ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet117b02 |
|---|---|
| Clone Library Name | barley_pub |
>COGT2_ARATH (Q9SK82) Cytokinin-O-glucosyltransferase 2 (EC 2.4.1.-) (Zeatin| O-glucosyltransferase 2) Length = 489 Score = 32.3 bits (72), Expect = 0.28 Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 3/41 (7%) Frame = -3 Query: 392 EWGVGLKVGDEVRREVVES---RISCGHGGRRRRWQQVEAQ 279 EW VG+++G +V+RE VE+ + G G++ R + VE Q Sbjct: 416 EWDVGIEIGGDVKREEVEAVVRELMDGEKGKKMREKAVEWQ 456
>UNG_SFVKA (P32941) Uracil-DNA glycosylase (EC 3.2.2.-) (UDG)| Length = 218 Score = 30.0 bits (66), Expect = 1.4 Identities = 10/27 (37%), Positives = 17/27 (62%) Frame = -2 Query: 162 IHHHHAWNMNGIHQVFPFNYYCSFLFG 82 + ++ +N+N + VFP+NYY S G Sbjct: 102 VRYYKGYNLNNVEGVFPWNYYLSCKIG 128
>HAIR_RAT (P97609) Protein hairless| Length = 1181 Score = 28.5 bits (62), Expect = 4.1 Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 2/40 (5%) Frame = -3 Query: 299 WQQVEAQGGRVEGDER--PCCCWQVHGQP*QPHQRCSHAT 186 W Q E QG + D P CC + H H RCSH + Sbjct: 573 WAQREGQGPAMTEDSPGIPHCCSRCHHGLFNTHWRCSHCS 612
>SIAH2_XENLA (Q9I8X5) Ubiquitin ligase SIAH2 (EC 6.3.2.-) (Seven in absentia| homolog 2) (Xsiah-2) Length = 313 Score = 28.5 bits (62), Expect = 4.1 Identities = 11/23 (47%), Positives = 16/23 (69%) Frame = +1 Query: 256 SSPSTRPPCASTCCHRRRRPPWP 324 S PS+ PCAS C ++++PP P Sbjct: 2 SRPSSAGPCASKPCGKQKQPPPP 24
>HAIR_MOUSE (Q61645) Protein hairless| Length = 1182 Score = 28.5 bits (62), Expect = 4.1 Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 2/40 (5%) Frame = -3 Query: 299 WQQVEAQGGRVEGDER--PCCCWQVHGQP*QPHQRCSHAT 186 W Q E QG + D P CC + H H RCSH + Sbjct: 574 WAQREGQGPAMTEDSPGIPHCCSRCHHGLFNTHWRCSHCS 613
>YPDB_SHIFL (P0AE41) Hypothetical response regulatory protein ypdB| Length = 244 Score = 28.1 bits (61), Expect = 5.3 Identities = 12/32 (37%), Positives = 17/32 (53%) Frame = -2 Query: 204 TMFSCNLPPSRQFQIHHHHAWNMNGIHQVFPF 109 T F LPPS F+ H N+N I ++ P+ Sbjct: 181 TEFCSKLPPSHFFRCHRSFCVNLNKIREIEPW 212
>YPDB_ECOLI (P0AE39) Hypothetical response regulatory protein ypdB| Length = 244 Score = 28.1 bits (61), Expect = 5.3 Identities = 12/32 (37%), Positives = 17/32 (53%) Frame = -2 Query: 204 TMFSCNLPPSRQFQIHHHHAWNMNGIHQVFPF 109 T F LPPS F+ H N+N I ++ P+ Sbjct: 181 TEFCSKLPPSHFFRCHRSFCVNLNKIREIEPW 212
>YPDB_ECO57 (P0AE40) Hypothetical response regulatory protein ypdB| Length = 244 Score = 28.1 bits (61), Expect = 5.3 Identities = 12/32 (37%), Positives = 17/32 (53%) Frame = -2 Query: 204 TMFSCNLPPSRQFQIHHHHAWNMNGIHQVFPF 109 T F LPPS F+ H N+N I ++ P+ Sbjct: 181 TEFCSKLPPSHFFRCHRSFCVNLNKIREIEPW 212
>YPDB_ECOL6 (Q8FFE0) Hypothetical response regulatory protein ypdB| Length = 245 Score = 27.7 bits (60), Expect = 6.9 Identities = 12/32 (37%), Positives = 17/32 (53%) Frame = -2 Query: 204 TMFSCNLPPSRQFQIHHHHAWNMNGIHQVFPF 109 T F LPPS F+ H N+N I ++ P+ Sbjct: 182 TEFFSKLPPSHFFRCHRSFCVNLNKIREIEPW 213
>LOLA4_DROME (Q867Z4) Longitudinals lacking protein, isoforms F/I/K/T| Length = 970 Score = 27.7 bits (60), Expect = 6.9 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%) Frame = -3 Query: 341 ESRISCGHGGRRRRWQQVEAQGGRVE-GDERPC 246 ESR C H G++ RW+ + VE G + PC Sbjct: 900 ESRYVCRHCGKKYRWKSTLRRHENVECGGKEPC 932
>XYLA_THET8 (P26997) Xylose isomerase (EC 5.3.1.5)| Length = 387 Score = 27.3 bits (59), Expect = 9.0 Identities = 12/34 (35%), Positives = 18/34 (52%) Frame = +3 Query: 120 PDVFHSYSKHDDDESGIAGLGGGCMRTSLMRLSR 221 P F +++ +DE G+ GCMRT L+ R Sbjct: 282 PRHFDAHALRTEDEEGVWAFARGCMRTYLILKER 315
>XYLA_THECA (P56681) Xylose isomerase (EC 5.3.1.5)| Length = 387 Score = 27.3 bits (59), Expect = 9.0 Identities = 12/34 (35%), Positives = 18/34 (52%) Frame = +3 Query: 120 PDVFHSYSKHDDDESGIAGLGGGCMRTSLMRLSR 221 P F +++ +DE G+ GCMRT L+ R Sbjct: 282 PRHFDAHALRTEDEEGVWAFARGCMRTYLILKER 315
>KR107_HUMAN (P60409) Keratin-associated protein 10-7 (Keratin-associated| protein 10.7) (High sulfur keratin-associated protein 10.7) (Keratin-associated protein 18-7) (Keratin-associated protein 18.7) Length = 370 Score = 27.3 bits (59), Expect = 9.0 Identities = 11/28 (39%), Positives = 13/28 (46%) Frame = +1 Query: 214 CQGWPWTCQQQHGRSSPSTRPPCASTCC 297 C G CQQ +S+ T PC CC Sbjct: 129 CSGDSSCCQQSSCQSACCTSSPCQQACC 156
>SYA_HALSA (Q9HN24) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)| (AlaRS) Length = 929 Score = 27.3 bits (59), Expect = 9.0 Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 2/27 (7%) Frame = +3 Query: 114 ERPDVFHSY--SKHDDDESGIAGLGGG 188 + PD F+S ++HDD +SG AG GG Sbjct: 478 DAPDDFYSLVAARHDDGDSGAAGGDGG 504
>IL4RA_HUMAN (P24394) Interleukin-4 receptor alpha chain precursor (IL-4R-alpha)| (CD124 antigen) [Contains: Soluble interleukin-4 receptor alpha chain (sIL4Ralpha/prot) (IL-4-binding protein) (IL4-BP)] Length = 825 Score = 27.3 bits (59), Expect = 9.0 Identities = 10/26 (38%), Positives = 12/26 (46%) Frame = +1 Query: 241 QQHGRSSPSTRPPCASTCCHRRRRPP 318 Q+ G +P PC CC R PP Sbjct: 730 QEDGGQTPVMASPCCGCCCGDRSSPP 755 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 58,081,654 Number of Sequences: 219361 Number of extensions: 1172977 Number of successful extensions: 4146 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 3910 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4141 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 1375720320 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
