ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet116f08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_479572.1| Oryza sativa (japonica cultivar-group), mRNA 70 6e-09
2ref|XM_479571.1| Oryza sativa (japonica cultivar-group), mRNA 70 6e-09
3dbj|AK103324.1| Oryza sativa (japonica cultivar-group) cDNA clon... 70 6e-09
4dbj|AK060899.1| Oryza sativa (japonica cultivar-group) cDNA clon... 70 6e-09
5ref|XM_479570.1| Oryza sativa (japonica cultivar-group), mRNA 68 3e-08
6dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 68 3e-08
7dbj|AP005167.4| Oryza sativa (japonica cultivar-group) genomic D... 68 3e-08
8gb|DQ083207.1| Oryza sativa (indica cultivar-group) clone 6S8A23... 64 4e-07
9emb|X95402.1|OSOSR40C1 O.sativa mRNA for novel protein, osr40c1 64 4e-07
10dbj|AK069815.1| Oryza sativa (japonica cultivar-group) cDNA clon... 64 4e-07
11gb|BT016654.1| Zea mays clone Contig487 mRNA sequence 62 2e-06
12gb|BT017211.1| Zea mays clone EL01N0372B08.c mRNA sequence 62 2e-06
13emb|Y08987.1|OSR40G2 O.sativa osr40g2 gene 62 2e-06
14ref|NM_187532.1| Oryza sativa (japonica cultivar-group), predic... 60 6e-06
15gb|BT016442.1| Zea mays clone Contig275 mRNA sequence 60 6e-06
16gb|BT018342.1| Zea mays clone EL01T0403C03.c mRNA sequence 60 6e-06
17gb|BT018000.1| Zea mays clone EL01N0526G03.c mRNA sequence 60 6e-06
18gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 60 6e-06
19dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 60 6e-06
20gb|AC126222.2| Oryza sativa (japonica cultivar-group) chromosome... 60 6e-06
21ref|XM_479573.1| Oryza sativa (japonica cultivar-group), mRNA 50 0.006
22gb|BT018086.1| Zea mays clone EL01N0552C09.c mRNA sequence 50 0.006
23gb|BT017376.1| Zea mays clone EL01N0325G07.c mRNA sequence 50 0.006
24emb|Y08988.1|OSR40G3 O.sativa osr40g3 gene 50 0.006
25dbj|AK072989.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.006
26emb|BX927071.12| Zebrafish DNA sequence from clone DKEY-286O23 i... 44 0.37
27gb|DQ022951.1| Triticum aestivum stress responsive protein mRNA,... 42 1.5
28gb|AC108739.8| Homo sapiens 3 BAC RP11-481M14 (Roswell Park Canc... 42 1.5
29emb|CR759865.13| Zebrafish DNA sequence from clone CH211-118E11 ... 42 1.5
30ref|NM_129462.2| Arabidopsis thaliana unknown protein AT2G39050 ... 40 5.8
31ref|NM_183466.2| Oryza sativa (japonica cultivar-group), mRNA 40 5.8
32gb|AC120856.6| Mus musculus chromosome 1, clone RP23-284B21, com... 40 5.8
33emb|BX641155.1|HSM807175 Homo sapiens mRNA; cDNA DKFZp686D23123 ... 40 5.8
34emb|BX572099.1| Prochlorococcus marinus MIT9313 complete genome;... 40 5.8
35gb|AC025895.9| Homo sapiens, clone RP11-610C20, complete sequence 40 5.8
36gb|AC005770.3| Arabidopsis thaliana chromosome 2 clone T7F6 map ... 40 5.8
37gb|AY093795.1| Arabidopsis thaliana At2g39050/T7F6.22 mRNA, comp... 40 5.8
38gb|AF411801.1|AF411801 Arabidopsis thaliana At2g39050/T7F6.22 mR... 40 5.8
39gb|AC157352.2| Mus musculus BAC clone RP24-483A21 from chromosom... 40 5.8
40dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
41emb|BX819436.1|CNS0A8S2 Arabidopsis thaliana Full-length cDNA Co... 40 5.8
42gb|AC112721.3| Homo sapiens BAC clone RP11-704F14 from 2, comple... 40 5.8
43gb|AY087909.1| Arabidopsis thaliana clone 39558 mRNA, complete s... 40 5.8
44dbj|AP002818.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
45gb|AC154121.6| Mus musculus chromosome 1, clone RP24-93A17, comp... 40 5.8
46dbj|AK104820.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.8
47dbj|AK104555.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.8
48dbj|AK071375.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.8
49dbj|AK060132.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.8
50emb|AL627073.15| Mouse DNA sequence from clone RP23-234E14 on ch... 40 5.8 
>ref|XM_479572.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1239

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 35/35 (100%)
 Strand = Plus / Minus

                                              
Query: 394 atctaccaggggaggatcttccagcgctggttgtc 428
           |||||||||||||||||||||||||||||||||||
Sbjct: 899 atctaccaggggaggatcttccagcgctggttgtc 865



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 32/33 (96%)
 Strand = Plus / Minus

                                            
Query: 399 ccaggggaggatcttccagcgctggttgtcgcc 431
           |||||||||||||||||||| ||||||||||||
Sbjct: 375 ccaggggaggatcttccagctctggttgtcgcc 343
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>ref|XM_479571.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1511

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 35/35 (100%)
 Strand = Plus / Minus

                                               
Query: 394  atctaccaggggaggatcttccagcgctggttgtc 428
            |||||||||||||||||||||||||||||||||||
Sbjct: 1114 atctaccaggggaggatcttccagcgctggttgtc 1080



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 32/33 (96%)
 Strand = Plus / Minus

                                            
Query: 399 ccaggggaggatcttccagcgctggttgtcgcc 431
           |||||||||||||||||||| ||||||||||||
Sbjct: 590 ccaggggaggatcttccagctctggttgtcgcc 558
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>dbj|AK103324.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033125K07, full
            insert sequence
          Length = 1512

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 35/35 (100%)
 Strand = Plus / Minus

                                               
Query: 394  atctaccaggggaggatcttccagcgctggttgtc 428
            |||||||||||||||||||||||||||||||||||
Sbjct: 1114 atctaccaggggaggatcttccagcgctggttgtc 1080



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 32/33 (96%)
 Strand = Plus / Minus

                                            
Query: 399 ccaggggaggatcttccagcgctggttgtcgcc 431
           |||||||||||||||||||| ||||||||||||
Sbjct: 590 ccaggggaggatcttccagctctggttgtcgcc 558
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>dbj|AK060899.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-D04, full
           insert sequence
          Length = 1239

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 35/35 (100%)
 Strand = Plus / Minus

                                              
Query: 394 atctaccaggggaggatcttccagcgctggttgtc 428
           |||||||||||||||||||||||||||||||||||
Sbjct: 899 atctaccaggggaggatcttccagcgctggttgtc 865



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 32/33 (96%)
 Strand = Plus / Minus

                                            
Query: 399 ccaggggaggatcttccagcgctggttgtcgcc 431
           |||||||||||||||||||| ||||||||||||
Sbjct: 375 ccaggggaggatcttccagctctggttgtcgcc 343
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>ref|XM_479570.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1209

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 34/34 (100%)
 Strand = Plus / Minus

                                              
Query: 398  accaggggaggatcttccagcgctggttgtcgcc 431
            ||||||||||||||||||||||||||||||||||
Sbjct: 1201 accaggggaggatcttccagcgctggttgtcgcc 1168



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 32/33 (96%)
 Strand = Plus / Minus

                                            
Query: 399 ccaggggaggatcttccagcgctggttgtcgcc 431
           |||||||||||||||||||| ||||||||||||
Sbjct: 512 ccaggggaggatcttccagcactggttgtcgcc 480
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 34/34 (100%)
 Strand = Plus / Minus

                                                  
Query: 398      accaggggaggatcttccagcgctggttgtcgcc 431
                ||||||||||||||||||||||||||||||||||
Sbjct: 28940904 accaggggaggatcttccagcgctggttgtcgcc 28940871



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 31/31 (100%)
 Strand = Plus / Minus

                                               
Query: 398      accaggggaggatcttccagcgctggttgtc 428
                |||||||||||||||||||||||||||||||
Sbjct: 28952114 accaggggaggatcttccagcgctggttgtc 28952084



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 32/33 (96%)
 Strand = Plus / Minus

                                                 
Query: 399      ccaggggaggatcttccagcgctggttgtcgcc 431
                |||||||||||||||||||| ||||||||||||
Sbjct: 28951426 ccaggggaggatcttccagctctggttgtcgcc 28951394



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 32/33 (96%)
 Strand = Plus / Minus

                                                 
Query: 399      ccaggggaggatcttccagcgctggttgtcgcc 431
                |||||||||||||||||||| ||||||||||||
Sbjct: 28939901 ccaggggaggatcttccagcactggttgtcgcc 28939869



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                         
Query: 407      ggatcttccagcgctggttgtcgcc 431
                |||||||||||||||||||||||||
Sbjct: 28956077 ggatcttccagcgctggttgtcgcc 28956053
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>dbj|AP005167.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBa0060O17
          Length = 180015

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 34/34 (100%)
 Strand = Plus / Minus

                                               
Query: 398   accaggggaggatcttccagcgctggttgtcgcc 431
             ||||||||||||||||||||||||||||||||||
Sbjct: 58441 accaggggaggatcttccagcgctggttgtcgcc 58408



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 31/31 (100%)
 Strand = Plus / Minus

                                            
Query: 398   accaggggaggatcttccagcgctggttgtc 428
             |||||||||||||||||||||||||||||||
Sbjct: 69651 accaggggaggatcttccagcgctggttgtc 69621



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 32/33 (96%)
 Strand = Plus / Minus

                                              
Query: 399   ccaggggaggatcttccagcgctggttgtcgcc 431
             |||||||||||||||||||| ||||||||||||
Sbjct: 68963 ccaggggaggatcttccagctctggttgtcgcc 68931



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 32/33 (96%)
 Strand = Plus / Minus

                                              
Query: 399   ccaggggaggatcttccagcgctggttgtcgcc 431
             |||||||||||||||||||| ||||||||||||
Sbjct: 57438 ccaggggaggatcttccagcactggttgtcgcc 57406



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                      
Query: 407   ggatcttccagcgctggttgtcgcc 431
             |||||||||||||||||||||||||
Sbjct: 73614 ggatcttccagcgctggttgtcgcc 73590
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>gb|DQ083207.1| Oryza sativa (indica cultivar-group) clone 6S8A23 mRNA sequence
          Length = 332

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 38/40 (95%)
 Strand = Plus / Minus

                                                   
Query: 392 gcatctaccaggggaggatcttccagcgctggttgtcgcc 431
           |||| |||||||||| ||||||||||||||||||||||||
Sbjct: 40  gcatttaccaggggacgatcttccagcgctggttgtcgcc 1
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>emb|X95402.1|OSOSR40C1 O.sativa mRNA for novel protein, osr40c1
          Length = 1458

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 38/40 (95%)
 Strand = Plus / Minus

                                                    
Query: 392  gcatctaccaggggaggatcttccagcgctggttgtcgcc 431
            |||| |||||||||| ||||||||||||||||||||||||
Sbjct: 1113 gcatttaccaggggacgatcttccagcgctggttgtcgcc 1074



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 32/33 (96%)
 Strand = Plus / Minus

                                            
Query: 399 ccaggggaggatcttccagcgctggttgtcgcc 431
           |||||||||||||||||||| ||||||||||||
Sbjct: 599 ccaggggaggatcttccagcactggttgtcgcc 567
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>dbj|AK069815.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023031K10, full
            insert sequence
          Length = 1765

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 38/40 (95%)
 Strand = Plus / Minus

                                                    
Query: 392  gcatctaccaggggaggatcttccagcgctggttgtcgcc 431
            |||| |||||||||| ||||||||||||||||||||||||
Sbjct: 1126 gcatttaccaggggacgatcttccagcgctggttgtcgcc 1087



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 32/33 (96%)
 Strand = Plus / Minus

                                            
Query: 399 ccaggggaggatcttccagcgctggttgtcgcc 431
           |||||||||||||||||||| ||||||||||||
Sbjct: 612 ccaggggaggatcttccagcactggttgtcgcc 580
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>gb|BT016654.1| Zea mays clone Contig487 mRNA sequence
          Length = 905

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 34/35 (97%)
 Strand = Plus / Minus

                                              
Query: 397 taccaggggaggatcttccagcgctggttgtcgcc 431
           |||||||||| ||||||||||||||||||||||||
Sbjct: 558 taccaggggacgatcttccagcgctggttgtcgcc 524
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>gb|BT017211.1| Zea mays clone EL01N0372B08.c mRNA sequence
          Length = 567

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 34/35 (97%)
 Strand = Plus / Minus

                                              
Query: 397 taccaggggaggatcttccagcgctggttgtcgcc 431
           |||||||||| ||||||||||||||||||||||||
Sbjct: 242 taccaggggacgatcttccagcgctggttgtcgcc 208
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>emb|Y08987.1|OSR40G2 O.sativa osr40g2 gene
          Length = 2101

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 31/31 (100%)
 Strand = Plus / Minus

                                           
Query: 398  accaggggaggatcttccagcgctggttgtc 428
            |||||||||||||||||||||||||||||||
Sbjct: 2041 accaggggaggatcttccagcgctggttgtc 2011



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 32/33 (96%)
 Strand = Plus / Minus

                                             
Query: 399  ccaggggaggatcttccagcgctggttgtcgcc 431
            |||||||||||||||||||| ||||||||||||
Sbjct: 1353 ccaggggaggatcttccagctctggttgtcgcc 1321
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>ref|NM_187532.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1122

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 33/34 (97%)
 Strand = Plus / Minus

                                              
Query: 398  accaggggaggatcttccagcgctggttgtcgcc 431
            ||||||||| ||||||||||||||||||||||||
Sbjct: 1045 accaggggacgatcttccagcgctggttgtcgcc 1012



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 32/33 (96%)
 Strand = Plus / Minus

                                            
Query: 399 ccaggggaggatcttccagcgctggttgtcgcc 431
           |||||||||||||||||||| ||||||||||||
Sbjct: 537 ccaggggaggatcttccagcactggttgtcgcc 505
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>gb|BT016442.1| Zea mays clone Contig275 mRNA sequence
          Length = 1443

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 33/34 (97%)
 Strand = Plus / Minus

                                              
Query: 398  accaggggaggatcttccagcgctggttgtcgcc 431
            |||| |||||||||||||||||||||||||||||
Sbjct: 1067 accaagggaggatcttccagcgctggttgtcgcc 1034



 Score = 44.1 bits (22), Expect = 0.37
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 406 aggatcttccagcgctggttgtcgcc 431
           ||||||||||||| ||||||||||||
Sbjct: 561 aggatcttccagctctggttgtcgcc 536
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>gb|BT018342.1| Zea mays clone EL01T0403C03.c mRNA sequence
          Length = 690

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 33/34 (97%)
 Strand = Plus / Minus

                                             
Query: 398 accaggggaggatcttccagcgctggttgtcgcc 431
           |||| |||||||||||||||||||||||||||||
Sbjct: 319 accaagggaggatcttccagcgctggttgtcgcc 286
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>gb|BT018000.1| Zea mays clone EL01N0526G03.c mRNA sequence
          Length = 842

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 33/34 (97%)
 Strand = Plus / Minus

                                             
Query: 398 accaggggaggatcttccagcgctggttgtcgcc 431
           |||| |||||||||||||||||||||||||||||
Sbjct: 501 accaagggaggatcttccagcgctggttgtcgcc 468
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 33/34 (97%)
 Strand = Plus / Plus

                                                  
Query: 398      accaggggaggatcttccagcgctggttgtcgcc 431
                ||||||||| ||||||||||||||||||||||||
Sbjct: 11931354 accaggggacgatcttccagcgctggttgtcgcc 11931387



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                                 
Query: 399      ccaggggaggatcttccagcgctggttgtcgcc 431
                |||||||||||||||||||| ||||||||||||
Sbjct: 11931971 ccaggggaggatcttccagcactggttgtcgcc 11932003
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 33/34 (97%)
 Strand = Plus / Plus

                                                  
Query: 398      accaggggaggatcttccagcgctggttgtcgcc 431
                ||||||||| ||||||||||||||||||||||||
Sbjct: 11928117 accaggggacgatcttccagcgctggttgtcgcc 11928150



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                                 
Query: 399      ccaggggaggatcttccagcgctggttgtcgcc 431
                |||||||||||||||||||| ||||||||||||
Sbjct: 11928734 ccaggggaggatcttccagcactggttgtcgcc 11928766
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>gb|AC126222.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBb0014I10, complete sequence
          Length = 113946

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 33/34 (97%)
 Strand = Plus / Plus

                                               
Query: 398   accaggggaggatcttccagcgctggttgtcgcc 431
             ||||||||| ||||||||||||||||||||||||
Sbjct: 32616 accaggggacgatcttccagcgctggttgtcgcc 32649



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                              
Query: 399   ccaggggaggatcttccagcgctggttgtcgcc 431
             |||||||||||||||||||| ||||||||||||
Sbjct: 33233 ccaggggaggatcttccagcactggttgtcgcc 33265
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>ref|XM_479573.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 988

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                    
Query: 407 ggatcttccagcgctggttgtcgcc 431
           |||||||||||||||||||||||||
Sbjct: 700 ggatcttccagcgctggttgtcgcc 676
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>gb|BT018086.1| Zea mays clone EL01N0552C09.c mRNA sequence
          Length = 666

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                    
Query: 407 ggatcttccagcgctggttgtcgcc 431
           |||||||||||||||||||||||||
Sbjct: 425 ggatcttccagcgctggttgtcgcc 401
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>gb|BT017376.1| Zea mays clone EL01N0325G07.c mRNA sequence
          Length = 778

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                            
Query: 399 ccaggggaggatcttccagcgctggttgtcgcc 431
           |||||| ||||||||||||| ||||||||||||
Sbjct: 691 ccagggcaggatcttccagctctggttgtcgcc 659
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>emb|Y08988.1|OSR40G3 O.sativa osr40g3 gene
          Length = 1531

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                     
Query: 407  ggatcttccagcgctggttgtcgcc 431
            |||||||||||||||||||||||||
Sbjct: 1317 ggatcttccagcgctggttgtcgcc 1293
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>dbj|AK072989.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023145K15, full
           insert sequence
          Length = 987

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                    
Query: 407 ggatcttccagcgctggttgtcgcc 431
           |||||||||||||||||||||||||
Sbjct: 699 ggatcttccagcgctggttgtcgcc 675
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>emb|BX927071.12| Zebrafish DNA sequence from clone DKEY-286O23 in linkage group 18,
             complete sequence
          Length = 143863

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 25    ggtggaagaaaaatagacaatg 46
             ||||||||||||||||||||||
Sbjct: 12388 ggtggaagaaaaatagacaatg 12409
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>gb|DQ022951.1| Triticum aestivum stress responsive protein mRNA, complete cds
          Length = 846

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 411 cttccagcgctggttgtcgcc 431
           |||||||||||||||||||||
Sbjct: 592 cttccagcgctggttgtcgcc 572
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>gb|AC108739.8| Homo sapiens 3 BAC RP11-481M14 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 96205

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 27    tggaagaaaaatagacaatgc 47
             |||||||||||||||||||||
Sbjct: 59065 tggaagaaaaatagacaatgc 59045
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>emb|CR759865.13| Zebrafish DNA sequence from clone CH211-118E11 in linkage group 18,
             complete sequence
          Length = 95664

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 26    gtggaagaaaaatagacaatg 46
             |||||||||||||||||||||
Sbjct: 87704 gtggaagaaaaatagacaatg 87684
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>ref|NM_129462.2| Arabidopsis thaliana unknown protein AT2G39050 mRNA, complete cds
          Length = 1271

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 408 gatcttccagcgctggttgtcgcc 431
           |||||||||| |||||||||||||
Sbjct: 966 gatcttccagagctggttgtcgcc 943
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>ref|NM_183466.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1093

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 409 atcttccagcgctggttgtc 428
           ||||||||||||||||||||
Sbjct: 797 atcttccagcgctggttgtc 778
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>gb|AC120856.6| Mus musculus chromosome 1, clone RP23-284B21, complete sequence
          Length = 261249

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 382   tcctggtacagcatctacca 401
             ||||||||||||||||||||
Sbjct: 62875 tcctggtacagcatctacca 62894
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>emb|BX641155.1|HSM807175 Homo sapiens mRNA; cDNA DKFZp686D23123 (from clone DKFZp686D23123)
          Length = 6710

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 24  aggtggaagaaaaatagaca 43
           ||||||||||||||||||||
Sbjct: 469 aggtggaagaaaaatagaca 488
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>emb|BX572099.1| Prochlorococcus marinus MIT9313 complete genome; segment 5/7
          Length = 349746

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 363   gatggcaatgcagcagatct 382
             ||||||||||||||||||||
Sbjct: 78899 gatggcaatgcagcagatct 78918
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>gb|AC025895.9| Homo sapiens, clone RP11-610C20, complete sequence
          Length = 179113

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 24    aggtggaagaaaaatagaca 43
             ||||||||||||||||||||
Sbjct: 85651 aggtggaagaaaaatagaca 85632
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>gb|AC005770.3| Arabidopsis thaliana chromosome 2 clone T7F6 map CIC10A06, complete
             sequence
          Length = 96827

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 408   gatcttccagcgctggttgtcgcc 431
             |||||||||| |||||||||||||
Sbjct: 77194 gatcttccagagctggttgtcgcc 77171
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>gb|AY093795.1| Arabidopsis thaliana At2g39050/T7F6.22 mRNA, complete cds
          Length = 954

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 408 gatcttccagcgctggttgtcgcc 431
           |||||||||| |||||||||||||
Sbjct: 942 gatcttccagagctggttgtcgcc 919
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>gb|AF411801.1|AF411801 Arabidopsis thaliana At2g39050/T7F6.22 mRNA, complete cds
          Length = 1209

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 408 gatcttccagcgctggttgtcgcc 431
           |||||||||| |||||||||||||
Sbjct: 966 gatcttccagagctggttgtcgcc 943
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>gb|AC157352.2| Mus musculus BAC clone RP24-483A21 from chromosome 12, complete
             sequence
          Length = 131417

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 51    tcacagagtagcacagtaca 70
             ||||||||||||||||||||
Sbjct: 69065 tcacagagtagcacagtaca 69084
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
              complete sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 409    atcttccagcgctggttgtc 428
              ||||||||||||||||||||
Sbjct: 227774 atcttccagcgctggttgtc 227755
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>emb|BX819436.1|CNS0A8S2 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB77ZF10 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1226

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 408 gatcttccagcgctggttgtcgcc 431
           |||||||||| |||||||||||||
Sbjct: 952 gatcttccagagctggttgtcgcc 929
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>gb|AC112721.3| Homo sapiens BAC clone RP11-704F14 from 2, complete sequence
          Length = 188829

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 24    aggtggaagaaaaatagaca 43
             ||||||||||||||||||||
Sbjct: 14457 aggtggaagaaaaatagaca 14438
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>gb|AY087909.1| Arabidopsis thaliana clone 39558 mRNA, complete sequence
          Length = 1186

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 408 gatcttccagcgctggttgtcgcc 431
           |||||||||| |||||||||||||
Sbjct: 966 gatcttccagagctggttgtcgcc 943
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>dbj|AP002818.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0436E04
          Length = 144644

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 409   atcttccagcgctggttgtc 428
             ||||||||||||||||||||
Sbjct: 69444 atcttccagcgctggttgtc 69425
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>gb|AC154121.6| Mus musculus chromosome 1, clone RP24-93A17, complete sequence
          Length = 228353

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 382    tcctggtacagcatctacca 401
              ||||||||||||||||||||
Sbjct: 102587 tcctggtacagcatctacca 102568
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>dbj|AK104820.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-A11, full
           insert sequence
          Length = 1093

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 409 atcttccagcgctggttgtc 428
           ||||||||||||||||||||
Sbjct: 797 atcttccagcgctggttgtc 778
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>dbj|AK104555.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-305-F10, full
           insert sequence
          Length = 1088

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 409 atcttccagcgctggttgtc 428
           ||||||||||||||||||||
Sbjct: 794 atcttccagcgctggttgtc 775
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>dbj|AK071375.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023095C18, full
            insert sequence
          Length = 1392

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 409  atcttccagcgctggttgtc 428
            ||||||||||||||||||||
Sbjct: 1080 atcttccagcgctggttgtc 1061
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>dbj|AK060132.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-C04, full
           insert sequence
          Length = 1220

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 409 atcttccagcgctggttgtc 428
           ||||||||||||||||||||
Sbjct: 837 atcttccagcgctggttgtc 818
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>emb|AL627073.15| Mouse DNA sequence from clone RP23-234E14 on chromosome 4, complete
             sequence
          Length = 137991

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 381   ctcctggtacagcatctacc 400
             ||||||||||||||||||||
Sbjct: 85405 ctcctggtacagcatctacc 85386


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,125,513
Number of Sequences: 3902068
Number of extensions: 3125513
Number of successful extensions: 52879
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 52728
Number of HSP's gapped (non-prelim): 151
length of query: 431
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 409
effective length of database: 17,147,199,772
effective search space: 7013204706748
effective search space used: 7013204706748
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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