ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet115e04 |
|---|---|
| Clone Library Name | barley_pub |
>ZSWM6_MOUSE (Q80TB7) Zinc finger SWIM domain-containing protein 6 (Fragment)| Length = 1017 Score = 31.6 bits (70), Expect = 0.95 Identities = 17/67 (25%), Positives = 36/67 (53%), Gaps = 1/67 (1%) Frame = +3 Query: 243 NCTNRACFHLSPVILFSVHTELTGKELGIDMPLPLFTDLDINILQVNTKQILGFEHWL-T 419 +C N+ F+ + V+ S++ +++ + +P+ + Q+N Q+ F +L T Sbjct: 65 SCGNKDIFYCAHVVALSLYRIRKPEQVKLHLPI------SETLFQMNRDQLQKFVQYLIT 118 Query: 420 VHHTEII 440 VHHTE++ Sbjct: 119 VHHTEVL 125
>RPOC_PSEHT (Q3ILP8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1390 Score = 29.6 bits (65), Expect = 3.6 Identities = 11/44 (25%), Positives = 24/44 (54%) Frame = +3 Query: 267 HLSPVILFSVHTELTGKELGIDMPLPLFTDLDINILQVNTKQIL 398 HL P++ + + + G ++ + +PL + L+ L ++T IL Sbjct: 448 HLHPLVCAAYNADFDGDQMAVHVPLTIEAQLEARALMMSTNNIL 491
>RPOC_COLP3 (Q47UW0) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1406 Score = 28.5 bits (62), Expect = 8.1 Identities = 9/44 (20%), Positives = 24/44 (54%) Frame = +3 Query: 267 HLSPVILFSVHTELTGKELGIDMPLPLFTDLDINILQVNTKQIL 398 HL P++ + + + G ++ + +PL + ++ L ++T +L Sbjct: 448 HLHPLVCAAYNADFDGDQMAVHVPLTIEAQMEARTLMMSTNNVL 491
>RPOC1_MARPO (P06273) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta' subunit) (RNA polymerase beta' subunit) Length = 684 Score = 28.5 bits (62), Expect = 8.1 Identities = 11/49 (22%), Positives = 24/49 (48%) Frame = +3 Query: 252 NRACFHLSPVILFSVHTELTGKELGIDMPLPLFTDLDINILQVNTKQIL 398 N HL P++ + + G ++ + +PL L + +L ++ K +L Sbjct: 472 NGRAIHLHPLVCGGFNADFDGDQMAVHIPLSLEAQAEARLLMLSHKNLL 520
>MSRA_YERPS (Q66F89) Peptide methionine sulfoxide reductase msrA (EC 1.8.4.6)| (Protein-methionine-S-oxide reductase) (Peptide Met(O) reductase) Length = 212 Score = 28.5 bits (62), Expect = 8.1 Identities = 19/70 (27%), Positives = 32/70 (45%) Frame = +2 Query: 191 SKFPLDMLHDLRPSSFR*LHQPRLLPSLSGDPVFGAH*THWQRAGNRYAFASVYRPGHQY 370 + P+ LH + S + + L + +GA WQ+ G Y+ A+ Y GH Sbjct: 21 TSIPVSPLHAVHGHSMTYIPEGMDLAFFAMGCFWGAERLFWQQPGV-YSTAAGYSGGHTP 79 Query: 371 SPSQHEANTG 400 +P+ HE +G Sbjct: 80 NPTYHEVCSG 89
>MSRA_YERPE (Q8ZB94) Peptide methionine sulfoxide reductase msrA (EC 1.8.4.6)| (Protein-methionine-S-oxide reductase) (Peptide Met(O) reductase) Length = 212 Score = 28.5 bits (62), Expect = 8.1 Identities = 19/70 (27%), Positives = 32/70 (45%) Frame = +2 Query: 191 SKFPLDMLHDLRPSSFR*LHQPRLLPSLSGDPVFGAH*THWQRAGNRYAFASVYRPGHQY 370 + P+ LH + S + + L + +GA WQ+ G Y+ A+ Y GH Sbjct: 21 TSIPVSPLHAVHGHSMTYIPEGMDLAFFAMGCFWGAERLFWQQPGV-YSTAAGYSGGHTP 79 Query: 371 SPSQHEANTG 400 +P+ HE +G Sbjct: 80 NPTYHEVCSG 89 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 65,423,464 Number of Sequences: 219361 Number of extensions: 1351792 Number of successful extensions: 2797 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 2761 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2797 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2735358828 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
