ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet117c11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|DQ409175.1| Bambusa ventricosa cytochrome P450 mRNA, complete... 76 9e-11
2gb|DQ160197.1| Homo sapiens RAD51-like 1 (S. cerevisiae) (RAD51L... 42 1.3
3gb|AC004518.1|AC004518 Homo sapiens chromosome 14, BAC CITB-135H... 42 1.3
4emb|AL589168.3|CNS07EG1 Human chromosome 14 DNA sequence BAC R-1... 42 1.3
5gb|AC121119.12| Mus musculus chromosome 1, clone RP23-395D10, co... 40 5.2
6gb|AC103357.10| Mus musculus chromosome 14, clone RP24-201I14, c... 40 5.2
7gb|AC099589.12| Mus musculus chromosome 1, clone RP23-337A19, co... 40 5.2
8gb|AC129190.3| Mus musculus BAC clone RP24-79D2 from chromosome ... 40 5.2
9emb|CR382361.9| Zebrafish DNA sequence from clone DKEY-24P6 in l... 40 5.2
10gb|AC010711.5| Drosophila melanogaster 3L BAC RP98-22D12 (Roswel... 40 5.2
11gb|AC091127.3| Drosophila melanogaster 3L BAC RP98-27E18 (Roswel... 40 5.2
12ref|NM_167853.1| Drosophila melanogaster CG9094-RA, transcript v... 40 5.2
13dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
14gb|AC104600.5| Homo sapiens BAC clone RP11-812O13 from 2, comple... 40 5.2
15gb|AC154119.8| Mus musculus chromosome 1, clone RP24-103A6, comp... 40 5.2
16dbj|BA000003.2| Buchnera aphidicola str. APS (Acyrthosiphon pisu... 40 5.2
17dbj|AP003526.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
18dbj|AP003708.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
19gb|AE003470.4| Drosophila melanogaster chromosome 3L, section 4 ... 40 5.2
20emb|AL773568.19| Mouse DNA sequence from clone RP23-59L23 on chr... 40 5.2

>gb|DQ409175.1| Bambusa ventricosa cytochrome P450 mRNA, complete cds
          Length = 1913

 Score = 75.8 bits (38), Expect = 9e-11
 Identities = 50/54 (92%)
 Strand = Plus / Minus

                                                                  
Query: 208  ggtagaggtgcagcggcaggcgtggcttggcgtgcagcaccagcggcttagcca 261
            |||||||||||| ||||||||| |||| ||||||||||||||||||||| ||||
Sbjct: 1741 ggtagaggtgcaccggcaggcgcggctgggcgtgcagcaccagcggcttggcca 1688



 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 51/58 (87%)
 Strand = Plus / Minus

                                                                      
Query: 320  ccaggtgaagccatggaggagcctgccgaaaagcatgacggtcatggccgtgccgagc 377
            |||||||||||| || |||||||||||||| ||||| ||| |||| ||||| ||||||
Sbjct: 1629 ccaggtgaagccctgcaggagcctgccgaagagcatcacgctcatcgccgtcccgagc 1572



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>gb|DQ160197.1| Homo sapiens RAD51-like 1 (S. cerevisiae) (RAD51L1) gene, complete cds
          Length = 660392

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 57     ggaaagatgacaacaaactta 77
              |||||||||||||||||||||
Sbjct: 656590 ggaaagatgacaacaaactta 656570



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>gb|AC004518.1|AC004518 Homo sapiens chromosome 14, BAC CITB-135H17  containing the RAD51L1
             gene, complete sequence
          Length = 123661

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 57    ggaaagatgacaacaaactta 77
             |||||||||||||||||||||
Sbjct: 16348 ggaaagatgacaacaaactta 16328



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>emb|AL589168.3|CNS07EG1 Human chromosome 14 DNA sequence BAC R-108B17 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 149805

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 57     ggaaagatgacaacaaactta 77
              |||||||||||||||||||||
Sbjct: 119198 ggaaagatgacaacaaactta 119218



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>gb|AC121119.12| Mus musculus chromosome 1, clone RP23-395D10, complete sequence
          Length = 221436

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 73     acttattaatggatcaatat 92
              ||||||||||||||||||||
Sbjct: 145210 acttattaatggatcaatat 145191



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>gb|AC103357.10| Mus musculus chromosome 14, clone RP24-201I14, complete sequence
          Length = 143401

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 60    aagatgacaacaaacttatt 79
             ||||||||||||||||||||
Sbjct: 58446 aagatgacaacaaacttatt 58427



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>gb|AC099589.12| Mus musculus chromosome 1, clone RP23-337A19, complete sequence
          Length = 264062

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 112    catggacatgagcagtagca 131
              ||||||||||||||||||||
Sbjct: 158347 catggacatgagcagtagca 158328



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>gb|AC129190.3| Mus musculus BAC clone RP24-79D2 from chromosome 1, complete sequence
          Length = 236342

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 112    catggacatgagcagtagca 131
              ||||||||||||||||||||
Sbjct: 135086 catggacatgagcagtagca 135067



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>emb|CR382361.9| Zebrafish DNA sequence from clone DKEY-24P6 in linkage group 3,
             complete sequence
          Length = 61415

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 43    tagtgtgtgtgaagggaaagatga 66
             |||||||| |||||||||||||||
Sbjct: 57230 tagtgtgtttgaagggaaagatga 57207



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>gb|AC010711.5| Drosophila melanogaster 3L BAC RP98-22D12 (Roswell Park Cancer
             Institute Drosophila BAC Library) complete sequence
          Length = 187438

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 44    agtgtgtgtgaagggaaagatgacaaca 71
             ||||||||||  ||||||||||||||||
Sbjct: 65326 agtgtgtgtgcggggaaagatgacaaca 65353



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>gb|AC091127.3| Drosophila melanogaster 3L BAC RP98-27E18 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 177835

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 44     agtgtgtgtgaagggaaagatgacaaca 71
              ||||||||||  ||||||||||||||||
Sbjct: 175227 agtgtgtgtgcggggaaagatgacaaca 175254



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>ref|NM_167853.1| Drosophila melanogaster CG9094-RA, transcript variant A (CG9094),
           mRNA
          Length = 1028

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 44  agtgtgtgtgaagggaaagatgacaaca 71
           ||||||||||  ||||||||||||||||
Sbjct: 332 agtgtgtgtgcggggaaagatgacaaca 359



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 53      gaagggaaagatgacaacaa 72
               ||||||||||||||||||||
Sbjct: 2025406 gaagggaaagatgacaacaa 2025425



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>gb|AC104600.5| Homo sapiens BAC clone RP11-812O13 from 2, complete sequence
          Length = 138969

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 40    gtctagtgtgtgtgaaggga 59
             ||||||||||||||||||||
Sbjct: 68907 gtctagtgtgtgtgaaggga 68926



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>gb|AC154119.8| Mus musculus chromosome 1, clone RP24-103A6, complete sequence
          Length = 159230

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 72    aacttattaatggatcaata 91
             ||||||||||||||||||||
Sbjct: 15355 aacttattaatggatcaata 15374



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>dbj|BA000003.2| Buchnera aphidicola str. APS (Acyrthosiphon pisum) genomic DNA, complete
              sequence
          Length = 640681

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 9      aataatattattactactcg 28
              ||||||||||||||||||||
Sbjct: 319669 aataatattattactactcg 319650



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>dbj|AP003526.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0548D03
          Length = 156709

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 53     gaagggaaagatgacaacaa 72
              ||||||||||||||||||||
Sbjct: 154186 gaagggaaagatgacaacaa 154205



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>dbj|AP003708.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0041F13
          Length = 163230

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 53    gaagggaaagatgacaacaa 72
             ||||||||||||||||||||
Sbjct: 46268 gaagggaaagatgacaacaa 46287



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>gb|AE003470.4| Drosophila melanogaster chromosome 3L, section 4 of 83 of the complete
              sequence
          Length = 318699

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 44     agtgtgtgtgaagggaaagatgacaaca 71
              ||||||||||  ||||||||||||||||
Sbjct: 189874 agtgtgtgtgcggggaaagatgacaaca 189901



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>emb|AL773568.19| Mouse DNA sequence from clone RP23-59L23 on chromosome X, complete
             sequence
          Length = 158374

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 47    gtgtgtgaagggaaagatga 66
             ||||||||||||||||||||
Sbjct: 26126 gtgtgtgaagggaaagatga 26145


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,085,941
Number of Sequences: 3902068
Number of extensions: 3085941
Number of successful extensions: 62221
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 62161
Number of HSP's gapped (non-prelim): 60
length of query: 386
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 364
effective length of database: 17,147,199,772
effective search space: 6241580717008
effective search space used: 6241580717008
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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