Clone Information

BLAST Search Result

Clone Name	rbaet117b10
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	dbj\|AK109053.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	131	2e-27
2	dbj\|AP008212.1\| Oryza sativa (japonica cultivar-group) genomic D...	100	8e-18
3	dbj\|AP003526.3\| Oryza sativa (japonica cultivar-group) genomic D...	100	8e-18
4	dbj\|AP003708.2\| Oryza sativa (japonica cultivar-group) genomic D...	100	8e-18
5	gb\|AY109776.1\| Zea mays CL7443_1 mRNA sequence	76	1e-10
6	ref\|NM_123928.3\| Arabidopsis thaliana GAS41 AT5G45600 (GAS41) mR...	44	0.40
7	gb\|AY463617.1\| Arabidopsis thaliana TAF14b (TAF14b) mRNA, partia...	44	0.40
8	gb\|AY096486.1\| Arabidopsis thaliana unknown protein (At5g45600) ...	44	0.40
9	gb\|AY072123.1\| Arabidopsis thaliana unknown protein (At5g45600) ...	44	0.40
10	dbj\|AK034737.1\| Mus musculus 12 days embryo embryonic body betwe...	44	0.40
11	gb\|AC148320.3\| Mus musculus BAC clone RP24-555B2 from chromosome...	44	0.40
12	emb\|BX678773.5\| Mouse DNA sequence from clone RP23-304I21 on chr...	44	0.40
13	emb\|AL845298.5\| Mouse DNA sequence from clone RP23-280N11 on chr...	44	0.40
14	gb\|AC127694.3\| Mus musculus BAC clone RP23-235J3 from chromosome...	42	1.6
15	gb\|AC116322.5\| Mus musculus BAC clone RP23-273O16 from chromosom...	42	1.6
16	emb\|AL596130.13\| Mouse DNA sequence from clone RP23-209O5 on chr...	42	1.6
17	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	42	1.6
18	dbj\|AP001859.1\| Oryza sativa (japonica cultivar-group) genomic D...	42	1.6
19	dbj\|AP003434.2\| Oryza sativa (japonica cultivar-group) genomic D...	42	1.6
20	gb\|AC122007.3\| Mus musculus chromosome 5 clone RP24-344D14, comp...	40	6.3
21	gb\|AF165926.2\| Homo sapiens chromosome 5p13 BAC clone djn085o06 ...	40	6.3
22	gb\|AC102220.8\| Mus musculus chromosome 7, clone RP24-117E17, com...	40	6.3
23	gb\|AC149789.1\| Pan troglodytes BAC clone CH251-56H2 from Y, comp...	40	6.3
24	gb\|AC134406.14\| Mus musculus chromosome 9, clone RP24-349J23, co...	40	6.3
25	gb\|DP000009.1\| Oryza sativa (japonica cultivar-group) chromosome 3	40	6.3
26	gb\|AC120509.3\| Oryza sativa chromosome 3 BAC OSJNBb0081K01 genom...	40	6.3
27	gb\|AC010295.7\| Homo sapiens chromosome 5 clone CTB-143H13, compl...	40	6.3
28	gb\|AC146290.1\| Pan troglodytes BAC clone CH251-549P23 from Y, co...	40	6.3
29	emb\|BX001040.14\| Human DNA sequence from clone DAQB-72H16 on chr...	40	6.3
30	emb\|BX005439.8\| Human DNA sequence from clone DASS-81K16 on chro...	40	6.3
31	emb\|AL662866.7\| Human DNA sequence from clone XXbac-205D4 on chr...	40	6.3
32	emb\|AL645933.8\| Human DNA sequence from clone XXbac-181B23 on ch...	40	6.3
33	emb\|AL590644.14\| Human DNA sequence from clone RP11-380J14 on ch...	40	6.3
34	gb\|AC091514.2\| Rattus norvegicus strain Brown Norway clone RP31-...	40	6.3
35	emb\|AL133419.15\| Human DNA sequence from clone RP11-101E14 on ch...	40	6.3
36	emb\|CR753820.15\| Human DNA sequence from clone DADB-26I14 on chr...	40	6.3
37	emb\|CR753864.4\| Human DNA sequence from clone DAMA-BMC190B12 on ...	40	6.3
38	dbj\|BS000590.1\| Pan troglodytes chromosome Y clone:PTB-194A24, c...	40	6.3
39	gb\|AC027419.11\| Homo sapiens chromosome 8, clone RP11-654G14, co...	40	6.3
40	dbj\|AB202110.1\| Homo sapiens 3.8-1.1 gene for hypothetical protein	40	6.3
41	gb\|DP000054.1\| Pan troglodytes chromosome Y, partial sequence	40	6.3
42	gb\|AC115676.1\| Homo sapiens 12 BAC RP11-656E20 (Roswell Park Can...	40	6.3
43	gb\|AY013245.2\| Oryza sativa (japonica cultivar-group) chromosome...	40	6.3
44	dbj\|AB204811.1\| Homo sapiens 3.8-1.1 gene, exon 1, cell_line: QBL	40	6.3
45	gb\|AC025449.6\| Homo sapiens chromosome 5 clone CTD-2124B8, compl...	40	6.3
46	emb\|AJ549502.2\|HSA549502 Homo sapiens peptidylarginine deiminase...	40	6.3
47	gb\|AC159232.2\| Mus musculus BAC clone RP24-392E16 from chromosom...	40	6.3
48	ref\|NR_002812.1\| Homo sapiens MHC class I mRNA fragment 3.8-1 (3...	40	6.3
49	gb\|AC153586.7\| Mus musculus 6 BAC RP23-88E13 (Roswell Park Cance...	40	6.3
50	dbj\|AP008209.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.3
51	gb\|AC055818.9\|AC055818 Mus musculus, clone RP23-129C12, complete...	40	6.3
52	gb\|AC010979.3\|AC010979 Homo sapiens BAC clone RP11-384N21 from Y...	40	6.3
53	gb\|AC007546.6\| Homo sapiens 12 BAC RP11-946P6 (Roswell Park Canc...	40	6.3
54	dbj\|BA000025.2\| Homo sapiens genomic DNA, chromosome 6p21.3, HLA...	40	6.3
55	emb\|AL808147.21\| Mouse DNA sequence from clone RP23-80N9 on chro...	40	6.3
56	gb\|AC004184.1\|AC004184 Homo sapiens clone UWGC:R3A from 6p21, co...	40	6.3
57	dbj\|AB088105.1\| Homo sapiens 3.8-1.1 gene	40	6.3
58	gb\|L29376.1\|HUMMHI Homo sapiens (clone 3.8-1) MHC class I mRNA f...	40	6.3
59	dbj\|AP006417.1\| Lotus japonicus genomic DNA, chromosome 4, clone...	40	6.3
60	emb\|AL670951.6\| Mouse DNA sequence from clone RP23-6N18 on chrom...	40	6.3
61	emb\|AL121821.7\|CNS01DSN Human chromosome 14 DNA sequence BAC C-2...	40	6.3
62	dbj\|AP003787.2\| Homo sapiens genomic DNA, chromosome 8q23, clone...	40	6.3
63	dbj\|AB000882.1\| Homo sapiens genomic DNA for centromeric end of ...	40	6.3
64	dbj\|AB000879.1\| Homo sapiens genomic DNA for centromeric end of ...	40	6.3
65	dbj\|AB031007.1\| Homo sapiens DNA, MHC class I region, 7.1 ancest...	40	6.3

>dbj|AK109053.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-154-E07, full
           insert sequence
          Length = 1200

 Score =  131 bits (66), Expect = 2e-27
 Identities = 105/118 (88%)
 Strand = Plus / Minus

                                                                       
Query: 347 tgcccaaattgttggccaggaccagagataactctggattgctggggcattccctctatc 406
           |||||||||||||||||  || |||| | | || |||||||||| |||||||| ||||||
Sbjct: 992 tgcccaaattgttggccttgaacagaaacagctttggattgctgaggcattccatctatc 933

                                                                     
Query: 407 atgcttagctgccctctcagcttagctatgtgagcttgcacctgttgacgagcagcag 464
           |||||||  |||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 932 atgcttaattgccttctcagcttagctatgtgagcttgcacctgttgccgagcagcag 875

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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 99.6 bits (50), Expect = 8e-18
 Identities = 65/70 (92%)
 Strand = Plus / Minus

                                                                           
Query: 381     tggattgctggggcattccctctatcatgcttagctgccctctcagcttagctatgtgag 440
               |||||||||| |||||||| |||||||||||||  |||| ||||||||||||||||||||
Sbjct: 1992295 tggattgctgaggcattccatctatcatgcttaattgccttctcagcttagctatgtgag 1992236

                         
Query: 441     cttgcacctg 450
               ||||||||||
Sbjct: 1992235 cttgcacctg 1992226

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>dbj|AP003526.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0548D03
          Length = 156709

 Score = 99.6 bits (50), Expect = 8e-18
 Identities = 65/70 (92%)
 Strand = Plus / Minus

                                                                          
Query: 381    tggattgctggggcattccctctatcatgcttagctgccctctcagcttagctatgtgag 440
              |||||||||| |||||||| |||||||||||||  |||| ||||||||||||||||||||
Sbjct: 121075 tggattgctgaggcattccatctatcatgcttaattgccttctcagcttagctatgtgag 121016

                        
Query: 441    cttgcacctg 450
              ||||||||||
Sbjct: 121015 cttgcacctg 121006

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>dbj|AP003708.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0041F13
          Length = 163230

 Score = 99.6 bits (50), Expect = 8e-18
 Identities = 65/70 (92%)
 Strand = Plus / Minus

                                                                         
Query: 381   tggattgctggggcattccctctatcatgcttagctgccctctcagcttagctatgtgag 440
             |||||||||| |||||||| |||||||||||||  |||| ||||||||||||||||||||
Sbjct: 13157 tggattgctgaggcattccatctatcatgcttaattgccttctcagcttagctatgtgag 13098

                       
Query: 441   cttgcacctg 450
             ||||||||||
Sbjct: 13097 cttgcacctg 13088

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>gb|AY109776.1| Zea mays CL7443_1 mRNA sequence
          Length = 963

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 71/82 (86%)
 Strand = Plus / Minus

                                                                       
Query: 383 gattgctggggcattccctctatcatgcttagctgccctctcagcttagctatgtgagct 442
           ||||||||||||||||| ||||||||| ||| ||||| ||||||||| |||||| || | 
Sbjct: 758 gattgctggggcattccttctatcatggttaactgccttctcagcttggctatgggaacc 699

                                 
Query: 443 tgcacctgttgacgagcagcag 464
           || |||||||| ||||| ||||
Sbjct: 698 tgaacctgttgccgagctgcag 677

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>ref|NM_123928.3| Arabidopsis thaliana GAS41 AT5G45600 (GAS41) mRNA, complete cds
          Length = 1167

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 437 tgagcttgcacctgttgacgagcagc 462
           |||||||| |||||||||||||||||
Sbjct: 888 tgagcttgaacctgttgacgagcagc 863

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>gb|AY463617.1| Arabidopsis thaliana TAF14b (TAF14b) mRNA, partial cds
          Length = 804

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 437 tgagcttgcacctgttgacgagcagc 462
           |||||||| |||||||||||||||||
Sbjct: 731 tgagcttgaacctgttgacgagcagc 706

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>gb|AY096486.1| Arabidopsis thaliana unknown protein (At5g45600) mRNA, complete cds
          Length = 838

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 437 tgagcttgcacctgttgacgagcagc 462
           |||||||| |||||||||||||||||
Sbjct: 731 tgagcttgaacctgttgacgagcagc 706

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>gb|AY072123.1| Arabidopsis thaliana unknown protein (At5g45600) mRNA, complete cds
          Length = 1105

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 437 tgagcttgcacctgttgacgagcagc 462
           |||||||| |||||||||||||||||
Sbjct: 888 tgagcttgaacctgttgacgagcagc 863

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>dbj|AK034737.1| Mus musculus 12 days embryo embryonic body between diaphragm region
            and neck cDNA, RIKEN full-length enriched library,
            clone:9430030G21 product:unclassifiable, full insert
            sequence
          Length = 2425

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 33   ttagcaaaatggatttgcaaccctgt 58
            ||||||||||||||||||||| ||||
Sbjct: 2213 ttagcaaaatggatttgcaactctgt 2238

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>gb|AC148320.3| Mus musculus BAC clone RP24-555B2 from chromosome y, complete sequence
          Length = 192936

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 35     agcaaaatggatttgcaaccct 56
              ||||||||||||||||||||||
Sbjct: 137060 agcaaaatggatttgcaaccct 137081

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>emb|BX678773.5| Mouse DNA sequence from clone RP23-304I21 on chromosome X, complete
             sequence
          Length = 77564

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 35    agcaaaatggatttgcaaccct 56
             ||||||||||||||||||||||
Sbjct: 41565 agcaaaatggatttgcaaccct 41586

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>emb|AL845298.5| Mouse DNA sequence from clone RP23-280N11 on chromosome 2, complete
             sequence
          Length = 213826

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 33    ttagcaaaatggatttgcaaccctgt 58
             ||||||||||||||||||||| ||||
Sbjct: 49780 ttagcaaaatggatttgcaactctgt 49805

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>gb|AC127694.3| Mus musculus BAC clone RP23-235J3 from chromosome 7, complete sequence
          Length = 225732

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 81     aaagaaaaggaagaatagaca 101
              |||||||||||||||||||||
Sbjct: 126942 aaagaaaaggaagaatagaca 126962

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>gb|AC116322.5| Mus musculus BAC clone RP23-273O16 from chromosome 15, complete
            sequence
          Length = 190750

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 72   tggaacataaaagaaaaggaa 92
            |||||||||||||||||||||
Sbjct: 6130 tggaacataaaagaaaaggaa 6110

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>emb|AL596130.13| Mouse DNA sequence from clone RP23-209O5 on chromosome 11, complete
              sequence
          Length = 203000

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 75     aacataaaagaaaaggaagaa 95
              |||||||||||||||||||||
Sbjct: 128968 aacataaaagaaaaggaagaa 128988

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 75      aacataaaagaaaaggaagaa 95
               |||||||||||||||||||||
Sbjct: 7153182 aacataaaagaaaaggaagaa 7153162

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>dbj|AP001859.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0485D09
          Length = 150594

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 75    aacataaaagaaaaggaagaa 95
             |||||||||||||||||||||
Sbjct: 47830 aacataaaagaaaaggaagaa 47810

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>dbj|AP003434.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0452F10
          Length = 145120

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 75     aacataaaagaaaaggaagaa 95
              |||||||||||||||||||||
Sbjct: 140762 aacataaaagaaaaggaagaa 140742

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>gb|AC122007.3| Mus musculus chromosome 5 clone RP24-344D14, complete sequence
          Length = 129748

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 391   gggcattccctctatcatgc 410
             ||||||||||||||||||||
Sbjct: 24144 gggcattccctctatcatgc 24125

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>gb|AF165926.2| Homo sapiens chromosome 5p13 BAC clone djn085o06 containing NUP155 gene,
              complete sequence
          Length = 165617

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 11     aagaaaagtgcattccattatgttagca 38
              |||||| ||||||||||||| |||||||
Sbjct: 132002 aagaaaggtgcattccattacgttagca 132029

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>gb|AC102220.8| Mus musculus chromosome 7, clone RP24-117E17, complete sequence
          Length = 182996

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 361   gccaggaccagagataactc 380
             ||||||||||||||||||||
Sbjct: 71428 gccaggaccagagataactc 71409

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>gb|AC149789.1| Pan troglodytes BAC clone CH251-56H2 from Y, complete sequence
          Length = 172440

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 74    gaacataaaagaaaaggaag 93
             ||||||||||||||||||||
Sbjct: 53699 gaacataaaagaaaaggaag 53718

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>gb|AC134406.14| Mus musculus chromosome 9, clone RP24-349J23, complete sequence
          Length = 192663

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 419   cctctcagcttagctatgtgagct 442
             ||||| ||||||||||||||||||
Sbjct: 26087 cctctgagcttagctatgtgagct 26110

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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 4        aacaaaaaagaaaagtgcat 23
                ||||||||||||||||||||
Sbjct: 30824270 aacaaaaaagaaaagtgcat 30824251

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>gb|AC120509.3| Oryza sativa chromosome 3 BAC OSJNBb0081K01 genomic sequence, complete
              sequence
          Length = 122496

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 4      aacaaaaaagaaaagtgcat 23
              ||||||||||||||||||||
Sbjct: 118820 aacaaaaaagaaaagtgcat 118839

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>gb|AC010295.7| Homo sapiens chromosome 5 clone CTB-143H13, complete sequence
          Length = 108051

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 350   ccaaattgttggccaggacc 369
             ||||||||||||||||||||
Sbjct: 32365 ccaaattgttggccaggacc 32346

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>gb|AC146290.1| Pan troglodytes BAC clone CH251-549P23 from Y, complete sequence
          Length = 176345

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 74     gaacataaaagaaaaggaag 93
              ||||||||||||||||||||
Sbjct: 154137 gaacataaaagaaaaggaag 154156

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>emb|BX001040.14| Human DNA sequence from clone DAQB-72H16 on chromosome 6 Contains
            HCG26, the gene coding for a transcript for an MHC class
            I fragment (clone 3.8-1), the MICB gene for MHC class I
            polypeptide-related sequence B, the PPIP9 peptidylprolyl
            isomerase (cyclophilin) pseudogene 9, the RPL15P4
            ribosomal protein L15 pseudogene 4, the BAT1 gene for
            HLA-B associated transcript 1, the ATP6V1G2 gene for
            ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G
            isoform 2, the 5' end of the NFKBIL1 gene for nuclear
            factor of kappa light polypeptide gene enhancer in
            B-cells inhibitor-like 1 and two CpG islands, complete
            sequence
          Length = 83520

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 269  tgaagatacatttatcacat 288
            ||||||||||||||||||||
Sbjct: 1749 tgaagatacatttatcacat 1730

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>emb|BX005439.8| Human DNA sequence from clone DASS-81K16 on chromosome 6, complete
             sequence
          Length = 110001

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 269   tgaagatacatttatcacat 288
             ||||||||||||||||||||
Sbjct: 55468 tgaagatacatttatcacat 55449

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>emb|AL662866.7| Human DNA sequence from clone XXbac-205D4 on chromosome 6 Contains the
             gene for MHC class 1 region ORF (P5-1), the MICB gene for
             MHC class 1 polypeptide-related sequence B, the  HCG26
             gene for theHLA complex group 26 and two CpG islands,
             complete sequence
          Length = 97315

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 269   tgaagatacatttatcacat 288
             ||||||||||||||||||||
Sbjct: 54120 tgaagatacatttatcacat 54101

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>emb|AL645933.8| Human DNA sequence from clone XXbac-181B23 on chromosome 6 Contains the
             MICA gene for MHC class 1 polypeptide-related sequence A,
             the HCP5 gene for the HLA complex P5, the HCG26, the gene
             coding for a transcript for an MHC class I fragment (clone
             3.8-1)and four CpG islands, complete sequence
          Length = 111328

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 269   tgaagatacatttatcacat 288
             ||||||||||||||||||||
Sbjct: 89329 tgaagatacatttatcacat 89310

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>emb|AL590644.14| Human DNA sequence from clone RP11-380J14 on chromosome 1 Contains a
            novel gene (FLJ45933), the PADI1 gene for type I peptidyl
            arginine deiminase, the PADI3 gene for type III peptidyl
            arginine deiminase, the 5' end of the PADI4 gene for type
            IV peptidyl arginine deiminase, complete sequence
          Length = 164862

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 434  atgtgagcttgcacctgttg 453
            ||||||||||||||||||||
Sbjct: 8692 atgtgagcttgcacctgttg 8711

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>gb|AC091514.2| Rattus norvegicus strain Brown Norway clone RP31-223K12, complete
             sequence
          Length = 148370

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 81    aaagaaaaggaagaatagac 100
             ||||||||||||||||||||
Sbjct: 32193 aaagaaaaggaagaatagac 32212

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>emb|AL133419.15| Human DNA sequence from clone RP11-101E14 on chromosome 20 Contains the
             HSPEP1 heat shock 10 kDa protein 1 (chaperonin 10)
             pseudogene and two novel genes, complete sequence
          Length = 125057

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 79    taaaagaaaaggaagaatag 98
             ||||||||||||||||||||
Sbjct: 42317 taaaagaaaaggaagaatag 42298

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>emb|CR753820.15| Human DNA sequence from clone DADB-26I14 on chromosome 6, complete
            sequence
          Length = 74851

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 269  tgaagatacatttatcacat 288
            ||||||||||||||||||||
Sbjct: 1826 tgaagatacatttatcacat 1807

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>emb|CR753864.4| Human DNA sequence from clone DAMA-BMC190B12 on chromosome 6,
            complete sequence
          Length = 82192

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 269  tgaagatacatttatcacat 288
            ||||||||||||||||||||
Sbjct: 7984 tgaagatacatttatcacat 7965

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>dbj|BS000590.1| Pan troglodytes chromosome Y clone:PTB-194A24, complete sequence
          Length = 219969

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 74     gaacataaaagaaaaggaag 93
              ||||||||||||||||||||
Sbjct: 173541 gaacataaaagaaaaggaag 173560

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>gb|AC027419.11| Homo sapiens chromosome 8, clone RP11-654G14, complete sequence
          Length = 172880

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 30    atgttagcaaaatggatttg 49
             ||||||||||||||||||||
Sbjct: 22610 atgttagcaaaatggatttg 22629

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>dbj|AB202110.1| Homo sapiens 3.8-1.1 gene for hypothetical protein
          Length = 2547

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 269  tgaagatacatttatcacat 288
            ||||||||||||||||||||
Sbjct: 2295 tgaagatacatttatcacat 2276

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>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
          Length = 23952694

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 74       gaacataaaagaaaaggaag 93
                ||||||||||||||||||||
Sbjct: 20785445 gaacataaaagaaaaggaag 20785426

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>gb|AC115676.1| Homo sapiens 12 BAC RP11-656E20 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 78000

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 70    actggaacataaaagaaaag 89
             ||||||||||||||||||||
Sbjct: 71393 actggaacataaaagaaaag 71412

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>gb|AY013245.2| Oryza sativa (japonica cultivar-group) chromosome 3 BAC 36I5, partial
            sequence
          Length = 65547

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 4    aacaaaaaagaaaagtgcat 23
            ||||||||||||||||||||
Sbjct: 2259 aacaaaaaagaaaagtgcat 2240

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>dbj|AB204811.1| Homo sapiens 3.8-1.1 gene, exon 1, cell_line: QBL
          Length = 2233

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 269  tgaagatacatttatcacat 288
            ||||||||||||||||||||
Sbjct: 1981 tgaagatacatttatcacat 1962

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>gb|AC025449.6| Homo sapiens chromosome 5 clone CTD-2124B8, complete sequence
          Length = 199036

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 11     aagaaaagtgcattccattatgttagca 38
              |||||| ||||||||||||| |||||||
Sbjct: 160160 aagaaaggtgcattccattacgttagca 160133

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>emb|AJ549502.2|HSA549502 Homo sapiens peptidylarginine deiminase gene locus (PADI12346 genes)
          Length = 355060

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 434    atgtgagcttgcacctgttg 453
              ||||||||||||||||||||
Sbjct: 110232 atgtgagcttgcacctgttg 110251

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>gb|AC159232.2| Mus musculus BAC clone RP24-392E16 from chromosome 13, complete
             sequence
          Length = 169281

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 16    aagtgcattccattatgtta 35
             ||||||||||||||||||||
Sbjct: 72007 aagtgcattccattatgtta 71988

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>ref|NR_002812.1| Homo sapiens MHC class I mRNA fragment 3.8-1 (3.8-1) on chromosome 6
          Length = 1181

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 269  tgaagatacatttatcacat 288
            ||||||||||||||||||||
Sbjct: 1101 tgaagatacatttatcacat 1082

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>gb|AC153586.7| Mus musculus 6 BAC RP23-88E13 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 188553

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 9     aaaagaaaagtgcattccat 28
             ||||||||||||||||||||
Sbjct: 72248 aaaagaaaagtgcattccat 72229

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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 4        aacaaaaaagaaaagtgcat 23
                ||||||||||||||||||||
Sbjct: 30914793 aacaaaaaagaaaagtgcat 30914774

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>gb|AC055818.9|AC055818 Mus musculus, clone RP23-129C12, complete sequence
          Length = 237678

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 419   cctctcagcttagctatgtgagct 442
             ||||| ||||||||||||||||||
Sbjct: 52058 cctctgagcttagctatgtgagct 52035

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>gb|AC010979.3|AC010979 Homo sapiens BAC clone RP11-384N21 from Y, complete sequence
          Length = 109394

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 74    gaacataaaagaaaaggaag 93
             ||||||||||||||||||||
Sbjct: 42267 gaacataaaagaaaaggaag 42286

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>gb|AC007546.6| Homo sapiens 12 BAC RP11-946P6 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 168396

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 22     attccattatgttagcaaaa 41
              ||||||||||||||||||||
Sbjct: 125032 attccattatgttagcaaaa 125013

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>dbj|BA000025.2| Homo sapiens genomic DNA, chromosome 6p21.3, HLA Class I region
          Length = 2229817

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 269    tgaagatacatttatcacat 288
              ||||||||||||||||||||
Sbjct: 471651 tgaagatacatttatcacat 471670

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>emb|AL808147.21| Mouse DNA sequence from clone RP23-80N9 on chromosome 4, complete
             sequence
          Length = 233270

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 84    gaaaaggaagaatagacagc 103
             ||||||||||||||||||||
Sbjct: 85351 gaaaaggaagaatagacagc 85370

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>gb|AC004184.1|AC004184 Homo sapiens clone UWGC:R3A from 6p21, complete sequence
          Length = 44710

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 269   tgaagatacatttatcacat 288
             ||||||||||||||||||||
Sbjct: 20238 tgaagatacatttatcacat 20257

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>dbj|AB088105.1| Homo sapiens 3.8-1.1 gene
          Length = 2233

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 269  tgaagatacatttatcacat 288
            ||||||||||||||||||||
Sbjct: 1981 tgaagatacatttatcacat 1962

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>gb|L29376.1|HUMMHI Homo sapiens (clone 3.8-1) MHC class I mRNA fragment
          Length = 1181

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 269  tgaagatacatttatcacat 288
            ||||||||||||||||||||
Sbjct: 1101 tgaagatacatttatcacat 1082

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>dbj|AP006417.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT05D12, TM0303,
             complete sequence
          Length = 123806

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 73    ggaacataaaagaaaaggaa 92
             ||||||||||||||||||||
Sbjct: 78664 ggaacataaaagaaaaggaa 78645

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>emb|AL670951.6| Mouse DNA sequence from clone RP23-6N18 on chromosome 2, complete
             sequence
          Length = 207571

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 20    gcattccattatgttagcaa 39
             ||||||||||||||||||||
Sbjct: 81600 gcattccattatgttagcaa 81581

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>emb|AL121821.7|CNS01DSN Human chromosome 14 DNA sequence BAC C-2298J14 of library CalTech-D
             from chromosome 14 of Homo sapiens (Human), complete
             sequence
          Length = 127539

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 80    aaaagaaaaggaagaataga 99
             ||||||||||||||||||||
Sbjct: 27265 aaaagaaaaggaagaataga 27246

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>dbj|AP003787.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1904C11, complete
             sequence
          Length = 104429

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 30    atgttagcaaaatggatttg 49
             ||||||||||||||||||||
Sbjct: 20567 atgttagcaaaatggatttg 20586

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>dbj|AB000882.1| Homo sapiens genomic DNA for centromeric end of MHC class I region on
             chromosome 6, complete sequence
          Length = 148960

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 269   tgaagatacatttatcacat 288
             ||||||||||||||||||||
Sbjct: 91632 tgaagatacatttatcacat 91651

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>dbj|AB000879.1| Homo sapiens genomic DNA for centromeric end of MHC class I region on
            chromosome 6, cosmid clone: TY3A9, complete sequence
          Length = 39436

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 269  tgaagatacatttatcacat 288
            ||||||||||||||||||||
Sbjct: 5077 tgaagatacatttatcacat 5096

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>dbj|AB031007.1| Homo sapiens DNA, MHC class I region, 7.1 ancestral haplotype
          Length = 17063

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 269  tgaagatacatttatcacat 288
            ||||||||||||||||||||
Sbjct: 6413 tgaagatacatttatcacat 6432


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,854,402
Number of Sequences: 3902068
Number of extensions: 5854402
Number of successful extensions: 113084
Number of sequences better than 10.0: 65
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 112817
Number of HSP's gapped (non-prelim): 267
length of query: 464
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 442
effective length of database: 17,147,199,772
effective search space: 7579062299224
effective search space used: 7579062299224
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result