>AROB_CAUCR (Q9A434) 3-dehydroquinate synthase (EC 4.2.3.4)|
          Length = 370

 Score = 29.3 bits (64), Expect = 5.0
 Identities = 21/48 (43%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = -3

Query: 454 AVVALCPDGDAQGELLKSACQEAGFVVEQIEVAPSALTK--EELASLS 317
           AVV     G   GE L +A Q AG  V+ I +AP   +K  E LA LS
Sbjct: 41  AVVTDAHVGAHHGERLSAALQGAGITVDLITIAPGEESKSFEGLADLS 88

>NCOR1_MOUSE (Q60974) Nuclear receptor corepressor 1 (N-CoR1) (N-CoR) (Retinoid|
           X receptor-interacting protein 13) (RIP13)
          Length = 2453

 Score = 29.3 bits (64), Expect = 5.0
 Identities = 18/44 (40%), Positives = 22/44 (50%)
 Frame = +3

Query: 327 ASSSFVSADGATSICSTTKPASWHADFRSSPCASPSGQRATTAP 458
           A SS  S++ A S  +T   A   A    +PCASPS    TT P
Sbjct: 746 AKSSEDSSENAASRGNTEPVAELEATTDPAPCASPSSAVPTTKP 789

>PRP46_YEAST (Q12417) Pre-mRNA-splicing factor PRP46 (Pre-mRNA-processing|
           protein 46) (Complexed with CEF1 protein 1)
           (PRP19-associated complex protein 50) (PRP
           nineteen-associated complex protein 50)
          Length = 451

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 15/55 (27%), Positives = 28/55 (50%)
 Frame = +1

Query: 145 DPVMT*TNKRK*TPVILLCSHLLPPSQISCFRLDSKTINSGRRAYI*IHEILLAK 309
           D V+   + R   PVI L  H  P +Q+ C  +D + ++S   A + + +++  K
Sbjct: 245 DSVIKLWDMRTRIPVITLVGHKGPINQVQCTPVDPQVVSSSTDATVRLWDVVAGK 299


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,529,710
Number of Sequences: 219361
Number of extensions: 805445
Number of successful extensions: 1928
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1907
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1928
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2909956200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)