ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet115g11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|U08135.1|HVU08135 Hordeum vulgare photosystem-I PSI-F subunit... 597 e-168
2ref|NM_184976.1| Oryza sativa (japonica cultivar-group), mRNA 145 1e-31
3gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 145 1e-31
4gb|AC084748.11| Oryza sativa chromosome 3 BAC OSJNBa0010I09 geno... 145 1e-31
5dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 145 1e-31
6dbj|AK069791.1| Oryza sativa (japonica cultivar-group) cDNA clon... 145 1e-31
7dbj|AK060493.1| Oryza sativa (japonica cultivar-group) cDNA clon... 145 1e-31
8dbj|AK059890.1| Oryza sativa (japonica cultivar-group) cDNA clon... 145 1e-31
9gb|AY103687.1| Zea mays PCO106710 mRNA sequence 145 1e-31
10gb|AF093634.1|AF093634 Oryza sativa photosystem-1 F subunit prec... 145 1e-31
11gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete ... 42 1.1
12dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 42 1.1
13gb|AC163992.9| Mus musculus chromosome 1, clone RP23-193H10, com... 40 4.2
14gb|AC094571.8| Rattus norvegicus 20 BAC CH230-4L21 (Children's H... 40 4.2
15emb|AL392085.12| Human DNA sequence from clone RP11-225L6 on chr... 40 4.2
16emb|AL445928.8| Human DNA sequence from clone RP11-305E17 on chr... 40 4.2
17gb|AC087698.5| Homo sapiens chromosome 8, clone RP11-25K19, comp... 40 4.2
18gb|AC105282.5| Homo sapiens chromosome 18, clone RP11-452F20, co... 40 4.2
19gb|AC090152.4| Homo sapiens chromosome 8, clone RP11-554M1, comp... 40 4.2
20gb|CP000232.1| Moorella thermoacetica ATCC 39073, complete genome 40 4.2
21gb|AF139468.2|AF139468 Vigna radiata photosystem I reaction cent... 40 4.2
22emb|AL513406.1|CNS07EFT Human DNA sequence chromosome 8 of Homo ... 40 4.2
23gb|AC110518.20| Mus musculus chromosome 1, clone RP23-10P1, comp... 40 4.2
24gb|AE008384.1| Methanosarcina mazei strain Goe1, complete genome 40 4.2 
>gb|U08135.1|HVU08135 Hordeum vulgare photosystem-I PSI-F subunit precursor mRNA,
           complete cds
          Length = 990

 Score =  597 bits (301), Expect = e-168
 Identities = 316/321 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaagagagaacacaatagttatacaagattgggttcagtttcttaaatacaagagaggtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 941 gaagagagaacacaatagttatacaagattgggttcagtttcttaaatacaagagaggtt 882

                                                                       
Query: 61  ccatttctccatgatcctatcagctcctacaccaagcccacacagatcgacaccacaagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 881 ccatttctccatgatcctatcagctcctacaccaagcccacacagatcgacaccacaagc 822

                                                                       
Query: 121 cctcatcctccgctgcccatctgacttgggaccgactagccaaccacgcacgcatggcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 821 cctcatcctccgctgcccatctgacttgggaccgactagccaaccacgcacgcatggcag 762

                                                                       
Query: 181 ctagttagtagccgatgtcggcgtcgtcaacaacaaggtcgccgttgatgagctcgcggt 240
           ||| |||||||||||||||||||||||| || || |||||||||||||||||||||||||
Sbjct: 761 ctacttagtagccgatgtcggcgtcgtcgacgacgaggtcgccgttgatgagctcgcggt 702

                                                                       
Query: 241 atgcggcgacgggccaaatgaagcccctggggatgatcctggcggcgagctcgacgtcga 300
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 atgcggcgacgggccagatgaagcccctggggatgatcctggcggcgagctcgacgtcga 642

                                
Query: 301 tgatgatctccctcatggcgg 321
           |||||||||||||||||||||
Sbjct: 641 tgatgatctccctcatggcgg 621
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>ref|NM_184976.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1038

 Score =  145 bits (73), Expect = 1e-31
 Identities = 118/133 (88%)
 Strand = Plus / Minus

                                                                       
Query: 187 agtagccgatgtcggcgtcgtcaacaacaaggtcgccgttgatgagctcgcggtatgcgg 246
           ||||||||||||| |||||||| || || |||| |||| |||||||||| ||||| ||||
Sbjct: 778 agtagccgatgtcagcgtcgtcgacgacgaggttgccggtgatgagctcacggtaggcgg 719

                                                                       
Query: 247 cgacgggccaaatgaagcccctggggatgatcctggcggcgagctcgacgtcgatgatga 306
           |||||||||| ||||| ||||| |||| || | || ||||||||||||||||||||||||
Sbjct: 718 cgacgggccagatgaaccccctcgggaggagcttgacggcgagctcgacgtcgatgatga 659

                        
Query: 307 tctccctcatggc 319
           |||||||||||||
Sbjct: 658 tctccctcatggc 646



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 49/55 (89%)
 Strand = Plus / Minus

                                                                  
Query: 39  tttcttaaatacaagagaggttccatttctccatgatcctatcagctcctacacc 93
           |||||||| ||||| |||  ||||||| ||||||||||||||||||| |||||||
Sbjct: 921 tttcttaagtacaacagatcttccattcctccatgatcctatcagcttctacacc 867
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  145 bits (73), Expect = 1e-31
 Identities = 118/133 (88%)
 Strand = Plus / Plus

                                                                            
Query: 187      agtagccgatgtcggcgtcgtcaacaacaaggtcgccgttgatgagctcgcggtatgcgg 246
                ||||||||||||| |||||||| || || |||| |||| |||||||||| ||||| ||||
Sbjct: 31969474 agtagccgatgtcagcgtcgtcgacgacgaggttgccggtgatgagctcacggtaggcgg 31969533

                                                                            
Query: 247      cgacgggccaaatgaagcccctggggatgatcctggcggcgagctcgacgtcgatgatga 306
                |||||||||| ||||| ||||| |||| || | || ||||||||||||||||||||||||
Sbjct: 31969534 cgacgggccagatgaaccccctcgggaggagcttgacggcgagctcgacgtcgatgatga 31969593

                             
Query: 307      tctccctcatggc 319
                |||||||||||||
Sbjct: 31969594 tctccctcatggc 31969606



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 49/55 (89%)
 Strand = Plus / Plus

                                                                       
Query: 39       tttcttaaatacaagagaggttccatttctccatgatcctatcagctcctacacc 93
                |||||||| ||||| |||  ||||||| ||||||||||||||||||| |||||||
Sbjct: 31969219 tttcttaagtacaacagatcttccattcctccatgatcctatcagcttctacacc 31969273
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>gb|AC084748.11| Oryza sativa chromosome 3 BAC OSJNBa0010I09 genomic sequence, complete
             sequence
          Length = 144306

 Score =  145 bits (73), Expect = 1e-31
 Identities = 118/133 (88%)
 Strand = Plus / Plus

                                                                         
Query: 187   agtagccgatgtcggcgtcgtcaacaacaaggtcgccgttgatgagctcgcggtatgcgg 246
             ||||||||||||| |||||||| || || |||| |||| |||||||||| ||||| ||||
Sbjct: 61426 agtagccgatgtcagcgtcgtcgacgacgaggttgccggtgatgagctcacggtaggcgg 61485

                                                                         
Query: 247   cgacgggccaaatgaagcccctggggatgatcctggcggcgagctcgacgtcgatgatga 306
             |||||||||| ||||| ||||| |||| || | || ||||||||||||||||||||||||
Sbjct: 61486 cgacgggccagatgaaccccctcgggaggagcttgacggcgagctcgacgtcgatgatga 61545

                          
Query: 307   tctccctcatggc 319
             |||||||||||||
Sbjct: 61546 tctccctcatggc 61558



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 49/55 (89%)
 Strand = Plus / Plus

                                                                    
Query: 39    tttcttaaatacaagagaggttccatttctccatgatcctatcagctcctacacc 93
             |||||||| ||||| |||  ||||||| ||||||||||||||||||| |||||||
Sbjct: 61171 tttcttaagtacaacagatcttccattcctccatgatcctatcagcttctacacc 61225
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  145 bits (73), Expect = 1e-31
 Identities = 118/133 (88%)
 Strand = Plus / Plus

                                                                            
Query: 187      agtagccgatgtcggcgtcgtcaacaacaaggtcgccgttgatgagctcgcggtatgcgg 246
                ||||||||||||| |||||||| || || |||| |||| |||||||||| ||||| ||||
Sbjct: 32059986 agtagccgatgtcagcgtcgtcgacgacgaggttgccggtgatgagctcacggtaggcgg 32060045

                                                                            
Query: 247      cgacgggccaaatgaagcccctggggatgatcctggcggcgagctcgacgtcgatgatga 306
                |||||||||| ||||| ||||| |||| || | || ||||||||||||||||||||||||
Sbjct: 32060046 cgacgggccagatgaaccccctcgggaggagcttgacggcgagctcgacgtcgatgatga 32060105

                             
Query: 307      tctccctcatggc 319
                |||||||||||||
Sbjct: 32060106 tctccctcatggc 32060118



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 49/55 (89%)
 Strand = Plus / Plus

                                                                       
Query: 39       tttcttaaatacaagagaggttccatttctccatgatcctatcagctcctacacc 93
                |||||||| ||||| |||  ||||||| ||||||||||||||||||| |||||||
Sbjct: 32059731 tttcttaagtacaacagatcttccattcctccatgatcctatcagcttctacacc 32059785
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>dbj|AK069791.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023031N02, full
           insert sequence
          Length = 967

 Score =  145 bits (73), Expect = 1e-31
 Identities = 118/133 (88%)
 Strand = Plus / Minus

                                                                       
Query: 187 agtagccgatgtcggcgtcgtcaacaacaaggtcgccgttgatgagctcgcggtatgcgg 246
           ||||||||||||| |||||||| || || |||| |||| |||||||||| ||||| ||||
Sbjct: 742 agtagccgatgtcagcgtcgtcgacgacgaggttgccggtgatgagctcacggtaggcgg 683

                                                                       
Query: 247 cgacgggccaaatgaagcccctggggatgatcctggcggcgagctcgacgtcgatgatga 306
           |||||||||| ||||| ||||| |||| || | || ||||||||||||||||||||||||
Sbjct: 682 cgacgggccagatgaaccccctcgggaggagcttgacggcgagctcgacgtcgatgatga 623

                        
Query: 307 tctccctcatggc 319
           |||||||||||||
Sbjct: 622 tctccctcatggc 610



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 49/55 (89%)
 Strand = Plus / Minus

                                                                  
Query: 39  tttcttaaatacaagagaggttccatttctccatgatcctatcagctcctacacc 93
           |||||||| ||||| |||  ||||||| ||||||||||||||||||| |||||||
Sbjct: 890 tttcttaagtacaacagatcttccattcctccatgatcctatcagcttctacacc 836
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>dbj|AK060493.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-016-D02, full
           insert sequence
          Length = 997

 Score =  145 bits (73), Expect = 1e-31
 Identities = 118/133 (88%)
 Strand = Plus / Minus

                                                                       
Query: 187 agtagccgatgtcggcgtcgtcaacaacaaggtcgccgttgatgagctcgcggtatgcgg 246
           ||||||||||||| |||||||| || || |||| |||| |||||||||| ||||| ||||
Sbjct: 777 agtagccgatgtcagcgtcgtcgacgacgaggttgccggtgatgagctcacggtaggcgg 718

                                                                       
Query: 247 cgacgggccaaatgaagcccctggggatgatcctggcggcgagctcgacgtcgatgatga 306
           |||||||||| ||||| ||||| |||| || | || ||||||||||||||||||||||||
Sbjct: 717 cgacgggccagatgaaccccctcgggaggagcttgacggcgagctcgacgtcgatgatga 658

                        
Query: 307 tctccctcatggc 319
           |||||||||||||
Sbjct: 657 tctccctcatggc 645



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 49/55 (89%)
 Strand = Plus / Minus

                                                                  
Query: 39  tttcttaaatacaagagaggttccatttctccatgatcctatcagctcctacacc 93
           |||||||| ||||| |||  ||||||| ||||||||||||||||||| |||||||
Sbjct: 920 tttcttaagtacaacagatcttccattcctccatgatcctatcagcttctacacc 866
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>dbj|AK059890.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-208-C12, full
           insert sequence
          Length = 990

 Score =  145 bits (73), Expect = 1e-31
 Identities = 118/133 (88%)
 Strand = Plus / Minus

                                                                       
Query: 187 agtagccgatgtcggcgtcgtcaacaacaaggtcgccgttgatgagctcgcggtatgcgg 246
           ||||||||||||| |||||||| || || |||| |||| |||||||||| ||||| ||||
Sbjct: 765 agtagccgatgtcagcgtcgtcgacgacgaggttgccggtgatgagctcacggtaggcgg 706

                                                                       
Query: 247 cgacgggccaaatgaagcccctggggatgatcctggcggcgagctcgacgtcgatgatga 306
           |||||||||| ||||| ||||| |||| || | || ||||||||||||||||||||||||
Sbjct: 705 cgacgggccagatgaaccccctcgggaggagcttgacggcgagctcgacgtcgatgatga 646

                        
Query: 307 tctccctcatggc 319
           |||||||||||||
Sbjct: 645 tctccctcatggc 633



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 49/55 (89%)
 Strand = Plus / Minus

                                                                  
Query: 39  tttcttaaatacaagagaggttccatttctccatgatcctatcagctcctacacc 93
           |||||||| ||||| |||  ||||||| ||||||||||||||||||| |||||||
Sbjct: 913 tttcttaagtacaacagatcttccattcctccatgatcctatcagcttctacacc 859
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>gb|AY103687.1| Zea mays PCO106710 mRNA sequence
          Length = 1242

 Score =  145 bits (73), Expect = 1e-31
 Identities = 128/145 (88%), Gaps = 1/145 (0%)
 Strand = Plus / Minus

                                                                       
Query: 177 gcagctagttagtagccgatgtcggcgtcgtcaacaacaaggtcgccgttgatgagctcg 236
           ||||||||| |||||||||||||   |||||| || || ||||| |||||||||||||||
Sbjct: 802 gcagctagt-agtagccgatgtccttgtcgtcgacgacgaggtctccgttgatgagctcg 744

                                                                       
Query: 237 cggtatgcggcgacgggccaaatgaagcccctggggatgatcctggcggcgagctcgacg 296
           ||||| || ||||||||||| ||||| |||||||||| ||  | || |||||||||||||
Sbjct: 743 cggtaggccgcgacgggccagatgaaccccctggggaggaggcgggtggcgagctcgacg 684

                                    
Query: 297 tcgatgatgatctccctcatggcgg 321
           |||||||||||||||||||||||||
Sbjct: 683 tcgatgatgatctccctcatggcgg 659
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>gb|AF093634.1|AF093634 Oryza sativa photosystem-1 F subunit precursor (PSI-F) mRNA,
           complete cds
          Length = 996

 Score =  145 bits (73), Expect = 1e-31
 Identities = 118/133 (88%)
 Strand = Plus / Minus

                                                                       
Query: 187 agtagccgatgtcggcgtcgtcaacaacaaggtcgccgttgatgagctcgcggtatgcgg 246
           ||||||||||||| |||||||| || || |||| |||| |||||||||| ||||| ||||
Sbjct: 758 agtagccgatgtcagcgtcgtcgacgacgaggttgccggtgatgagctcacggtaggcgg 699

                                                                       
Query: 247 cgacgggccaaatgaagcccctggggatgatcctggcggcgagctcgacgtcgatgatga 306
           |||||||||| ||||| ||||| |||| || | || ||||||||||||||||||||||||
Sbjct: 698 cgacgggccagatgaaccccctcgggaggagcttgacggcgagctcgacgtcgatgatga 639

                        
Query: 307 tctccctcatggc 319
           |||||||||||||
Sbjct: 638 tctccctcatggc 626



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 49/55 (89%)
 Strand = Plus / Minus

                                                                  
Query: 39  tttcttaaatacaagagaggttccatttctccatgatcctatcagctcctacacc 93
           |||||||| ||||| |||  ||||||| ||||||||||||||||||| |||||||
Sbjct: 901 tttcttaagtacaacagatcttccattcctccatgatcctatcagcttctacacc 847
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>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence
          Length = 3806533

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 187    agtagccgatgtcggcgtcgtcaac 211
              ||||||||||||||||| |||||||
Sbjct: 599732 agtagccgatgtcggcgccgtcaac 599756
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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 198    tcggcgtcgtcaacaacaagg 218
              |||||||||||||||||||||
Sbjct: 505766 tcggcgtcgtcaacaacaagg 505746
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>gb|AC163992.9| Mus musculus chromosome 1, clone RP23-193H10, complete sequence
          Length = 198062

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 256   aaatgaagcccctggggatg 275
             ||||||||||||||||||||
Sbjct: 47389 aaatgaagcccctggggatg 47408
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>gb|AC094571.8| Rattus norvegicus 20 BAC CH230-4L21 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 230137

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 41    tcttaaatacaagagaggtt 60
             ||||||||||||||||||||
Sbjct: 82654 tcttaaatacaagagaggtt 82673
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>emb|AL392085.12| Human DNA sequence from clone RP11-225L6 on chromosome 9 Contains part of
              the ASTN2 gene for astrotactin2 (KIAA0634), complete
              sequence
          Length = 159836

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 251    gggccaaatgaagcccctggggat 274
              ||||||||||||| ||||||||||
Sbjct: 135468 gggccaaatgaaggccctggggat 135491
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>emb|AL445928.8| Human DNA sequence from clone RP11-305E17 on chromosome 1, complete
              sequence
          Length = 173580

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 63     atttctccatgatcctatcagctcctac 90
              ||||||||||||||| |||| |||||||
Sbjct: 156375 atttctccatgatccaatcacctcctac 156348
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>gb|AC087698.5| Homo sapiens chromosome 8, clone RP11-25K19, complete sequence
          Length = 150750

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 24    caagattgggttcagtttct 43
             ||||||||||||||||||||
Sbjct: 10979 caagattgggttcagtttct 10998
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>gb|AC105282.5| Homo sapiens chromosome 18, clone RP11-452F20, complete sequence
          Length = 167258

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 32    ggttcagtttcttaaataca 51
             ||||||||||||||||||||
Sbjct: 17437 ggttcagtttcttaaataca 17456
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>gb|AC090152.4| Homo sapiens chromosome 8, clone RP11-554M1, complete sequence
          Length = 118755

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 24    caagattgggttcagtttct 43
             ||||||||||||||||||||
Sbjct: 14523 caagattgggttcagtttct 14504
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>gb|CP000232.1| Moorella thermoacetica ATCC 39073, complete genome
          Length = 2628784

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 280     tggcggcgagctcgacgtcg 299
               ||||||||||||||||||||
Sbjct: 1823593 tggcggcgagctcgacgtcg 1823612
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>gb|AF139468.2|AF139468 Vigna radiata photosystem I reaction center subunit III (CipPsaF)
           mRNA, complete cds; nuclear gene for chloroplast product
          Length = 885

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 44/52 (84%)
 Strand = Plus / Minus

                                                               
Query: 216 aggtcgccgttgatgagctcgcggtatgcggcgacgggccaaatgaagcccc 267
           ||||| |||||||||||||| | ||| || || ||||||||| |||| ||||
Sbjct: 729 aggtcaccgttgatgagctctctgtaggcagcaacgggccaactgaaccccc 678
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>emb|AL513406.1|CNS07EFT Human DNA sequence chromosome 8 of Homo sapiens (human)
          Length = 204955

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 24     caagattgggttcagtttct 43
              ||||||||||||||||||||
Sbjct: 141244 caagattgggttcagtttct 141225
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>gb|AC110518.20| Mus musculus chromosome 1, clone RP23-10P1, complete sequence
          Length = 198526

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 256   aaatgaagcccctggggatg 275
             ||||||||||||||||||||
Sbjct: 10392 aaatgaagcccctggggatg 10373
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>gb|AE008384.1| Methanosarcina mazei strain Goe1, complete genome
          Length = 4096345

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 53     gagaggttccatttctccat 72
              ||||||||||||||||||||
Sbjct: 418732 gagaggttccatttctccat 418713


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,309,489
Number of Sequences: 3902068
Number of extensions: 2309489
Number of successful extensions: 42375
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 42207
Number of HSP's gapped (non-prelim): 168
length of query: 321
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 299
effective length of database: 17,147,199,772
effective search space: 5127012731828
effective search space used: 5127012731828
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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