ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet115h08 |
|---|---|
| Clone Library Name | barley_pub |
>UBC2_WHEAT (P25866) Ubiquitin-conjugating enzyme E2-17 kDa (EC 6.3.2.19)| (Ubiquitin-protein ligase) (Ubiquitin carrier protein) Length = 152 Score = 62.4 bits (150), Expect = 4e-10 Identities = 28/30 (93%), Positives = 30/30 (100%) Frame = -2 Query: 420 NSEAARMFSENKREYNRKVREIVEQSWTAD 331 NSEAARM+SENKREYNRKVRE+VEQSWTAD Sbjct: 123 NSEAARMYSENKREYNRKVREVVEQSWTAD 152
>UBC2_MEDSA (P35130) Ubiquitin-conjugating enzyme E2-17 kDa (EC 6.3.2.19)| (Ubiquitin-protein ligase) (Ubiquitin carrier protein) Length = 152 Score = 62.4 bits (150), Expect = 4e-10 Identities = 28/30 (93%), Positives = 30/30 (100%) Frame = -2 Query: 420 NSEAARMFSENKREYNRKVREIVEQSWTAD 331 NSEAARMFSENKREYNR+VRE+VEQSWTAD Sbjct: 123 NSEAARMFSENKREYNRRVREVVEQSWTAD 152
>UBC2_ARATH (P42745) Ubiquitin-conjugating enzyme E2-17 kDa 2 (EC 6.3.2.19)| (Ubiquitin-protein ligase 2) (Ubiquitin carrier protein 2) Length = 152 Score = 60.5 bits (145), Expect = 2e-09 Identities = 27/30 (90%), Positives = 30/30 (100%) Frame = -2 Query: 420 NSEAARMFSENKREYNRKVREIVEQSWTAD 331 NSEAARMFSE+KREYNR+VRE+VEQSWTAD Sbjct: 123 NSEAARMFSESKREYNRRVREVVEQSWTAD 152
>UBC1_ARATH (P25865) Ubiquitin-conjugating enzyme E2-17 kDa 1 (EC 6.3.2.19)| (Ubiquitin-protein ligase 1) (Ubiquitin carrier protein 1) Length = 152 Score = 58.2 bits (139), Expect = 8e-09 Identities = 25/30 (83%), Positives = 30/30 (100%) Frame = -2 Query: 420 NSEAARMFSENKREYNRKVREIVEQSWTAD 331 NSEAARM+SE+KREYNR+VR++VEQSWTAD Sbjct: 123 NSEAARMYSESKREYNRRVRDVVEQSWTAD 152
>UBC3_ARATH (P42746) Ubiquitin-conjugating enzyme E2-17 kDa 3 (EC 6.3.2.19)| (Ubiquitin-protein ligase 3) (Ubiquitin carrier protein 3) Length = 150 Score = 49.3 bits (116), Expect = 4e-06 Identities = 23/27 (85%), Positives = 26/27 (96%) Frame = -2 Query: 420 NSEAARMFSENKREYNRKVREIVEQSW 340 N+EAAR+FSENKREYNRKV EIVEQS+ Sbjct: 123 NAEAARLFSENKREYNRKVIEIVEQSY 149
>UBE2B_RAT (P63149) Ubiquitin-conjugating enzyme E2 B (EC 6.3.2.19)| (Ubiquitin-protein ligase B) (Ubiquitin carrier protein B) (HR6B) (E2(14k)) Length = 152 Score = 42.4 bits (98), Expect = 5e-04 Identities = 17/27 (62%), Positives = 23/27 (85%) Frame = -2 Query: 420 NSEAARMFSENKREYNRKVREIVEQSW 340 NS+AA+++ ENKREY ++V IVEQSW Sbjct: 123 NSQAAQLYQENKREYEKRVSAIVEQSW 149
>UBE2B_RABIT (P63148) Ubiquitin-conjugating enzyme E2 B (EC 6.3.2.19)| (Ubiquitin-protein ligase B) (Ubiquitin carrier protein B) (HR6B) (E2(14k)) Length = 152 Score = 42.4 bits (98), Expect = 5e-04 Identities = 17/27 (62%), Positives = 23/27 (85%) Frame = -2 Query: 420 NSEAARMFSENKREYNRKVREIVEQSW 340 NS+AA+++ ENKREY ++V IVEQSW Sbjct: 123 NSQAAQLYQENKREYEKRVSAIVEQSW 149
>UBE2B_MOUSE (P63147) Ubiquitin-conjugating enzyme E2 B (EC 6.3.2.19)| (Ubiquitin-protein ligase B) (Ubiquitin carrier protein B) (HR6B) (E214K) Length = 152 Score = 42.4 bits (98), Expect = 5e-04 Identities = 17/27 (62%), Positives = 23/27 (85%) Frame = -2 Query: 420 NSEAARMFSENKREYNRKVREIVEQSW 340 NS+AA+++ ENKREY ++V IVEQSW Sbjct: 123 NSQAAQLYQENKREYEKRVSAIVEQSW 149
>UBE2B_HUMAN (P63146) Ubiquitin-conjugating enzyme E2 B (EC 6.3.2.19)| (Ubiquitin-protein ligase B) (Ubiquitin carrier protein B) (HR6B) (hHR6B) (E2-17 kDa) Length = 152 Score = 42.4 bits (98), Expect = 5e-04 Identities = 17/27 (62%), Positives = 23/27 (85%) Frame = -2 Query: 420 NSEAARMFSENKREYNRKVREIVEQSW 340 NS+AA+++ ENKREY ++V IVEQSW Sbjct: 123 NSQAAQLYQENKREYEKRVSAIVEQSW 149
>UBE2A_MOUSE (Q9Z255) Ubiquitin-conjugating enzyme E2 A (EC 6.3.2.19)| (Ubiquitin-protein ligase A) (Ubiquitin carrier protein A) (HR6A) (mHR6A) Length = 152 Score = 42.4 bits (98), Expect = 5e-04 Identities = 17/27 (62%), Positives = 23/27 (85%) Frame = -2 Query: 420 NSEAARMFSENKREYNRKVREIVEQSW 340 NS+AA+++ ENKREY ++V IVEQSW Sbjct: 123 NSQAAQLYQENKREYEKRVSAIVEQSW 149
>UBE2A_HUMAN (P49459) Ubiquitin-conjugating enzyme E2 A (EC 6.3.2.19)| (Ubiquitin-protein ligase A) (Ubiquitin carrier protein A) (HR6A) (hHR6A) Length = 152 Score = 42.4 bits (98), Expect = 5e-04 Identities = 17/27 (62%), Positives = 23/27 (85%) Frame = -2 Query: 420 NSEAARMFSENKREYNRKVREIVEQSW 340 NS+AA+++ ENKREY ++V IVEQSW Sbjct: 123 NSQAAQLYQENKREYEKRVSAIVEQSW 149
>UBC1_CAEEL (P52478) Ubiquitin-conjugating enzyme E2 1 (EC 6.3.2.19)| (Ubiquitin-protein ligase 1) (Ubiquitin carrier protein 1) Length = 192 Score = 41.2 bits (95), Expect = 0.001 Identities = 16/27 (59%), Positives = 24/27 (88%) Frame = -2 Query: 420 NSEAARMFSENKREYNRKVREIVEQSW 340 NS AA+++ EN+REY ++V++IVEQSW Sbjct: 123 NSLAAQLYQENRREYEKRVQQIVEQSW 149
>UBC2_USTMA (Q4PFA5) Ubiquitin-conjugating enzyme E2 2 (EC 6.3.2.19)| (Ubiquitin-protein ligase UBC2) (Ubiquitin carrier protein UBC2) Length = 185 Score = 38.5 bits (88), Expect = 0.007 Identities = 19/41 (46%), Positives = 26/41 (63%) Frame = -2 Query: 420 NSEAARMFSENKREYNRKVREIVEQSWTAD*GRGRGPLPES 298 N+EAA ++ EN +EY R+V+ VE SW D G +PES Sbjct: 123 NAEAASLYRENMKEYVRRVKATVEASWLDD-----GEMPES 158
>UBC2_SCHPO (P23566) Ubiquitin-conjugating enzyme E2 2 (EC 6.3.2.19)| (Ubiquitin-protein ligase ubc2) (Ubiquitin carrier protein ubc2) (RAD6 homolog) Length = 151 Score = 38.5 bits (88), Expect = 0.007 Identities = 16/27 (59%), Positives = 22/27 (81%) Frame = -2 Query: 420 NSEAARMFSENKREYNRKVREIVEQSW 340 N+EAA++ ENK+EY R+VR+ VE SW Sbjct: 123 NAEAAQLHRENKKEYVRRVRKTVEDSW 149
>UBC2_TRIHA (Q58FS2) Ubiquitin-conjugating enzyme E2 2 (EC 6.3.2.19)| (Ubiquitin-protein ligase UBC2) (Ubiquitin carrier protein UBC2) Length = 151 Score = 37.4 bits (85), Expect = 0.015 Identities = 14/27 (51%), Positives = 22/27 (81%) Frame = -2 Query: 420 NSEAARMFSENKREYNRKVREIVEQSW 340 N EA+ ++ +N+REY ++VRE VE+SW Sbjct: 123 NVEASNLYKDNRREYIKRVRETVERSW 149
>UBC2_NECHA (P78717) Ubiquitin-conjugating enzyme E2 2 (EC 6.3.2.19)| (Ubiquitin-protein ligase UBC2) (Ubiquitin carrier protein UBC2) (Radiation sensitivity protein 6) Length = 151 Score = 37.4 bits (85), Expect = 0.015 Identities = 13/27 (48%), Positives = 22/27 (81%) Frame = -2 Query: 420 NSEAARMFSENKREYNRKVREIVEQSW 340 N EA+ ++ +N++EY ++VRE VE+SW Sbjct: 123 NVEASNLYKDNRKEYTKRVRETVEKSW 149
>UBC2_ASPFU (Q4WLA7) Ubiquitin-conjugating enzyme E2 2 (EC 6.3.2.19)| (Ubiquitin-protein ligase ubc2) (Ubiquitin carrier protein ubc2) Length = 151 Score = 36.2 bits (82), Expect = 0.032 Identities = 13/27 (48%), Positives = 22/27 (81%) Frame = -2 Query: 420 NSEAARMFSENKREYNRKVREIVEQSW 340 N EA+ ++ +N++EY ++VRE VE+SW Sbjct: 123 NVEASNLYKDNRKEYIKRVRETVEKSW 149
>UBC2_CRYNE (Q5KN22) Ubiquitin-conjugating enzyme E2 2 (EC 6.3.2.19)| (Ubiquitin-protein ligase UBC2) (Ubiquitin carrier protein UBC2) Length = 169 Score = 35.8 bits (81), Expect = 0.042 Identities = 14/27 (51%), Positives = 21/27 (77%) Frame = -2 Query: 420 NSEAARMFSENKREYNRKVREIVEQSW 340 N +AA++F EN +EY R+V++ VE SW Sbjct: 123 NVDAAQLFKENLKEYERRVKKTVELSW 149
>UBC2_EMENI (Q96UP5) Ubiquitin-conjugating enzyme E2 2 (EC 6.3.2.19)| (Ubiquitin-protein ligase ubc2) (Ubiquitin carrier protein ubc2) (UV sensitivity protein J) Length = 151 Score = 35.8 bits (81), Expect = 0.042 Identities = 13/27 (48%), Positives = 22/27 (81%) Frame = -2 Query: 420 NSEAARMFSENKREYNRKVREIVEQSW 340 N EA+ ++ +N++EY ++VRE VE+SW Sbjct: 123 NVEASNLYRDNRKEYIKRVRETVEKSW 149
>UBCD6_DROME (P25153) Ubiquitin-conjugating enzyme E2-17 kDa (EC 6.3.2.19)| (Ubiquitin-protein ligase) (Ubiquitin carrier protein) Length = 151 Score = 35.4 bits (80), Expect = 0.055 Identities = 14/27 (51%), Positives = 22/27 (81%) Frame = -2 Query: 420 NSEAARMFSENKREYNRKVREIVEQSW 340 NS AA+++ EN+REY ++V+ VEQS+ Sbjct: 123 NSTAAQLYKENRREYEKRVKACVEQSF 149
>UBC2_YEAST (P06104) Ubiquitin-conjugating enzyme E2 2 (EC 6.3.2.19)| (Ubiquitin-protein ligase UBC2) (Ubiquitin carrier protein UBC2) (Radiation sensitivity protein 6) Length = 172 Score = 35.0 bits (79), Expect = 0.072 Identities = 14/30 (46%), Positives = 22/30 (73%) Frame = -2 Query: 420 NSEAARMFSENKREYNRKVREIVEQSWTAD 331 N EAA +F ++K +Y ++V+E VE+SW D Sbjct: 123 NVEAATLFKDHKSQYVKRVKETVEKSWEDD 152
>UBC2_ASHGO (Q75EB8) Ubiquitin-conjugating enzyme E2 2 (EC 6.3.2.19)| (Ubiquitin-protein ligase UBC2) (Ubiquitin carrier protein UBC2) Length = 170 Score = 35.0 bits (79), Expect = 0.072 Identities = 14/30 (46%), Positives = 22/30 (73%) Frame = -2 Query: 420 NSEAARMFSENKREYNRKVREIVEQSWTAD 331 N EAA +F ++K +Y ++V+E VE+SW D Sbjct: 123 NVEAATLFKDHKSQYVKRVKETVEKSWEDD 152
>UBC2_KLULA (Q6CUD9) Ubiquitin-conjugating enzyme E2 2 (EC 6.3.2.19)| (Ubiquitin-protein ligase UBC2) (Ubiquitin carrier protein UBC2) Length = 164 Score = 35.0 bits (79), Expect = 0.072 Identities = 14/30 (46%), Positives = 22/30 (73%) Frame = -2 Query: 420 NSEAARMFSENKREYNRKVREIVEQSWTAD 331 N EAA +F ++K +Y ++V+E VE+SW D Sbjct: 123 NVEAATLFQDHKSQYVKRVKETVEKSWEDD 152
>UBC2_DEBHA (Q6BU36) Ubiquitin-conjugating enzyme E2 2 (EC 6.3.2.19)| (Ubiquitin-protein ligase UBC2) (Ubiquitin carrier protein UBC2) Length = 168 Score = 34.7 bits (78), Expect = 0.094 Identities = 13/30 (43%), Positives = 21/30 (70%) Frame = -2 Query: 420 NSEAARMFSENKREYNRKVREIVEQSWTAD 331 N EAA ++ +++ +Y ++VRE VE SW D Sbjct: 123 NVEAANLYKDHRSQYIKRVRETVENSWNED 152
>UBC2_CANGA (Q6FR76) Ubiquitin-conjugating enzyme E2 2 (EC 6.3.2.19)| (Ubiquitin-protein ligase UBC2) (Ubiquitin carrier protein UBC2) Length = 167 Score = 33.9 bits (76), Expect = 0.16 Identities = 13/27 (48%), Positives = 21/27 (77%) Frame = -2 Query: 420 NSEAARMFSENKREYNRKVREIVEQSW 340 N EAA +F ++K +Y ++V+E VE+SW Sbjct: 123 NVEAATLFKDHKSQYIKRVKETVEKSW 149
>NU5M_LOCMI (Q36428) NADH-ubiquinone oxidoreductase chain 5 (EC 1.6.5.3) (NADH| dehydrogenase subunit 5) Length = 572 Score = 33.5 bits (75), Expect = 0.21 Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 4/63 (6%) Frame = -1 Query: 271 FMALNS-CFSDETLNISSDCLVGQSIFSGWFS---VVILCCVSWYCSFMLYCRSCLVNLG 104 FM L S CF N+SS CL G +G++S ++ + C+SW F+ + L Sbjct: 332 FMPLTSICF-----NVSSLCLCGMPFLAGFYSKDLILEIVCLSWVNFFIFFLYFFSTGLT 386 Query: 103 ASY 95 ASY Sbjct: 387 ASY 389
>UBC2_NEUCR (P52493) Ubiquitin-conjugating enzyme E2 2 (EC 6.3.2.19)| (Ubiquitin-protein ligase ubc2) (Ubiquitin carrier protein ubc2) (Mutagen-sensitive protein 8) Length = 151 Score = 33.5 bits (75), Expect = 0.21 Identities = 11/27 (40%), Positives = 21/27 (77%) Frame = -2 Query: 420 NSEAARMFSENKREYNRKVREIVEQSW 340 N + ++ +N++EY+++VRE VE+SW Sbjct: 123 NVAPSNLYKDNRKEYHKRVRETVEKSW 149
>UBC2_CANAL (O74201) Ubiquitin-conjugating enzyme E2 2 (EC 6.3.2.19)| (Ubiquitin-protein ligase UBC2) (Ubiquitin carrier protein UBC2) (Radiation sensitivity protein 6) Length = 179 Score = 32.3 bits (72), Expect = 0.47 Identities = 13/30 (43%), Positives = 20/30 (66%) Frame = -2 Query: 420 NSEAARMFSENKREYNRKVREIVEQSWTAD 331 N EAA ++ +++ Y ++VRE VE SW D Sbjct: 123 NVEAANLYKDHRSLYVKRVRETVENSWNDD 152
>DPOE_CANGA (Q6FNY7) DNA polymerase epsilon, catalytic subunit A (EC 2.7.7.7)| (DNA polymerase II subunit A) Length = 2217 Score = 29.3 bits (64), Expect = 3.9 Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 6/73 (8%) Frame = +3 Query: 141 KEQYHETQHKITTENQPLKIL*PTKQSLEMFNVSSEKQLLRAINKGFMV------AYCNF 302 KEQYH+ + +IT N+ + + + + + +K+L +AIN+ F + Sbjct: 1530 KEQYHKRKDRITKFNKYINL--SDNVDMNSNHYTDKKKLFKAINQEFAMIKEQKGQQVLL 1587 Query: 303 LAMAPFPCLSQQS 341 L +PFP L +++ Sbjct: 1588 LMQSPFPSLIKKN 1600
>NTCP2_HUMAN (Q12908) Ileal sodium/bile acid cotransporter (Ileal Na(+)/bile| acid cotransporter) (Na(+)-dependent ileal bile acid transporter) (Ileal sodium-dependent bile acid transporter) (ISBT) (IBAT) (Apical sodium-dependent bile acid transporter) (AS Length = 348 Score = 28.9 bits (63), Expect = 5.2 Identities = 13/51 (25%), Positives = 27/51 (52%) Frame = -1 Query: 259 NSCFSDETLNISSDCLVGQSIFSGWFSVVILCCVSWYCSFMLYCRSCLVNL 107 NSC + T+ + C+V +S F+ SVV+ ++ + +++ C V + Sbjct: 5 NSCVDNATVCSGASCVVPESNFNNILSVVLSTVLTILLALVMFSMGCNVEI 55
>UBC12_CAEEL (Q9XVK5) NEDD8-conjugating enzyme ubc-12 (EC 6.3.2.-) (NEDD8| protein ligase) (NEDD8 carrier protein) (Ubiquitin-conjugating enzyme E2 12) Length = 180 Score = 28.9 bits (63), Expect = 5.2 Identities = 10/25 (40%), Positives = 19/25 (76%) Frame = -2 Query: 420 NSEAARMFSENKREYNRKVREIVEQ 346 N +AA+M+S+N+ +N +VRE + + Sbjct: 154 NIQAAQMWSQNRESFNHRVREYISR 178
>CYAA_USTMA (P49606) Adenylate cyclase (EC 4.6.1.1) (ATP pyrophosphate-lyase)| (Adenylyl cyclase) Length = 2493 Score = 28.5 bits (62), Expect = 6.7 Identities = 17/28 (60%), Positives = 19/28 (67%) Frame = +2 Query: 293 LQLSGNGPLPLP*SAVQLCSTISRTLRL 376 L LSGN LP VQLCS++ RTLRL Sbjct: 1114 LDLSGNPMSDLPLDFVQLCSSL-RTLRL 1140
>ITSN2_MOUSE (Q9Z0R6) Intersectin-2 (SH3 domain-containing protein 1B) (EH and| SH3 domains protein 2) (EH domain and SH3 domain regulator of endocytosis 2) Length = 1658 Score = 28.5 bits (62), Expect = 6.7 Identities = 12/25 (48%), Positives = 15/25 (60%) Frame = -2 Query: 414 EAARMFSENKREYNRKVREIVEQSW 340 EA R + K E+ RK RE+ EQ W Sbjct: 392 EAERKAQKEKEEWERKQRELQEQEW 416
>CLD5_RAT (Q9JKD6) Claudin-5| Length = 218 Score = 28.5 bits (62), Expect = 6.7 Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 7/43 (16%) Frame = -1 Query: 250 FSDETLNISSDCLVGQSIFSGWFSVVIL-------CCVSWYCS 143 F D T+ +S +G +++ GW + +L CC +W C+ Sbjct: 147 FYDPTVPVSQKYELGAALYIGWAASALLMCGGGLVCCGAWVCT 189
>CLD5_MOUSE (O54942) Claudin-5 (Brain endothelial cell clone 1 protein)| (Lung-specific membrane protein) Length = 218 Score = 28.5 bits (62), Expect = 6.7 Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 7/43 (16%) Frame = -1 Query: 250 FSDETLNISSDCLVGQSIFSGWFSVVIL-------CCVSWYCS 143 F D T+ +S +G +++ GW + +L CC +W C+ Sbjct: 147 FYDPTVPVSQKYELGAALYIGWAASALLMCGGGLVCCGAWVCT 189
>ITSN2_HUMAN (Q9NZM3) Intersectin-2 (SH3 domain-containing protein 1B) (SH3P18)| (SH3P18-like WASP-associated protein) Length = 1696 Score = 28.5 bits (62), Expect = 6.7 Identities = 12/25 (48%), Positives = 15/25 (60%) Frame = -2 Query: 414 EAARMFSENKREYNRKVREIVEQSW 340 EA R + K E+ RK RE+ EQ W Sbjct: 391 EAERKAQKEKEEWERKQRELQEQEW 415 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 58,820,569 Number of Sequences: 219361 Number of extensions: 1101009 Number of successful extensions: 2567 Number of sequences better than 10.0: 36 Number of HSP's better than 10.0 without gapping: 2517 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2564 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 2286875994 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
