>GAG_SIVMS (P31634) Gag polyprotein [Contains: Core protein p17; Core protein|
           p24]
          Length = 510

 Score = 32.0 bits (71), Expect = 0.81
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +3

Query: 117 GFSSHAHRELLMPRRQNCLSCWTPPHQMA 203
           G   H  ++   PRRQ C  C  P HQMA
Sbjct: 397 GKEGHTAKQCKAPRRQGCWKCGKPGHQMA 425

>GAG_HV2BE (P18095) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 520

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +3

Query: 117 GFSSHAHRELLMPRRQNCLSCWTPPHQMAS 206
           G   H+ R+   PRRQ C  C  P H MA+
Sbjct: 394 GKEGHSARQCRAPRRQGCWKCGKPGHIMAN 423

>POL_HV2BE (P18096) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin)
           (PR); Reverse trans
          Length = 1549

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +3

Query: 117 GFSSHAHRELLMPRRQNCLSCWTPPHQMAS 206
           G   H+ R+   PRRQ C  C  P H MA+
Sbjct: 394 GKEGHSARQCRAPRRQGCWKCGKPGHIMAN 423

>GLMU_CAUCR (Q9A5Z3) Bifunctional protein glmU [Includes:|
           UDP-N-acetylglucosamine pyrophosphorylase (EC 2.7.7.23)
           (N-acetylglucosamine-1-phosphate uridyltransferase);
           Glucosamine-1-phosphate N-acetyltransferase (EC
           2.3.1.157)]
          Length = 462

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 8/74 (10%)
 Frame = -3

Query: 399 RFSTYEGSEDFLQDLKLLLSPVRVGAEAL----SWAAKKLEPNKIGLA----TSPSTTAV 244
           +F T+ G   F+     L++PVRVG  A+    S   K +E   + L+    TS +  A 
Sbjct: 385 KFETHVGKGAFIGSNSALVAPVRVGDGAMTGSGSVITKDVEDGALALSRADQTSKAGWAT 444

Query: 243 QDRVLKAAAKHESK 202
           + R +K A K + K
Sbjct: 445 KFRAIKQAQKDKKK 458

>HIRA_FUGRU (O42611) HIRA protein (TUP1-like enhancer of split protein 1)|
          Length = 1025

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 26/60 (43%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = -3

Query: 447  TLQYIGVLSLGLTIYLRFSTYEGSEDFLQDL-KLLLSPVRVGAEALSWAAKKLEPNKIGL 271
            TLQ        L IY RF   EGSE  L++L K LL PV   A   SW     EP  +GL
Sbjct: 936  TLQSAQEYRYWLLIYARFLVNEGSEYRLRELCKELLGPVHKSA-TTSW-----EPTTLGL 989

>SER2_GALME (O96615) Sericin-2 (Silk gum protein 2) (Fragment)|
          Length = 220

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 26/84 (30%), Positives = 37/84 (44%)
 Frame = +2

Query: 134 SQGASHASEAKLSVLLDSSTSDGFDSCFAAALRTRSCTAVVDGDVARPILFGSSFLAAQE 313
           SQ A  +S  ++S   D S+S    S  AAA  + S +  ++ D +      SS  AAQ 
Sbjct: 96  SQAAGSSSSRRVSA--DGSSSSSSASNSAAAQNSASSSETINADGSENESSSSSSSAAQN 153

Query: 314 SASAPTLTGDSNSFRSCRKSSEPS 385
           SA+   +     S  S   SS  S
Sbjct: 154 SATRSQVINADGSQSSSSSSSSAS 177

>LRBA_HUMAN (P50851) Lipopolysaccharide-responsive and beige-like anchor|
           protein (CDC4-like protein) (Beige-like protein)
          Length = 2863

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +2

Query: 188 STSDGFDSCFAAALRTRSCTAVVDGDVARPILFGSSFLAAQ 310
           +TSD FD CF  +  T     V  G +    LF  +  AAQ
Sbjct: 335 NTSDTFDKCFLGSSETADANRVFCGQMTAVYLFSEALNAAQ 375

>MPPB_LENED (Q9Y8B5) Mitochondrial-processing peptidase beta subunit,|
           mitochondrial precursor (EC 3.4.24.64) (Beta-MPP)
          Length = 466

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
 Frame = -3

Query: 426 LSLGLTIYLRFSTYEGSEDFLQDLKLLLSPVRVGAEALSWAAKKLEPNKIGLATSPSTTA 247
           L+LG     R  T+ GSE  ++D +L  + V +  E + W++    P+   +    S   
Sbjct: 242 LALGRLSSERKPTFVGSEARIRDDELPTAHVAIAVEGVGWSS----PDYFPMMVMQSIFG 297

Query: 246 VQDRVLKAAAKHESKPSDVEESNK-TDSFAS 157
             DR L A++   S+ S +  SN   +SF S
Sbjct: 298 NWDRSLGASSLLSSRLSHIISSNSLANSFMS 328

>AL2S8_MOUSE (Q8VHI4) Amyotrophic lateral sclerosis 2 chromosomal region|
           candidate gene 8 protein homolog (Calcium-response
           factor) (CaRF)
          Length = 689

 Score = 24.3 bits (51), Expect(2) = 3.1
 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = +2

Query: 269 ARPILFGSSFLAAQ--ESASAPTLTGDSNSFRSCRKSS 376
           +RP+L   S    Q  +  + PTL+ ++ +F  C+K S
Sbjct: 650 SRPVLVEESLSKNQVKQETNEPTLSTEAKTFLDCKKIS 687



 Score = 24.3 bits (51), Expect(2) = 3.1
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +2

Query: 170 SVLLDSSTSDGFDSCFAAALRTRSCTAVVDGDVARPI 280
           SVLL  S + G D+C      T S T  +   V  P+
Sbjct: 575 SVLLGQSQNPGTDTCLTQDNSTSSSTGHLPESVPNPV 611

>POL_HV2CA (P24107) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin)
           (PR); Reverse trans
          Length = 1461

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +3

Query: 117 GFSSHAHRELLMPRRQNCLSCWTPPHQMAS 206
           G   H+ R+   PRRQ C  C  P H M +
Sbjct: 394 GKEGHSARQCRAPRRQGCWKCGKPGHIMTN 423

>GAG_HV2CA (P24106) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 520

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +3

Query: 117 GFSSHAHRELLMPRRQNCLSCWTPPHQMAS 206
           G   H+ R+   PRRQ C  C  P H M +
Sbjct: 394 GKEGHSARQCRAPRRQGCWKCGKPGHIMTN 423

>NLP_DROME (Q27415) Nucleoplasmin-like protein (dNLP) (Chromatin|
           decondensation protein 1)
          Length = 152

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 21/68 (30%), Positives = 34/68 (50%)
 Frame = -3

Query: 390 TYEGSEDFLQDLKLLLSPVRVGAEALSWAAKKLEPNKIGLATSPSTTAVQDRVLKAAAKH 211
           T++  ED+ +  KL++  + +GAE     AK+ E N + + T   +  +   VLKA    
Sbjct: 19  TWDVDEDYARGQKLVIKQILLGAE-----AKENEFNVVEVNTPKDSVQIPIAVLKAGETR 73

Query: 210 ESKPSDVE 187
              P DVE
Sbjct: 74  AVNP-DVE 80

>EPAS1_HUMAN (Q99814) Endothelial PAS domain-containing protein 1 (EPAS-1)|
           (Member of PAS protein 2) (MOP2) (Hypoxia-inducible
           factor 2 alpha) (HIF-2 alpha) (HIF2 alpha) (HIF-1
           alpha-like factor) (HLF)
          Length = 870

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = -2

Query: 370 FPARPKAVAIPSKSGRGSALLGS*EARAEQDWPSDVPIHDG 248
           F A  KA ++P   G+ S  L S   R+   WP D P+H G
Sbjct: 609 FDAGSKA-SLPPCCGQASTPLSSMGGRSNTQWPPDPPLHFG 648

>YIQ9_YEAST (P40442) Hypothetical protein YIL169C precursor|
          Length = 995

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 27/82 (32%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
 Frame = +2

Query: 134 SQGASHASEAKLSVLLD-SSTSDGFDSCFAAALRTRSCTAVVDGDVARPILFGSSFLAAQ 310
           SQ +S AS+   SV    SSTSD   S   +A  T   ++     V+      SSF  + 
Sbjct: 208 SQSSSSASDVSSSVSQSASSTSDVSSSVSQSASSTSGVSSSGSQSVSSASGSSSSFPQST 267

Query: 311 ESASAPTLTGDSNSFRSCRKSS 376
            SAS  + +  SNS  S   S+
Sbjct: 268 SSASTASGSATSNSLSSITSSA 289

>GAG_HV2RO (P04590) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 521

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +3

Query: 117 GFSSHAHRELLMPRRQNCLSCWTPPHQMAS 206
           G   H+ R+   PRRQ C  C  P H M +
Sbjct: 394 GKEGHSARQCRAPRRQGCWKCGKPGHIMTN 423

>POL_HV2RO (P04584) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin)
           (PR); Reverse trans
          Length = 1463

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +3

Query: 117 GFSSHAHRELLMPRRQNCLSCWTPPHQMAS 206
           G   H+ R+   PRRQ C  C  P H M +
Sbjct: 394 GKEGHSARQCRAPRRQGCWKCGKPGHIMTN 423

>DBP5_DEBHA (Q6BRE4) ATP-dependent RNA helicase DBP5 (EC 3.6.1.-)|
          Length = 493

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 7/47 (14%)
 Frame = -3

Query: 270 ATSPSTTAVQDR-------VLKAAAKHESKPSDVEESNKTDSFASEA 151
           AT P   A +D+        +K A+  ESKP+DV+++ K++   +E+
Sbjct: 29  ATVPKVDAKEDKSNDESKQTIKPASTEESKPADVKDATKSEEQEAES 75

>SYFA_MOOTA (Q2RHN7) Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)|
           (Phenylalanine--tRNA ligase alpha chain) (PheRS)
          Length = 340

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 19/74 (25%), Positives = 31/74 (41%)
 Frame = -1

Query: 260 HPRRQCRTGFSKRQQSMNRSHLMWRSPTRQTVLPPRHEKLPVSV*TETVATSPSVWRIDV 81
           HP R  +  F   +  + R+H    SP +  V+  RH +LP+ +                
Sbjct: 150 HPARDMQDSFYITEDVLLRTHT---SPVQVRVMEARHPQLPIRI---------------- 190

Query: 80  SDVSNGTMSRRDDD 39
             ++ G + RRDDD
Sbjct: 191 --IAPGKVYRRDDD 202

>ZN516_MOUSE (Q7TSH3) Zinc finger protein 516|
          Length = 1157

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
 Frame = +2

Query: 149 HASEAKLSVLLDSSTSDGFDSCFAAALRTRSCTAVVDGDV---ARPILFGSSFLAAQESA 319
           H  EA  + L +   S+G D C +    T +C  V++G V      IL  SS    + +A
Sbjct: 93  HEPEAGEAQLGEMRVSEGLDGCASPTKSTSACNRVLNGAVPMDGSKILLRSSRKEVEGAA 152

Query: 320 SA 325
           SA
Sbjct: 153 SA 154

>RUMA_SHEON (Q8EBQ3) 23S rRNA (uracil-5-)-methyltransferase rumA (EC 2.1.1.-)|
           (23S rRNA(M-5-U1939)-methyltransferase)
          Length = 449

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 18/44 (40%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
 Frame = -3

Query: 354 KLLLSPVRVGA-EALSWAAKKLEPNK-IGLATSPSTTAVQDRVL 229
           KLLL P R GA E+L W  KK++P + + ++ +P++ A    VL
Sbjct: 375 KLLLDPARAGAYESLQW-LKKMKPRQVVYVSCNPASLARDSAVL 417


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,006,520
Number of Sequences: 219361
Number of extensions: 1317117
Number of successful extensions: 3588
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 3471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3587
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 3026354448
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)