ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet115g11 |
|---|---|
| Clone Library Name | barley_pub |
>PSAF_HORVU (P13192) Photosystem I reaction center subunit III, chloroplast| precursor (Light-harvesting complex I 17 kDa protein) (PSI-F) Length = 235 Score = 90.5 bits (223), Expect = 9e-19 Identities = 44/44 (100%), Positives = 44/44 (100%) Frame = -3 Query: 319 AMREIIIDVELAARIIPRGFIWPVAAYRELINGDLVVDDADIGY 188 AMREIIIDVELAARIIPRGFIWPVAAYRELINGDLVVDDADIGY Sbjct: 192 AMREIIIDVELAARIIPRGFIWPVAAYRELINGDLVVDDADIGY 235
>PSAF_SPIOL (P12355) Photosystem I reaction center subunit III, chloroplast| precursor (Light-harvesting complex I 17 kDa protein) (PSI-F) Length = 231 Score = 53.1 bits (126), Expect = 2e-07 Identities = 24/34 (70%), Positives = 30/34 (88%) Frame = -3 Query: 313 REIIIDVELAARIIPRGFIWPVAAYRELINGDLV 212 +EIIIDV LA+ ++ RGF WPVAAYREL+NG+LV Sbjct: 194 KEIIIDVPLASSLLFRGFSWPVAAYRELLNGELV 227
>PSAF_FLATR (P46486) Photosystem I reaction center subunit III, chloroplast| precursor (Light-harvesting complex I 17 kDa protein) (PSI-F) Length = 232 Score = 51.6 bits (122), Expect = 5e-07 Identities = 22/34 (64%), Positives = 29/34 (85%) Frame = -3 Query: 313 REIIIDVELAARIIPRGFIWPVAAYRELINGDLV 212 +EIIIDV LA +++ RGF WPVAAYRE +NG+L+ Sbjct: 195 KEIIIDVPLATKLLFRGFSWPVAAYREYLNGELI 228
>PSAF_ODOSI (P49483) Photosystem I reaction center subunit III (PSI-F)| Length = 185 Score = 45.1 bits (105), Expect = 5e-05 Identities = 19/39 (48%), Positives = 30/39 (76%) Frame = -3 Query: 310 EIIIDVELAARIIPRGFIWPVAAYRELINGDLVVDDADI 194 EIII+V LA +I+ G+IWP++A++E I+ DLV D ++ Sbjct: 142 EIIINVPLALKIMTTGYIWPISAWQEFISNDLVALDEEV 180
>PSAF_SYNEN (P0A402) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 164 Score = 43.9 bits (102), Expect = 1e-04 Identities = 20/40 (50%), Positives = 28/40 (70%) Frame = -3 Query: 313 REIIIDVELAARIIPRGFIWPVAAYRELINGDLVVDDADI 194 +EIIIDV LA + + GF WP+AA +EL +G+L D +I Sbjct: 120 KEIIIDVPLAIKCMLTGFAWPLAALKELASGELTAKDNEI 159
>PSAF_SYNEL (P0A401) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 164 Score = 43.9 bits (102), Expect = 1e-04 Identities = 20/40 (50%), Positives = 28/40 (70%) Frame = -3 Query: 313 REIIIDVELAARIIPRGFIWPVAAYRELINGDLVVDDADI 194 +EIIIDV LA + + GF WP+AA +EL +G+L D +I Sbjct: 120 KEIIIDVPLAIKCMLTGFAWPLAALKELASGELTAKDNEI 159
>PSAF_PORPU (P51193) Photosystem I reaction center subunit III (PSI-F)| Length = 185 Score = 43.5 bits (101), Expect = 1e-04 Identities = 18/40 (45%), Positives = 28/40 (70%) Frame = -3 Query: 313 REIIIDVELAARIIPRGFIWPVAAYRELINGDLVVDDADI 194 +EII+DV LA + + GF WP+AA++E +G L+ + DI Sbjct: 141 KEIILDVPLAVKFMSSGFAWPLAAWQEFSSGQLIAPNDDI 180
>PSAF_GUITH (O78457) Photosystem I reaction center subunit III (PSI-F)| Length = 183 Score = 43.1 bits (100), Expect = 2e-04 Identities = 18/40 (45%), Positives = 28/40 (70%) Frame = -3 Query: 313 REIIIDVELAARIIPRGFIWPVAAYRELINGDLVVDDADI 194 +EIIIDV +A I G+IWP AA++E +G+L+ + +I Sbjct: 139 KEIIIDVPVALSFISTGYIWPFAAFKEFTSGNLIAKEDEI 178
>PSAF_ANAVT (P31091) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 164 Score = 43.1 bits (100), Expect = 2e-04 Identities = 19/40 (47%), Positives = 28/40 (70%) Frame = -3 Query: 313 REIIIDVELAARIIPRGFIWPVAAYRELINGDLVVDDADI 194 +EI +D+ LA II GF WP AA +EL++G+L D++I Sbjct: 120 KEIQLDLGLALPIIATGFAWPAAAVKELLSGELTAKDSEI 159
>PSAF_ANASP (P58564) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 164 Score = 42.4 bits (98), Expect = 3e-04 Identities = 18/40 (45%), Positives = 28/40 (70%) Frame = -3 Query: 313 REIIIDVELAARIIPRGFIWPVAAYRELINGDLVVDDADI 194 +EI +D+ +A II GF WP AA +EL++G+L D++I Sbjct: 120 KEIQLDLGIALPIIATGFAWPAAAVKELLSGELTAKDSEI 159
>PSAF_CYAPA (P48115) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 186 Score = 42.4 bits (98), Expect = 3e-04 Identities = 17/40 (42%), Positives = 28/40 (70%) Frame = -3 Query: 313 REIIIDVELAARIIPRGFIWPVAAYRELINGDLVVDDADI 194 +EIIID+ +A + + +GF+WP+AA +E +G L D +I Sbjct: 142 KEIIIDIPVALQSVSKGFVWPLAALQEFSSGKLTARDEEI 181
>PSAF_SYNY3 (P29256) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 165 Score = 41.2 bits (95), Expect = 7e-04 Identities = 18/41 (43%), Positives = 30/41 (73%) Frame = -3 Query: 316 MREIIIDVELAARIIPRGFIWPVAAYRELINGDLVVDDADI 194 M+E++I+V LA + + GF+WP+AA E +G LV+ D++I Sbjct: 120 MQEVVINVPLAIKKMLGGFLWPLAAVGEYTSGKLVMKDSEI 160
>PSAF_SYNP6 (P31083) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 159 Score = 38.9 bits (89), Expect = 0.003 Identities = 18/42 (42%), Positives = 27/42 (64%) Frame = -3 Query: 319 AMREIIIDVELAARIIPRGFIWPVAAYRELINGDLVVDDADI 194 A +EI+IDV LA + GF WP+AA++E +G L+ +I Sbjct: 113 AGKEIVIDVPLAVKFSLTGFAWPLAAFQEFSSGKLLAKADEI 154
>PSAF_MASLA (O31127) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 165 Score = 37.7 bits (86), Expect = 0.007 Identities = 16/40 (40%), Positives = 26/40 (65%) Frame = -3 Query: 313 REIIIDVELAARIIPRGFIWPVAAYRELINGDLVVDDADI 194 +EI I++ +A I+ GF WP AA +E ++G+L D +I Sbjct: 121 KEIQIELPIALPIMLSGFAWPAAAIKEFLSGELTAKDEEI 160
>PSAF_CHLRE (P12356) Photosystem I reaction center subunit III, chloroplast| precursor (Light-harvesting complex I 17 kDa protein) (PSI-F) (P21 protein) Length = 227 Score = 36.2 bits (82), Expect = 0.021 Identities = 18/40 (45%), Positives = 27/40 (67%) Frame = -3 Query: 313 REIIIDVELAARIIPRGFIWPVAAYRELINGDLVVDDADI 194 +EIIIDV LA ++ +G WP+AA +EL G L+ + +I Sbjct: 183 KEIIIDVPLATKLAWQGAGWPLAAVQELQRGTLLEKEENI 222
>PSAF_CYACA (Q9TLW6) Photosystem I reaction center subunit III (PSI-F)| Length = 187 Score = 35.8 bits (81), Expect = 0.028 Identities = 16/39 (41%), Positives = 24/39 (61%) Frame = -3 Query: 310 EIIIDVELAARIIPRGFIWPVAAYRELINGDLVVDDADI 194 EIIID+ A + + GF WP+ A +E NG L+ + +I Sbjct: 144 EIIIDLPRALKYMFSGFAWPILALKEFKNGSLLASNDEI 182
>PSAF_GLOVI (Q7NH05) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 181 Score = 34.3 bits (77), Expect = 0.081 Identities = 17/36 (47%), Positives = 23/36 (63%) Frame = -3 Query: 310 EIIIDVELAARIIPRGFIWPVAAYRELINGDLVVDD 203 EIIID+ A + + G IWPV A ELI+G + V + Sbjct: 138 EIIIDLPKAIKCLLLGLIWPVQAIPELISGKIRVPE 173
>PSAF_PROMA (Q9X7I4) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 183 Score = 33.5 bits (75), Expect = 0.14 Identities = 18/42 (42%), Positives = 25/42 (59%) Frame = -3 Query: 319 AMREIIIDVELAARIIPRGFIWPVAAYRELINGDLVVDDADI 194 A EIIID LA + + +G WPV A ++ +GDL D +I Sbjct: 136 AENEIIIDFALARQCLIKGAAWPVEANKQGRSGDLREKDENI 177
>RDRP_MRNV (Q6XNL5) RNA-directed RNA polymerase (EC 2.7.7.48) (RdRp) (RNA| replicase) Length = 1045 Score = 30.8 bits (68), Expect = 0.89 Identities = 16/40 (40%), Positives = 21/40 (52%) Frame = -3 Query: 157 SRSQVRWAAEDEGLWCRSVWAWCRS**DHGEMEPLLYLRN 38 S +QV + + G W VW WC D+GE LYL+N Sbjct: 217 SDNQVDYRVDGGGRWQHKVWNWC----DYGE---FLYLKN 249
>MADCA_HUMAN (Q13477) Mucosal addressin cell adhesion molecule 1 precursor| (MAdCAM-1) (hMAdCAM-1) Length = 406 Score = 29.6 bits (65), Expect = 2.0 Identities = 14/34 (41%), Positives = 17/34 (50%) Frame = +1 Query: 31 GFSFLNTREVPFLHDPISSYTKPTQIDTTSPHPP 132 G + + +P LH P T P DTTSP PP Sbjct: 212 GLELSHRQAIPVLHSP----TSPEPPDTTSPEPP 241
>YHBP_ECO57 (Q8XA94) UPF0306 protein yhbP| Length = 147 Score = 29.3 bits (64), Expect = 2.6 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%) Frame = -3 Query: 184 LAAMRAWLASRSQVRWAAEDEG-LWCRSVW 98 L A+ WLA + V W + EG LWC + + Sbjct: 4 LTAISRWLAKQHVVTWCVQQEGELWCANAF 33
>YHBP_ECOL6 (Q8FD95) UPF0306 protein yhbP| Length = 140 Score = 29.3 bits (64), Expect = 2.6 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%) Frame = -3 Query: 184 LAAMRAWLASRSQVRWAAEDEG-LWCRSVW 98 L A+ WLA + V W + EG LWC + + Sbjct: 4 LTAISRWLAKQHVVTWCVQQEGELWCANAF 33
>YHBP_SHIFL (P67763) UPF0306 protein yhbP| Length = 147 Score = 28.9 bits (63), Expect = 3.4 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%) Frame = -3 Query: 184 LAAMRAWLASRSQVRWAAEDEG-LWCRSVW 98 L A+ WLA + V W + EG LWC + + Sbjct: 4 LIAISRWLAKQHVVTWCVQQEGELWCANAF 33
>YHBP_ECOLI (P67762) UPF0306 protein yhbP| Length = 147 Score = 28.9 bits (63), Expect = 3.4 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%) Frame = -3 Query: 184 LAAMRAWLASRSQVRWAAEDEG-LWCRSVW 98 L A+ WLA + V W + EG LWC + + Sbjct: 4 LIAISRWLAKQHVVTWCVQQEGELWCANAF 33
>AGI_URTDI (P11218) Lectin/endochitinase precursor (EC 3.2.1.14) (Agglutinin)| (UDA) Length = 372 Score = 28.1 bits (61), Expect = 5.8 Identities = 10/21 (47%), Positives = 12/21 (57%) Frame = -3 Query: 118 LWCRSVWAWCRS**DHGEMEP 56 LWC S+W WC G+ EP Sbjct: 38 LWCCSIWGWC------GDSEP 52
>PPZ1_YEAST (P26570) Serine/threonine-protein phosphatase PP-Z1 (EC 3.1.3.16)| Length = 691 Score = 28.1 bits (61), Expect = 5.8 Identities = 10/17 (58%), Positives = 14/17 (82%) Frame = +3 Query: 90 HQAHTDRHHKPSSSAAH 140 H +HT+R+H PSSS +H Sbjct: 79 HSSHTNRYHFPSSSHSH 95
>YHBP_SALTY (P60822) UPF0306 protein yhbP| Length = 147 Score = 27.7 bits (60), Expect = 7.5 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 1/30 (3%) Frame = -3 Query: 184 LAAMRAWLASRSQVRWAAEDEG-LWCRSVW 98 L A+ WLA + V W EG LWC + + Sbjct: 4 LTAIGRWLAKQHVVTWCVHHEGELWCANAF 33
>YHBP_SALTI (P60821) UPF0306 protein yhbP| Length = 147 Score = 27.7 bits (60), Expect = 7.5 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 1/30 (3%) Frame = -3 Query: 184 LAAMRAWLASRSQVRWAAEDEG-LWCRSVW 98 L A+ WLA + V W EG LWC + + Sbjct: 4 LTAIGRWLAKQHVVTWCVHHEGELWCANAF 33
>DNMBP_HUMAN (Q6XZF7) Dynamin-binding protein (Scaffold protein Tuba)| Length = 1577 Score = 27.3 bits (59), Expect = 9.9 Identities = 15/30 (50%), Positives = 17/30 (56%) Frame = +2 Query: 92 PSPHRSTPQALILRCPSDLGPTSQPRTHGS 181 PS S+P RCPSD TSQPR+ S Sbjct: 1424 PSNSESSPS----RCPSDPDSTSQPRSGDS 1449 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 41,012,032 Number of Sequences: 219361 Number of extensions: 774988 Number of successful extensions: 2246 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 2082 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2243 length of database: 80,573,946 effective HSP length: 82 effective length of database: 62,586,344 effective search space used: 1502072256 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
