>FXYD4_RAT (Q63113) FXYD domain-containing ion transport regulator 4 precursor|
           (Channel-inducing factor) (CHIF) (Corticosteroid-induced
           protein)
          Length = 87

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -1

Query: 368 SCRCQCHRTRNTPSALPSPVAPST*PGSTT 279
           S +C+C R  +TPS+LP  V P   PGS +
Sbjct: 58  SGKCKCRRN-HTPSSLPEKVTPLITPGSAS 86

>NFASC_HUMAN (O94856) Neurofascin precursor|
          Length = 1347

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 20/58 (34%), Positives = 27/58 (46%)
 Frame = -1

Query: 392  STMPVSSRSCRCQCHRTRNTPSALPSPVAPST*PGSTTAACRG*TSRGATTSRDSPTT 219
            +T  VSS         T  T   +   VAP+T   +TT A    T+  ATT+ +SP T
Sbjct: 1046 ATGAVSSTDATAIAATTEATTVPIIPTVAPTTIATTTTVATTTTTTAAATTTTESPPT 1103

>MAP1B_HUMAN (P46821) Microtubule-associated protein 1B (MAP 1B) [Contains: MAP1|
            light chain LC1]
          Length = 2468

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 20/52 (38%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
 Frame = -2

Query: 283  PRPPAADERAVEPQLLETHQQLNKMTTKDL----ATKN*PRRTLPSSPVNVS 140
            P P   D   V+P+ L   Q L K   KDL     TK    +T  SSPV  S
Sbjct: 2210 PSPRHPDVSMVDPEALAIEQNLGKALKKDLKEKTKTKKPGTKTKSSSPVKKS 2261

>ZNF71_HUMAN (Q9NQZ8) Endothelial zinc finger protein induced by tumor necrosis|
           factor alpha (Zinc finger protein 71) (ZNF47)
          Length = 489

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = +1

Query: 31  NGHLSQRRRRNIRKGTYRIDQTTLITSKTGKLSMHEEKH*QES*VTCGE 177
           N HL++ +R +  +  Y   +     +K+  L++H+  H  E    CGE
Sbjct: 282 NMHLTEHQRTHTGEKPYACKECGKAFNKSSSLTLHQRNHTGEKPYVCGE 330

>MAP1B_RAT (P15205) Microtubule-associated protein 1B (MAP 1B) (Neuraxin)|
            [Contains: MAP1 light chain LC1]
          Length = 2459

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
 Frame = -2

Query: 283  PRPPAADERAVEPQLLETHQQLNKMTTKDL----ATKN*PRRTLPSSPV 149
            P P   D   V+P+ L   Q L K   KDL     TK    +T  SSPV
Sbjct: 2201 PSPRHPDVSMVDPEALAIEQNLGKALKKDLKEKAKTKKPGTKTKSSSPV 2249

>CNTN1_CHICK (P14781) Contactin-1 precursor (Neural cell recognition molecule|
           F11)
          Length = 1010

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 12/37 (32%), Positives = 24/37 (64%)
 Frame = +3

Query: 48  EKKKKYPKRNIQDRSNDPNYVKDREIKHA*RETLTGE 158
           EK+ ++ +RN+  +SN    +K+ +++HA R T T +
Sbjct: 541 EKEHEHYERNVMIKSNGELLIKNVQLRHAGRYTCTAQ 577

>IF2_BRAJA (Q89WA9) Translation initiation factor IF-2|
          Length = 902

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 16/36 (44%), Positives = 20/36 (55%)
 Frame = -1

Query: 320 PSPVAPST*PGSTTAACRG*TSRGATTSRDSPTTQQ 213
           P P AP+  PG+TT      T  G TT+R + TT Q
Sbjct: 194 PRPGAPAARPGTTT------TRPGTTTARPATTTAQ 223

>MAP1B_MOUSE (P14873) Microtubule-associated protein 1B (MAP 1B) (MAP1.2)|
            (MAP1(X)) [Contains: MAP1 light chain LC1]
          Length = 2464

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 19/49 (38%), Positives = 21/49 (42%), Gaps = 4/49 (8%)
 Frame = -2

Query: 283  PRPPAADERAVEPQLLETHQQLNKMTTKDL----ATKN*PRRTLPSSPV 149
            P P   D   V+P  L   Q L K   KDL     TK    +T  SSPV
Sbjct: 2206 PSPRHPDVSMVDPDALAVDQNLGKAVKKDLKEKTKTKKPGTKTKSSSPV 2254

>PDPK1_RAT (O55173) 3-phosphoinositide-dependent protein kinase 1 (EC|
           2.7.11.1) (Protein kinase B kinase) (PkB kinase)
          Length = 559

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = -1

Query: 386 MPVSSRSCRCQCHRTRNTPSALPSPVAPST*PGSTTAACRG*TSRGATTSRDSPTT 219
           +P+ S    C C     +PS + S   PS+ PG  +   R  ++   TT+   P+T
Sbjct: 12  VPIQSSVVLCSCP----SPSMVRSQTEPSSSPGIPSGVSRQGSTMDGTTAEARPST 63

>JAD1D_PANTR (Q5XUN4) Jumonji/ARID domain-containing protein 1D (SmcY protein)|
          Length = 1535

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -1

Query: 341  RNTPSALPSPVAPST*PGSTTAAC 270
            R T SA PSP+APS    S T+ C
Sbjct: 1152 RRTNSAKPSPLAPSLMASSPTSIC 1175

>DNL1_RAT (Q9JHY8) DNA ligase 1 (EC 6.5.1.1) (DNA ligase I)|
           (Polydeoxyribonucleotide synthase [ATP] 1)
          Length = 918

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 54  KKKYPKRNIQDRSNDPNYVKDREIKHA*RE 143
           +K+ PKR IQD   +PN  K + +K   +E
Sbjct: 126 RKQLPKRTIQDTLEEPNEDKAKAVKKRKKE 155

>FXYD4_MOUSE (Q9D2W0) FXYD domain-containing ion transport regulator 4 precursor|
           (Channel-inducing factor) (CHIF)
          Length = 88

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -1

Query: 368 SCRCQCHRTRNTPSALPSPVAPST*PGS 285
           S +C+C RT   PS+LP    P   PGS
Sbjct: 58  SGKCKCRRTHK-PSSLPGKATPLIIPGS 84

>KPC1_CANAL (P43057) Protein kinase C-like 1 (EC 2.7.11.13) (PKC 1)|
          Length = 1097

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +3

Query: 24  TSQRASFTEKK-KKYPKRNIQDRSNDPNYVKDREIKHA*RETLTGEL 161
           + QR    EK  KKY K +I D   D +Y      KH+ R+ LTG L
Sbjct: 163 SDQRIQLLEKALKKYQKFSINDHEFDRDYEIMDSTKHS-RKLLTGRL 208

>CR026_HUMAN (Q8N1N2) Protein C18orf26|
          Length = 210

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = -1

Query: 335 TPSALPSPVAPST*PGSTTAACRG*TSRGATTSRDSPTTQQDDH 204
           +P+  P+    ST P ST       T+  ATTS +  T    DH
Sbjct: 166 SPACPPTMTTTSTVPASTATESTTSTATAATTSTEPITVAPTDH 209

>JAD1D_HUMAN (Q9BY66) Jumonji/ARID domain-containing protein 1D (SmcY protein)|
            (Histocompatibility Y antigen) (H-Y)
          Length = 1539

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -1

Query: 341  RNTPSALPSPVAPST*PGSTTAAC 270
            R T SA PSP+APS    S T+ C
Sbjct: 1152 RRTNSAKPSPLAPSLMASSPTSIC 1175

>JAD1C_HUMAN (P41229) Jumonji/ARID domain-containing protein 1C (SmcX protein)|
            (Xe169 protein)
          Length = 1560

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = -1

Query: 341  RNTPSALPSPVAPST*PGSTTAAC 270
            R T SA PSP+A S+   STT+ C
Sbjct: 1165 RRTNSAKPSPLASSSTASSTTSIC 1188

>SDK_CAEEL (Q9N3X8) Protein sidekick homolog precursor (Neuronal IgCAM protein|
            4)
          Length = 2325

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = +1

Query: 31   NGHLSQRRRRNIRKGTYRIDQTTLITS 111
            NG++SQR RRN  KG     QT   TS
Sbjct: 1920 NGYVSQRPRRNEIKGAKSAAQTAAATS 1946


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,091,271
Number of Sequences: 219361
Number of extensions: 979623
Number of successful extensions: 2577
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 2473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2577
length of database: 80,573,946
effective HSP length: 110
effective length of database: 56,444,236
effective search space used: 1354661664
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)