ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet115c09 |
|---|---|
| Clone Library Name | barley_pub |
>TM9S3_HUMAN (Q9HD45) Transmembrane 9 superfamily protein member 3 precursor| (SM-11044-binding protein) (EP70-P-iso) Length = 589 Score = 87.8 bits (216), Expect = 1e-17 Identities = 45/87 (51%), Positives = 51/87 (58%) Frame = -3 Query: 406 TYFLLNAENYHWQWTSFFSAASTXXXXXXXXXXXYHVKTKMSGFFQTSFYFGYTLMFXXX 227 TYFLLNAE+Y WQWTSF SAAST Y KTKM G FQTSFYFGY +F Sbjct: 503 TYFLLNAEDYRWQWTSFLSAASTAIYVYMYSFYYYFFKTKMYGLFQTSFYFGYMAVFSTA 562 Query: 226 XXXXXXXXXXXGSTLFVRRIYRNIKCD 146 G++ FVR+IY N+K D Sbjct: 563 LGIMCGAIGYMGTSAFVRKIYTNVKID 589
>TM9S3_MOUSE (Q9ET30) Transmembrane 9 superfamily protein member 3 precursor| Length = 587 Score = 87.8 bits (216), Expect = 1e-17 Identities = 45/87 (51%), Positives = 51/87 (58%) Frame = -3 Query: 406 TYFLLNAENYHWQWTSFFSAASTXXXXXXXXXXXYHVKTKMSGFFQTSFYFGYTLMFXXX 227 TYFLLNAE+Y WQWTSF SAAST Y KTKM G FQTSFYFGY +F Sbjct: 501 TYFLLNAEDYRWQWTSFLSAASTAIYVYMYSFYYYFFKTKMYGLFQTSFYFGYMAVFSTA 560 Query: 226 XXXXXXXXXXXGSTLFVRRIYRNIKCD 146 G++ FVR+IY N+K D Sbjct: 561 LGIMCGAIGYMGTSAFVRKIYTNVKID 587
>TM9S1_RAT (Q66HF2) Transmembrane 9 superfamily protein member 1 precursor| Length = 589 Score = 53.5 bits (127), Expect = 2e-07 Identities = 30/87 (34%), Positives = 39/87 (44%) Frame = -3 Query: 406 TYFLLNAENYHWQWTSFFSAASTXXXXXXXXXXXYHVKTKMSGFFQTSFYFGYTLMFXXX 227 TYF L+ E+Y W W S S ST Y ++ MSG QT +FGY+L+ Sbjct: 503 TYFQLSGEDYRWWWRSVLSVGSTGLFIFLYSVFYYARRSNMSGAVQTVEFFGYSLLTGYV 562 Query: 226 XXXXXXXXXXXGSTLFVRRIYRNIKCD 146 S F+R IY N+K D Sbjct: 563 FFLMLGTISFFSSLKFIRYIYVNLKMD 589
>TM9S1_PONPY (Q5R8F1) Transmembrane 9 superfamily protein member 1 precursor| Length = 606 Score = 53.5 bits (127), Expect = 2e-07 Identities = 30/87 (34%), Positives = 39/87 (44%) Frame = -3 Query: 406 TYFLLNAENYHWQWTSFFSAASTXXXXXXXXXXXYHVKTKMSGFFQTSFYFGYTLMFXXX 227 TYF L+ E+Y W W S S ST Y ++ MSG QT +FGY+L+ Sbjct: 520 TYFQLSGEDYRWWWRSVLSVGSTGLFIFLYSVFYYARRSNMSGAVQTVEFFGYSLLTGYV 579 Query: 226 XXXXXXXXXXXGSTLFVRRIYRNIKCD 146 S F+R IY N+K D Sbjct: 580 FFLMLGTISFFSSLKFIRYIYVNLKMD 606
>TM9S1_MOUSE (Q9DBU0) Transmembrane 9 superfamily protein member 1 precursor| Length = 606 Score = 53.5 bits (127), Expect = 2e-07 Identities = 30/87 (34%), Positives = 39/87 (44%) Frame = -3 Query: 406 TYFLLNAENYHWQWTSFFSAASTXXXXXXXXXXXYHVKTKMSGFFQTSFYFGYTLMFXXX 227 TYF L+ E+Y W W S S ST Y ++ MSG QT +FGY+L+ Sbjct: 520 TYFQLSGEDYRWWWRSVLSVGSTGLFIFLYSVFYYARRSNMSGAVQTVEFFGYSLLTGYV 579 Query: 226 XXXXXXXXXXXGSTLFVRRIYRNIKCD 146 S F+R IY N+K D Sbjct: 580 FFLMLGTISFFSSLKFIRYIYVNLKMD 606
>TM9S1_HUMAN (O15321) Transmembrane 9 superfamily protein member 1 precursor| (hMP70) Length = 606 Score = 53.5 bits (127), Expect = 2e-07 Identities = 30/87 (34%), Positives = 39/87 (44%) Frame = -3 Query: 406 TYFLLNAENYHWQWTSFFSAASTXXXXXXXXXXXYHVKTKMSGFFQTSFYFGYTLMFXXX 227 TYF L+ E+Y W W S S ST Y ++ MSG QT +FGY+L+ Sbjct: 520 TYFQLSGEDYRWWWRSVLSVGSTGLFIFLYSVFYYARRSNMSGAVQTVEFFGYSLLTGYV 579 Query: 226 XXXXXXXXXXXGSTLFVRRIYRNIKCD 146 S F+R IY N+K D Sbjct: 580 FFLMLGTISFFSSLKFIRYIYVNLKMD 606
>TM9S2_MOUSE (P58021) Transmembrane 9 superfamily protein member 2 precursor| Length = 662 Score = 52.4 bits (124), Expect = 5e-07 Identities = 27/86 (31%), Positives = 38/86 (44%) Frame = -3 Query: 403 YFLLNAENYHWQWTSFFSAASTXXXXXXXXXXXYHVKTKMSGFFQTSFYFGYTLMFXXXX 224 YF L AE+YHWQW SF ++ T + K +++G T YFGYT++ Sbjct: 577 YFHLCAEDYHWQWRSFLTSGFTAVYFLIYAIHYFFSKLQITGTASTILYFGYTMIMVLIF 636 Query: 223 XXXXXXXXXXGSTLFVRRIYRNIKCD 146 FV +IY +K D Sbjct: 637 FLFTGTIGFFACFWFVTKIYSVVKVD 662
>TM9S2_RAT (Q66HG5) Transmembrane 9 superfamily protein member 2 precursor| Length = 663 Score = 52.4 bits (124), Expect = 5e-07 Identities = 27/86 (31%), Positives = 38/86 (44%) Frame = -3 Query: 403 YFLLNAENYHWQWTSFFSAASTXXXXXXXXXXXYHVKTKMSGFFQTSFYFGYTLMFXXXX 224 YF L AE+YHWQW SF ++ T + K +++G T YFGYT++ Sbjct: 578 YFHLCAEDYHWQWRSFLTSGFTAVYFLVYAIHYFFSKLQITGTASTILYFGYTMIMVLIF 637 Query: 223 XXXXXXXXXXGSTLFVRRIYRNIKCD 146 FV +IY +K D Sbjct: 638 FLFTGTIGFFACFWFVTKIYSVVKVD 663
>TM9S2_PONPY (Q5R8Y6) Transmembrane 9 superfamily protein member 2 precursor| Length = 663 Score = 52.4 bits (124), Expect = 5e-07 Identities = 27/86 (31%), Positives = 38/86 (44%) Frame = -3 Query: 403 YFLLNAENYHWQWTSFFSAASTXXXXXXXXXXXYHVKTKMSGFFQTSFYFGYTLMFXXXX 224 YF L AE+YHWQW SF ++ T + K +++G T YFGYT++ Sbjct: 578 YFHLCAEDYHWQWRSFLTSGFTAVYFLIYAVHYFFSKLQITGTASTILYFGYTMIMVLIF 637 Query: 223 XXXXXXXXXXGSTLFVRRIYRNIKCD 146 FV +IY +K D Sbjct: 638 FLFTGTIGFFACFWFVTKIYSVVKVD 663
>TM9S2_HUMAN (Q99805) Transmembrane 9 superfamily protein member 2 precursor| (p76) Length = 663 Score = 52.4 bits (124), Expect = 5e-07 Identities = 27/86 (31%), Positives = 38/86 (44%) Frame = -3 Query: 403 YFLLNAENYHWQWTSFFSAASTXXXXXXXXXXXYHVKTKMSGFFQTSFYFGYTLMFXXXX 224 YF L AE+YHWQW SF ++ T + K +++G T YFGYT++ Sbjct: 578 YFHLCAEDYHWQWRSFLTSGFTAVYFLIYAVHYFFSKLQITGTASTILYFGYTMIMVLIF 637 Query: 223 XXXXXXXXXXGSTLFVRRIYRNIKCD 146 FV +IY +K D Sbjct: 638 FLFTGTIGFFACFWFVTKIYSVVKVD 663
>TM9S4_HUMAN (Q92544) Transmembrane 9 superfamily protein member 4| Length = 625 Score = 43.9 bits (102), Expect = 2e-04 Identities = 23/86 (26%), Positives = 35/86 (40%) Frame = -3 Query: 403 YFLLNAENYHWQWTSFFSAASTXXXXXXXXXXXYHVKTKMSGFFQTSFYFGYTLMFXXXX 224 YF L AE+Y W W +F + + + K + F + YFGYT + Sbjct: 540 YFQLCAEDYRWWWRNFLVSGGSAFYVLVYAIFYFVNKLDIVEFIPSLLYFGYTALMVLSF 599 Query: 223 XXXXXXXXXXGSTLFVRRIYRNIKCD 146 + +FVR+IY +K D Sbjct: 600 WLLTGTIGFYAAYMFVRKIYAAVKID 625
>EMP70_YEAST (P32802) Endosomal P24A protein precursor (70 kDa endomembrane| protein) (Pheromone alpha-factor transporter) (Acidic 24 kDa late endocytic intermediate component) Length = 667 Score = 42.7 bits (99), Expect = 4e-04 Identities = 26/87 (29%), Positives = 33/87 (37%) Frame = -3 Query: 406 TYFLLNAENYHWQWTSFFSAASTXXXXXXXXXXXYHVKTKMSGFFQTSFYFGYTLMFXXX 227 TY L EN+ WQW F + K K+ GF Y GY+ + Sbjct: 582 TYHSLCLENWKWQWRGFIIGGA-GCALYVFIHSILFTKFKLGGFTTIVLYVGYSSVISLL 640 Query: 226 XXXXXXXXXXXGSTLFVRRIYRNIKCD 146 S LFVR+IY +IK D Sbjct: 641 CCLVTGSIGFISSMLFVRKIYSSIKVD 667
>NUCM_TRYBB (P21301) NADH-ubiquinone oxidoreductase 49 kDa subunit homolog (EC| 1.6.5.3) (NADH dehydrogenase subunit 7 homolog) Length = 386 Score = 28.9 bits (63), Expect = 6.0 Identities = 11/29 (37%), Positives = 17/29 (58%) Frame = -2 Query: 221 HTLWCYWLSGVNFVCQENLQKHQMRLNCF 135 ++LWC L G++F C E+ + L CF Sbjct: 309 YSLWCCCLPGISFACVEHPKGEYCLLLCF 337 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 48,907,330 Number of Sequences: 219361 Number of extensions: 708914 Number of successful extensions: 1517 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 1493 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1511 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2677159704 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
