 3.5 Identities = 12/37 (32%), Positives = 23/37 (62%) Frame = -3 Query: 222 KTEVNDNMATPFRNKILNCLQQCPKGSTRGVLLAELR 112 +T + ++M+ + I+NC + CPKG G +AE++ Sbjct: 211 RTMLQNSMSLYRCHTIMNCTRTCPKGLNPGRSIAEIK 247
>CE110_HUMAN (O43303) Centrosomal protein of 110 kDa (Cep110 protein)| Length = 1012 Score = 28.9 bits (63), Expect = 3.5 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 9/44 (20%) Frame = +1 Query: 187 EGGCHVI---------IHFSFVTAACMASARWGTVLELKPAMLI 291 E G H++ +H + ++ C+AS +GTV LKPA ++ Sbjct: 488 ERGAHIMNSTCAAMPKLHEPYASSQCIASPNFGTVSGLKPASML 531
>INSRR_RAT (Q64716) Insulin receptor-related protein precursor (EC 2.7.10.1)| (IRR) (IR-related receptor) (Fragments) Length = 581 Score = 28.9 bits (63), Expect = 3.5 Identities = 21/54 (38%), Positives = 25/54 (46%), Gaps = 12/54 (22%) Frame = -3 Query: 261 CTPSC----------RCHTC--CGYKTEVNDNMATPFRNKILNCLQQCPKGSTR 136 C P+C RC T CG+ EV + AT F +CL QCP G TR Sbjct: 258 CLPACPPGTYQYESWRCVTAELCGHLREVPGH-ATAFGIYEGSCLAQCPPGFTR 310
>AAT5_ARATH (P46248) Aspartate aminotransferase, chloroplast precursor (EC| 2.6.1.1) (Transaminase A) Length = 453 Score = 28.9 bits (63), Expect = 3.5 Identities = 14/21 (66%), Positives = 16/21 (76%) Frame = -1 Query: 299 DGRISMAGLSSRTVPHLADAI 237 DGRIS+AGLS +LADAI Sbjct: 425 DGRISLAGLSLAKCEYLADAI 445
>DXR_SYNY3 (Q55663) 1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC| 1.1.1.267) (DXP reductoisomerase) (1-deoxyxylulose-5-phosphate reductoisomerase) (2-C-methyl-D-erythritol 4-phosphate synthase) Length = 394 Score = 28.9 bits (63), Expect = 3.5 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 5/49 (10%) Frame = -3 Query: 177 ILNCLQQCPKGSTRGVLL----AELRNLPC-RLTKIVV*DSFVHPGLKM 46 I CLQ P+G R ++L R+LP RL + V D+ HP M Sbjct: 158 IFQCLQGVPEGGLRRIILTASGGAFRDLPVERLPFVTVQDALKHPNWSM 206
>AATM_LUPAN (P26563) Aspartate aminotransferase-P2, mitochondrial precursor (EC| 2.6.1.1) (Transaminase A) (Fragment) Length = 454 Score = 28.9 bits (63), Expect = 3.5 Identities = 14/21 (66%), Positives = 16/21 (76%) Frame = -1 Query: 299 DGRISMAGLSSRTVPHLADAI 237 DGRIS+AGLS +LADAI Sbjct: 426 DGRISLAGLSLAKCEYLADAI 446
>EXO70_CANGA (Q6FJW2) Exocyst complex protein EXO70| Length = 623 Score = 28.1 bits (61), Expect = 5.9 Identities = 14/45 (31%), Positives = 26/45 (57%) Frame = +2 Query: 71 LSQTTILVSLQGKFLSSANNTPLVEPFGHCCRQFKILLRKGVAML 205 L++ +L +LQ S+ N+ V+ + + ++LLRKG+A L Sbjct: 50 LARNNVLKTLQRNIDSTLNSVASVKDLANEASKHEVLLRKGIASL 94
>HIS4_METAC (Q8TU55) 1-(5-phosphoribosyl)-5-[(5-| phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase (EC 5.3.1.16) (Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase) Length = 245 Score = 28.1 bits (61), Expect = 5.9 Identities = 14/48 (29%), Positives = 23/48 (47%) Frame = +2 Query: 68 KLSQTTILVSLQGKFLSSANNTPLVEPFGHCCRQFKILLRKGVAMLSF 211 K ++T LV L G N P++E CR+ + ++ G + SF Sbjct: 44 KGAKTLHLVDLDGAIEGERKNAPIIEKIVQACREKGVSIQVGGGIRSF 91
>HEMA_IADA2 (P03446) Hemagglutinin precursor [Contains: Hemagglutinin HA1| chain; Hemagglutinin HA2 chain] Length = 564 Score = 28.1 bits (61), Expect = 5.9 Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 2/63 (3%) Frame = -3 Query: 285 HGRFELQDCTPSCRCHTCCGYKTEVNDNMATPFRNKILNCLQQCPKGSTRG--VLLAELR 112 HGR L++ P +C T C V N + PF+N + + +CPK G L LR Sbjct: 277 HGRI-LKNNLPMGQCVTECQLNEGVM-NTSKPFQNTSKHYIGKCPKYIPSGSLKLAIGLR 334 Query: 111 NLP 103 N+P Sbjct: 335 NVP 337
>BCK2_YEAST (P33306) Protein BCK2 (Bypass of kinase C protein)| Length = 851 Score = 27.7 bits (60), Expect = 7.7 Identities = 15/37 (40%), Positives = 21/37 (56%) Frame = +1 Query: 37 NHHHL*SGVNKTVSDNNFSKSTRQIPEFSQ*HASG*T 147 +HHH S VN T S + S + +IP + + ASG T Sbjct: 5 SHHHRSSSVNSTKSRSTESTNKWKIPHYYRRSASGST 41
>HIS4_METMA (Q8PWS2) 1-(5-phosphoribosyl)-5-[(5-| phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase (EC 5.3.1.16) (Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase) Length = 246 Score = 27.7 bits (60), Expect = 7.7 Identities = 13/49 (26%), Positives = 26/49 (53%) Frame = +2 Query: 65 TKLSQTTILVSLQGKFLSSANNTPLVEPFGHCCRQFKILLRKGVAMLSF 211 +K ++T LV L G N+P++E + C++ + ++ G + SF Sbjct: 43 SKGAKTLHLVDLDGAIEGERKNSPIIEKIVNTCKEKGVSIQVGGGIRSF 91 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 45,311,901 Number of Sequences: 219361 Number of extensions: 840749 Number of successful extensions: 2317 Number of sequences better than 10.0: 39 Number of HSP's better than 10.0 without gapping: 2228 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2317 length of database: 80,573,946 effective HSP length: 75 effective length of database: 64,121,871 effective search space used: 1538924904 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
