| Clone Name | rbaet117c11 |
|---|---|
| Clone Library Name | barley_pub |
>gb|DQ409175.1| Bambusa ventricosa cytochrome P450 mRNA, complete cds Length = 1913 Score = 75.8 bits (38), Expect = 9e-11 Identities = 50/54 (92%) Strand = Plus / Minus Query: 208 ggtagaggtgcagcggcaggcgtggcttggcgtgcagcaccagcggcttagcca 261 |||||||||||| ||||||||| |||| ||||||||||||||||||||| |||| Sbjct: 1741 ggtagaggtgcaccggcaggcgcggctgggcgtgcagcaccagcggcttggcca 1688 Score = 60.0 bits (30), Expect = 6e-06 Identities = 51/58 (87%) Strand = Plus / Minus Query: 320 ccaggtgaagccatggaggagcctgccgaaaagcatgacggtcatggccgtgccgagc 377 |||||||||||| || |||||||||||||| ||||| ||| |||| ||||| |||||| Sbjct: 1629 ccaggtgaagccctgcaggagcctgccgaagagcatcacgctcatcgccgtcccgagc 1572
>gb|DQ160197.1| Homo sapiens RAD51-like 1 (S. cerevisiae) (RAD51L1) gene, complete cds Length = 660392 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 57 ggaaagatgacaacaaactta 77 ||||||||||||||||||||| Sbjct: 656590 ggaaagatgacaacaaactta 656570
>gb|AC004518.1|AC004518 Homo sapiens chromosome 14, BAC CITB-135H17 containing the RAD51L1 gene, complete sequence Length = 123661 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 57 ggaaagatgacaacaaactta 77 ||||||||||||||||||||| Sbjct: 16348 ggaaagatgacaacaaactta 16328
>emb|AL589168.3|CNS07EG1 Human chromosome 14 DNA sequence BAC R-108B17 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 149805 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 57 ggaaagatgacaacaaactta 77 ||||||||||||||||||||| Sbjct: 119198 ggaaagatgacaacaaactta 119218
>gb|AC121119.12| Mus musculus chromosome 1, clone RP23-395D10, complete sequence Length = 221436 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 73 acttattaatggatcaatat 92 |||||||||||||||||||| Sbjct: 145210 acttattaatggatcaatat 145191
>gb|AC103357.10| Mus musculus chromosome 14, clone RP24-201I14, complete sequence Length = 143401 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 60 aagatgacaacaaacttatt 79 |||||||||||||||||||| Sbjct: 58446 aagatgacaacaaacttatt 58427
>gb|AC099589.12| Mus musculus chromosome 1, clone RP23-337A19, complete sequence Length = 264062 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 112 catggacatgagcagtagca 131 |||||||||||||||||||| Sbjct: 158347 catggacatgagcagtagca 158328
>gb|AC129190.3| Mus musculus BAC clone RP24-79D2 from chromosome 1, complete sequence Length = 236342 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 112 catggacatgagcagtagca 131 |||||||||||||||||||| Sbjct: 135086 catggacatgagcagtagca 135067
>emb|CR382361.9| Zebrafish DNA sequence from clone DKEY-24P6 in linkage group 3, complete sequence Length = 61415 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 43 tagtgtgtgtgaagggaaagatga 66 |||||||| ||||||||||||||| Sbjct: 57230 tagtgtgtttgaagggaaagatga 57207
>gb|AC010711.5| Drosophila melanogaster 3L BAC RP98-22D12 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 187438 Score = 40.1 bits (20), Expect = 5.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 44 agtgtgtgtgaagggaaagatgacaaca 71 |||||||||| |||||||||||||||| Sbjct: 65326 agtgtgtgtgcggggaaagatgacaaca 65353
>gb|AC091127.3| Drosophila melanogaster 3L BAC RP98-27E18 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 177835 Score = 40.1 bits (20), Expect = 5.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 44 agtgtgtgtgaagggaaagatgacaaca 71 |||||||||| |||||||||||||||| Sbjct: 175227 agtgtgtgtgcggggaaagatgacaaca 175254
>ref|NM_167853.1| Drosophila melanogaster CG9094-RA, transcript variant A (CG9094), mRNA Length = 1028 Score = 40.1 bits (20), Expect = 5.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 44 agtgtgtgtgaagggaaagatgacaaca 71 |||||||||| |||||||||||||||| Sbjct: 332 agtgtgtgtgcggggaaagatgacaaca 359
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 53 gaagggaaagatgacaacaa 72 |||||||||||||||||||| Sbjct: 2025406 gaagggaaagatgacaacaa 2025425
>gb|AC104600.5| Homo sapiens BAC clone RP11-812O13 from 2, complete sequence Length = 138969 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 40 gtctagtgtgtgtgaaggga 59 |||||||||||||||||||| Sbjct: 68907 gtctagtgtgtgtgaaggga 68926
>gb|AC154119.8| Mus musculus chromosome 1, clone RP24-103A6, complete sequence Length = 159230 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 72 aacttattaatggatcaata 91 |||||||||||||||||||| Sbjct: 15355 aacttattaatggatcaata 15374
>dbj|BA000003.2| Buchnera aphidicola str. APS (Acyrthosiphon pisum) genomic DNA, complete sequence Length = 640681 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 9 aataatattattactactcg 28 |||||||||||||||||||| Sbjct: 319669 aataatattattactactcg 319650
>dbj|AP003526.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0548D03 Length = 156709 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 53 gaagggaaagatgacaacaa 72 |||||||||||||||||||| Sbjct: 154186 gaagggaaagatgacaacaa 154205
>dbj|AP003708.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0041F13 Length = 163230 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 53 gaagggaaagatgacaacaa 72 |||||||||||||||||||| Sbjct: 46268 gaagggaaagatgacaacaa 46287
>gb|AE003470.4| Drosophila melanogaster chromosome 3L, section 4 of 83 of the complete sequence Length = 318699 Score = 40.1 bits (20), Expect = 5.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 44 agtgtgtgtgaagggaaagatgacaaca 71 |||||||||| |||||||||||||||| Sbjct: 189874 agtgtgtgtgcggggaaagatgacaaca 189901
>emb|AL773568.19| Mouse DNA sequence from clone RP23-59L23 on chromosome X, complete sequence Length = 158374 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 47 gtgtgtgaagggaaagatga 66 |||||||||||||||||||| Sbjct: 26126 gtgtgtgaagggaaagatga 26145 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,085,941 Number of Sequences: 3902068 Number of extensions: 3085941 Number of successful extensions: 62221 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 20 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 62161 Number of HSP's gapped (non-prelim): 60 length of query: 386 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 364 effective length of database: 17,147,199,772 effective search space: 6241580717008 effective search space used: 6241580717008 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)