Clone Information

BLAST Search Result

Clone Name	rbaet115c04
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_474432.1\| Oryza sativa (japonica cultivar-group), predic...	214	2e-52
2	emb\|AL606686.3\|OSJN00084 Oryza sativa genomic DNA, chromosome 4,...	214	2e-52
3	dbj\|AP008210.1\| Oryza sativa (japonica cultivar-group) genomic D...	214	2e-52
4	dbj\|AK105746.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	214	2e-52
5	emb\|AL732347.3\| Oryza sativa genomic DNA, chromosome 4, BAC clon...	214	2e-52
6	emb\|AL732348.2\| Oryza sativa genomic DNA, chromosome 4, BAC clon...	214	2e-52
7	gb\|AC026843.9\| Homo sapiens chromosome 11, clone RP11-261E12, co...	44	0.38
8	gb\|AC021269.4\|AC021269 Homo sapiens, clone RP11-15D14, complete ...	44	0.38
9	gb\|AC146748.16\| Medicago truncatula clone mth2-65k8, complete se...	42	1.5
10	emb\|AL590728.26\| Human DNA sequence from clone RP11-45G17 on chr...	42	1.5
11	emb\|BX469889.7\| Zebrafish DNA sequence from clone DKEY-156P3 in ...	42	1.5
12	emb\|BX470166.11\| Zebrafish DNA sequence from clone CH211-238N5 i...	42	1.5
13	gb\|AC116130.15\| Mus musculus chromosome 17, clone RP23-98F21, co...	40	6.0
14	gb\|AC158915.4\| Mus musculus chromosome 8, clone RP23-146N20, com...	40	6.0
15	emb\|CR974567.10\| Mouse DNA sequence from clone RP24-316L14 on ch...	40	6.0
16	gb\|AC140268.2\| Mus musculus BAC clone RP23-321K4 from chromosome...	40	6.0
17	gb\|AC141325.1\| Pan troglodytes BAC clone RP43-168D7 from 7, comp...	40	6.0
18	emb\|AL163283.2\|HS21C083 Homo sapiens chromosome 21 segment HS21C083	40	6.0
19	emb\|AL591004.3\| Human DNA sequence from clone RP11-497F24 on chr...	40	6.0
20	emb\|AL353151.26\| Human DNA sequence from clone RP11-307I14 on ch...	40	6.0
21	emb\|AL353692.14\| Human DNA sequence from clone RP11-63K6 on chro...	40	6.0
22	emb\|AL353592.9\| Human DNA sequence from clone RP11-569O12 on chr...	40	6.0
23	emb\|AL132874.30\|HSJ329L24 Human DNA sequence from clone RP3-329L...	40	6.0
24	emb\|AL035555.11\|HS217P22 Human DNA sequence from clone RP1-217P2...	40	6.0
25	gb\|AY152833.1\| Felis catus clone BAC 244e2 major histocompatibli...	40	6.0
26	emb\|AL662891.9\| Mouse DNA sequence from clone RP23-20N14 on chro...	40	6.0
27	emb\|AL954236.1\| Pan troglodytes chromosome 22 clone RP43-054L10 ...	40	6.0
28	emb\|AL954235.1\| Pan troglodytes chromosome 22 clone RP43-030A20 ...	40	6.0
29	gb\|AY053575.1\| Goodenia ovata cytochrome oxidase subunit I gene,...	40	6.0
30	emb\|BX641130.1\|HSM807061 Homo sapiens mRNA; cDNA DKFZp686D13109 ...	40	6.0
31	dbj\|AB227656.1\| Aspergillus oryzae cDNA, contig sequence: AoEST4529	40	6.0
32	gb\|AC022402.5\| Homo sapiens chromosome 06 clone RP11-70I3, compl...	40	6.0
33	dbj\|AP007169.1\| Aspergillus oryzae RIB40 genomic DNA, SC038	40	6.0
34	gb\|AC008650.8\| Homo sapiens chromosome 5 clone CTB-186M2, comple...	40	6.0
35	gb\|AC092812.2\| Homo sapiens chromosome 1 clone RP11-536F12, comp...	40	6.0
36	gb\|AC020918.6\| Homo sapiens chromosome 5 clone CTD-2020C3, compl...	40	6.0
37	gb\|AC018756.5\| Homo sapiens chromosome 5 clone CTC-534K6, comple...	40	6.0
38	gb\|AF064866.2\|AF064866 Homo sapiens chromosome 21 clone PAC 198E...	40	6.0
39	dbj\|AP008212.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.0
40	gb\|AC121140.7\| Mus musculus chromosome 8, clone RP23-429G12, com...	40	6.0
41	gb\|AC011747.8\| Homo sapiens BAC clone RP11-434B12 from 2, comple...	40	6.0
42	gb\|AC007744.2\| Homo sapiens BAC clone RP11-482H16 from 2, comple...	40	6.0
43	gb\|AC067719.12\| Homo sapiens 3 BAC RP11-183L23 (Roswell Park Can...	40	6.0
44	gb\|AC024085.5\|AC024085 Human Chromosome 7 clone RP11-190G13, com...	40	6.0
45	dbj\|BA000043.1\| Geobacillus kaustophilus HTA426 DNA, complete ge...	40	6.0
46	dbj\|AP006055.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.0
47	dbj\|BS000075.1\| Pan troglodytes chromosome 22 clone:RP43-111A01,...	40	6.0
48	dbj\|AP000942.6\| Homo sapiens genomic DNA, chromosome 11 clone:RP...	40	6.0
49	dbj\|AP001830.5\| Homo sapiens genomic DNA, chromosome 11 clone:RP...	40	6.0
50	dbj\|AP001683.1\| Homo sapiens genomic DNA, chromosome 21q, sectio...	40	6.0
51	dbj\|AP001894.4\| Homo sapiens genomic DNA, chromosome 11q, clone:...	40	6.0
52	emb\|BX295542.1\|HS108F13 Homo sapiens chromosome X BAC CEPHB108F1...	40	6.0
53	gb\|AC002422.1\|AC002422 Human Chromosome X, complete sequence	40	6.0
54	emb\|AL732568.8\| Mouse DNA sequence from clone RP23-469G19 on chr...	40	6.0
55	dbj\|AB216340.1\| Equus caballus DNA, microsatellite TKY2397	40	6.0
56	dbj\|AP000472.2\| Homo sapiens genomic DNA, chromosome 21q21.1-q21...	40	6.0

>ref|XM_474432.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1077

 Score =  214 bits (108), Expect = 2e-52
 Identities = 177/200 (88%)
 Strand = Plus / Minus

                                                                        
Query: 225  ggcattgctgtgaacccaccatcgaacacaaagccgcggtatacaccatcgccatatcca 284
            ||||| || |||||||||||||||||||||||||| |||||||| ||||| |  || |||
Sbjct: 1073 ggcatagcagtgaacccaccatcgaacacaaagccacggtatacgccatcactgtaccca 1014

                                                                        
Query: 285  ggaacaccgtccacccagtcccacttgccgccgctgctccctacatcgtcctcctcccac 344
            |||||||| || ||||||||||||||||| |||||| | ||||  || ||||||||||||
Sbjct: 1013 ggaacaccatcaacccagtcccacttgccaccgctgttgcctagctcatcctcctcccac 954

                                                                        
Query: 345  attgccagcttcccgcgaacgcgctttccgccaaaccacaccttgccatcacccccaaac 404
            |||||||||||||| || || ||||||||  |||||||||||||||||||||| ||||||
Sbjct: 953  attgccagcttccctcgcacccgctttccagcaaaccacaccttgccatcaccgccaaac 894

                                
Query: 405  acctttaccttgttgttgcc 424
            ||||| ||||||||||||||
Sbjct: 893  accttgaccttgttgttgcc 874

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>emb|AL606686.3|OSJN00084 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0070M12,
             complete sequence
          Length = 144670

 Score =  214 bits (108), Expect = 2e-52
 Identities = 177/200 (88%)
 Strand = Plus / Plus

                                                                         
Query: 225   ggcattgctgtgaacccaccatcgaacacaaagccgcggtatacaccatcgccatatcca 284
             ||||| || |||||||||||||||||||||||||| |||||||| ||||| |  || |||
Sbjct: 77148 ggcatagcagtgaacccaccatcgaacacaaagccacggtatacgccatcactgtaccca 77207

                                                                         
Query: 285   ggaacaccgtccacccagtcccacttgccgccgctgctccctacatcgtcctcctcccac 344
             |||||||| || ||||||||||||||||| |||||| | ||||  || ||||||||||||
Sbjct: 77208 ggaacaccatcaacccagtcccacttgccaccgctgttgcctagctcatcctcctcccac 77267

                                                                         
Query: 345   attgccagcttcccgcgaacgcgctttccgccaaaccacaccttgccatcacccccaaac 404
             |||||||||||||| || || ||||||||  |||||||||||||||||||||| ||||||
Sbjct: 77268 attgccagcttccctcgcacccgctttccagcaaaccacaccttgccatcaccgccaaac 77327

                                 
Query: 405   acctttaccttgttgttgcc 424
             ||||| ||||||||||||||
Sbjct: 77328 accttgaccttgttgttgcc 77347

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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  214 bits (108), Expect = 2e-52
 Identities = 177/200 (88%)
 Strand = Plus / Plus

                                                                            
Query: 225      ggcattgctgtgaacccaccatcgaacacaaagccgcggtatacaccatcgccatatcca 284
                ||||| || |||||||||||||||||||||||||| |||||||| ||||| |  || |||
Sbjct: 35140645 ggcatagcagtgaacccaccatcgaacacaaagccacggtatacgccatcactgtaccca 35140704

                                                                            
Query: 285      ggaacaccgtccacccagtcccacttgccgccgctgctccctacatcgtcctcctcccac 344
                |||||||| || ||||||||||||||||| |||||| | ||||  || ||||||||||||
Sbjct: 35140705 ggaacaccatcaacccagtcccacttgccaccgctgttgcctagctcatcctcctcccac 35140764

                                                                            
Query: 345      attgccagcttcccgcgaacgcgctttccgccaaaccacaccttgccatcacccccaaac 404
                |||||||||||||| || || ||||||||  |||||||||||||||||||||| ||||||
Sbjct: 35140765 attgccagcttccctcgcacccgctttccagcaaaccacaccttgccatcaccgccaaac 35140824

                                    
Query: 405      acctttaccttgttgttgcc 424
                ||||| ||||||||||||||
Sbjct: 35140825 accttgaccttgttgttgcc 35140844

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>dbj|AK105746.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-B06, full
            insert sequence
          Length = 1527

 Score =  214 bits (108), Expect = 2e-52
 Identities = 177/200 (88%)
 Strand = Plus / Minus

                                                                        
Query: 225  ggcattgctgtgaacccaccatcgaacacaaagccgcggtatacaccatcgccatatcca 284
            ||||| || |||||||||||||||||||||||||| |||||||| ||||| |  || |||
Sbjct: 1276 ggcatagcagtgaacccaccatcgaacacaaagccacggtatacgccatcactgtaccca 1217

                                                                        
Query: 285  ggaacaccgtccacccagtcccacttgccgccgctgctccctacatcgtcctcctcccac 344
            |||||||| || ||||||||||||||||| |||||| | ||||  || ||||||||||||
Sbjct: 1216 ggaacaccatcaacccagtcccacttgccaccgctgttgcctagctcatcctcctcccac 1157

                                                                        
Query: 345  attgccagcttcccgcgaacgcgctttccgccaaaccacaccttgccatcacccccaaac 404
            |||||||||||||| || || ||||||||  |||||||||||||||||||||| ||||||
Sbjct: 1156 attgccagcttccctcgcacccgctttccagcaaaccacaccttgccatcaccgccaaac 1097

                                
Query: 405  acctttaccttgttgttgcc 424
            ||||| ||||||||||||||
Sbjct: 1096 accttgaccttgttgttgcc 1077

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>emb|AL732347.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0723C07, complete
             sequence
          Length = 112897

 Score =  214 bits (108), Expect = 2e-52
 Identities = 177/200 (88%)
 Strand = Plus / Plus

                                                                         
Query: 225   ggcattgctgtgaacccaccatcgaacacaaagccgcggtatacaccatcgccatatcca 284
             ||||| || |||||||||||||||||||||||||| |||||||| ||||| |  || |||
Sbjct: 95740 ggcatagcagtgaacccaccatcgaacacaaagccacggtatacgccatcactgtaccca 95799

                                                                         
Query: 285   ggaacaccgtccacccagtcccacttgccgccgctgctccctacatcgtcctcctcccac 344
             |||||||| || ||||||||||||||||| |||||| | ||||  || ||||||||||||
Sbjct: 95800 ggaacaccatcaacccagtcccacttgccaccgctgttgcctagctcatcctcctcccac 95859

                                                                         
Query: 345   attgccagcttcccgcgaacgcgctttccgccaaaccacaccttgccatcacccccaaac 404
             |||||||||||||| || || ||||||||  |||||||||||||||||||||| ||||||
Sbjct: 95860 attgccagcttccctcgcacccgctttccagcaaaccacaccttgccatcaccgccaaac 95919

                                 
Query: 405   acctttaccttgttgttgcc 424
             ||||| ||||||||||||||
Sbjct: 95920 accttgaccttgttgttgcc 95939

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>emb|AL732348.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0701F11, complete
            sequence
          Length = 82895

 Score =  214 bits (108), Expect = 2e-52
 Identities = 177/200 (88%)
 Strand = Plus / Plus

                                                                        
Query: 225  ggcattgctgtgaacccaccatcgaacacaaagccgcggtatacaccatcgccatatcca 284
            ||||| || |||||||||||||||||||||||||| |||||||| ||||| |  || |||
Sbjct: 9567 ggcatagcagtgaacccaccatcgaacacaaagccacggtatacgccatcactgtaccca 9626

                                                                        
Query: 285  ggaacaccgtccacccagtcccacttgccgccgctgctccctacatcgtcctcctcccac 344
            |||||||| || ||||||||||||||||| |||||| | ||||  || ||||||||||||
Sbjct: 9627 ggaacaccatcaacccagtcccacttgccaccgctgttgcctagctcatcctcctcccac 9686

                                                                        
Query: 345  attgccagcttcccgcgaacgcgctttccgccaaaccacaccttgccatcacccccaaac 404
            |||||||||||||| || || ||||||||  |||||||||||||||||||||| ||||||
Sbjct: 9687 attgccagcttccctcgcacccgctttccagcaaaccacaccttgccatcaccgccaaac 9746

                                
Query: 405  acctttaccttgttgttgcc 424
            ||||| ||||||||||||||
Sbjct: 9747 accttgaccttgttgttgcc 9766

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>gb|AC026843.9| Homo sapiens chromosome 11, clone RP11-261E12, complete sequence
          Length = 166287

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 188   tggaatatcttttttccatcag 209
             ||||||||||||||||||||||
Sbjct: 44264 tggaatatcttttttccatcag 44243

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>gb|AC021269.4|AC021269 Homo sapiens, clone RP11-15D14, complete sequence
          Length = 144609

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 188    tggaatatcttttttccatcag 209
              ||||||||||||||||||||||
Sbjct: 137794 tggaatatcttttttccatcag 137773

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>gb|AC146748.16| Medicago truncatula clone mth2-65k8, complete sequence
          Length = 113744

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 47    tacaacaactgaagtatttca 67
             |||||||||||||||||||||
Sbjct: 91351 tacaacaactgaagtatttca 91371

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>emb|AL590728.26| Human DNA sequence from clone RP11-45G17 on chromosome 1 Contains the
             5' UTR of the HMGCL gene for
             3-hydroxymethyl-3-methylglutaryl-Coenzyme A lyase
             (hydroxymethylglutaricaciduria) and the FUCA1 gene for
             fucosidase (alpha-L-1, tissue), complete sequence
          Length = 46115

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 50    aacaactgaagtatttcatca 70
             |||||||||||||||||||||
Sbjct: 41662 aacaactgaagtatttcatca 41682

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>emb|BX469889.7| Zebrafish DNA sequence from clone DKEY-156P3 in linkage group 18,
              complete sequence
          Length = 177975

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 88     gatgtaaataaaatgtatgga 108
              |||||||||||||||||||||
Sbjct: 120884 gatgtaaataaaatgtatgga 120864

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>emb|BX470166.11| Zebrafish DNA sequence from clone CH211-238N5 in linkage group 18,
             complete sequence
          Length = 117241

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 88    gatgtaaataaaatgtatgga 108
             |||||||||||||||||||||
Sbjct: 26869 gatgtaaataaaatgtatgga 26889

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>gb|AC116130.15| Mus musculus chromosome 17, clone RP23-98F21, complete sequence
          Length = 228842

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 199   ttttccatcagccttcacggggtc 222
             ||||||||||||||||| ||||||
Sbjct: 57866 ttttccatcagccttcagggggtc 57889

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>gb|AC158915.4| Mus musculus chromosome 8, clone RP23-146N20, complete sequence
          Length = 207367

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 183   cagtctggaatatctttttt 202
             ||||||||||||||||||||
Sbjct: 88516 cagtctggaatatctttttt 88497

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>emb|CR974567.10| Mouse DNA sequence from clone RP24-316L14 on chromosome 17, complete
             sequence
          Length = 188926

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 199   ttttccatcagccttcacggggtc 222
             ||||||||||||||||| ||||||
Sbjct: 31935 ttttccatcagccttcagggggtc 31912

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>gb|AC140268.2| Mus musculus BAC clone RP23-321K4 from chromosome 7, complete sequence
          Length = 193572

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 334   cctcctcccacattgccagc 353
             ||||||||||||||||||||
Sbjct: 79393 cctcctcccacattgccagc 79412

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>gb|AC141325.1| Pan troglodytes BAC clone RP43-168D7 from 7, complete sequence
          Length = 195031

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 188    tggaatatcttttttccatc 207
              ||||||||||||||||||||
Sbjct: 133142 tggaatatcttttttccatc 133123

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>emb|AL163283.2|HS21C083 Homo sapiens chromosome 21 segment HS21C083
          Length = 340000

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 188    tggaatatcttttttccatc 207
              ||||||||||||||||||||
Sbjct: 232602 tggaatatcttttttccatc 232583

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>emb|AL591004.3| Human DNA sequence from clone RP11-497F24 on chromosome 6, complete
             sequence
          Length = 159845

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 188   tggaatatcttttttccatc 207
             ||||||||||||||||||||
Sbjct: 53803 tggaatatcttttttccatc 53784

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>emb|AL353151.26| Human DNA sequence from clone RP11-307I14 on chromosome 9 Contains the
             5' end of the AK3L1 gene for adenylate kinase 3 like 1
             (AK3), a ribosomal protein S5 (RPS5) pseudogene, the 5'
             end of the gene for RNA cyclase homolog (RNAC), a
             Kruppel-like factor 4 (gut) (KLF4) pseudogene and 2 CpG
             islands, complete sequence
          Length = 112573

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 188   tggaatatcttttttccatc 207
             ||||||||||||||||||||
Sbjct: 66658 tggaatatcttttttccatc 66639

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>emb|AL353692.14| Human DNA sequence from clone RP11-63K6 on chromosome 6 Contains a novel
              pseudogene, the 5' end of the MDN1 gene for midasin homolog
              (yeast), the CASP8AP2 gene for CASP8 associated protein 2,
              a ribosomal protein L22 (RPL22) pseudogene, a novel
              pseudogene similar to G protein pathway suppressor 1
              (GPS1), the gene for connexin 62 (CX62), a novel gene, the
              3' part of the BACH2 gene for BTB and CNC homology 1 basic
              leucine zipper transcription factor 2 and four CpG islands,
              complete sequence
          Length = 137184

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 188    tggaatatcttttttccatc 207
              ||||||||||||||||||||
Sbjct: 110836 tggaatatcttttttccatc 110855

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>emb|AL353592.9| Human DNA sequence from clone RP11-569O12 on chromosome 13, complete
             sequence
          Length = 63325

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 24    cagatcatttcatgttcatt 43
             ||||||||||||||||||||
Sbjct: 24159 cagatcatttcatgttcatt 24140

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>emb|AL132874.30|HSJ329L24 Human DNA sequence from clone RP3-329L24 on chromosome 6q22.1-22.33
             Contains three novel genes (FLJ20170, FLJ22085), the 3'
             end of a novel gene containing FLJ13942 and a CpG island,
             complete sequence
          Length = 112638

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 187   ctggaatatcttttttccat 206
             ||||||||||||||||||||
Sbjct: 81382 ctggaatatcttttttccat 81363

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>emb|AL035555.11|HS217P22 Human DNA sequence from clone RP1-217P22 on chromosome 6p21.1-21.31
             Contains part of the DNAH8 gene for dynein axonemal heavy
             polypeptide 8 and a novel pseudogene similar to part of
             zuotin related factor-1 (ZRF1), complete sequence
          Length = 130796

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 78    aaccaagtacgatgtaaata 97
             ||||||||||||||||||||
Sbjct: 85437 aaccaagtacgatgtaaata 85456

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>gb|AY152833.1| Felis catus clone BAC 244e2 major histocompatiblity complex classical
             class II region, partial sequence
          Length = 147595

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 188   tggaatatcttttttccatc 207
             ||||||||||||||||||||
Sbjct: 59961 tggaatatcttttttccatc 59980

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>emb|AL662891.9| Mouse DNA sequence from clone RP23-20N14 on chromosome 11 Contains the
              Psme4 gene for proteasome (prosome, macropain) activator
              subunit 4, the Gpr75 gene for G protein-coupled receptor
              75, a novel pseudogene, a PDZ and LIM domain 1 (elfin)
              (Pdlim1) pseudogene, two novel genes, the 5' end of the
              Asb3 gene for ankyrin repeat and SOCS box-containing
              protein 3, a methyl-CpG binding domain protein 2
              interacting protein (Mbdin) pseudogene and a CpG island,
              complete sequence
          Length = 244971

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 188    tggaatatcttttttccatc 207
              ||||||||||||||||||||
Sbjct: 152568 tggaatatcttttttccatc 152587

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>emb|AL954236.1| Pan troglodytes chromosome 22 clone RP43-054L10 map 22q22.2-q22.3,
             complete sequence
          Length = 195913

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 188   tggaatatcttttttccatc 207
             ||||||||||||||||||||
Sbjct: 38744 tggaatatcttttttccatc 38725

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>emb|AL954235.1| Pan troglodytes chromosome 22 clone RP43-030A20 map 22q22.2-q22.3,
              complete sequence
          Length = 169458

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 188    tggaatatcttttttccatc 207
              ||||||||||||||||||||
Sbjct: 138257 tggaatatcttttttccatc 138238

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>gb|AY053575.1| Goodenia ovata cytochrome oxidase subunit I gene, partial cds;
           mitochondrial gene for mitochondrial product
          Length = 1388

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 290 accgtccacccagtcccact 309
           ||||||||||||||||||||
Sbjct: 300 accgtccacccagtcccact 281

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>emb|BX641130.1|HSM807061 Homo sapiens mRNA; cDNA DKFZp686D13109 (from clone DKFZp686D13109)
          Length = 8870

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 188  tggaatatcttttttccatc 207
            ||||||||||||||||||||
Sbjct: 8332 tggaatatcttttttccatc 8351

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>dbj|AB227656.1| Aspergillus oryzae cDNA, contig sequence: AoEST4529
          Length = 1020

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 284 aggaacaccgtccacccagtccca 307
           ||||||||||||| ||||||||||
Sbjct: 796 aggaacaccgtccccccagtccca 773

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>gb|AC022402.5| Homo sapiens chromosome 06 clone RP11-70I3, complete sequence
          Length = 164270

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 78    aaccaagtacgatgtaaata 97
             ||||||||||||||||||||
Sbjct: 62464 aaccaagtacgatgtaaata 62483

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>dbj|AP007169.1| Aspergillus oryzae RIB40 genomic DNA, SC038
          Length = 1725576

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 284     aggaacaccgtccacccagtccca 307
               ||||||||||||| ||||||||||
Sbjct: 1300753 aggaacaccgtccccccagtccca 1300776

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>gb|AC008650.8| Homo sapiens chromosome 5 clone CTB-186M2, complete sequence
          Length = 139226

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 188   tggaatatcttttttccatc 207
             ||||||||||||||||||||
Sbjct: 77326 tggaatatcttttttccatc 77307

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>gb|AC092812.2| Homo sapiens chromosome 1 clone RP11-536F12, complete sequence
          Length = 160903

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 185   gtctggaatatcttttttcc 204
             ||||||||||||||||||||
Sbjct: 22661 gtctggaatatcttttttcc 22680

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>gb|AC020918.6| Homo sapiens chromosome 5 clone CTD-2020C3, complete sequence
          Length = 175425

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 188    tggaatatcttttttccatc 207
              ||||||||||||||||||||
Sbjct: 141391 tggaatatcttttttccatc 141410

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>gb|AC018756.5| Homo sapiens chromosome 5 clone CTC-534K6, complete sequence
          Length = 122005

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 188    tggaatatcttttttccatc 207
              ||||||||||||||||||||
Sbjct: 109202 tggaatatcttttttccatc 109221

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>gb|AF064866.2|AF064866 Homo sapiens chromosome 21 clone PAC 198E8, map 21q22.3, complete
             sequence
          Length = 119847

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 188   tggaatatcttttttccatc 207
             ||||||||||||||||||||
Sbjct: 45913 tggaatatcttttttccatc 45894

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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 390      ccatcacccccaaacacctt 409
                ||||||||||||||||||||
Sbjct: 27649217 ccatcacccccaaacacctt 27649198

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>gb|AC121140.7| Mus musculus chromosome 8, clone RP23-429G12, complete sequence
          Length = 201440

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 183   cagtctggaatatctttttt 202
             ||||||||||||||||||||
Sbjct: 41586 cagtctggaatatctttttt 41567

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>gb|AC011747.8| Homo sapiens BAC clone RP11-434B12 from 2, complete sequence
          Length = 177433

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 188   tggaatatcttttttccatc 207
             ||||||||||||||||||||
Sbjct: 11992 tggaatatcttttttccatc 11973

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>gb|AC007744.2| Homo sapiens BAC clone RP11-482H16 from 2, complete sequence
          Length = 199218

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 188   tggaatatcttttttccatc 207
             ||||||||||||||||||||
Sbjct: 24610 tggaatatcttttttccatc 24591

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>gb|AC067719.12| Homo sapiens 3 BAC RP11-183L23 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 172945

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 188   tggaatatcttttttccatc 207
             ||||||||||||||||||||
Sbjct: 69201 tggaatatcttttttccatc 69220

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>gb|AC024085.5|AC024085 Human Chromosome 7 clone RP11-190G13, complete sequence
          Length = 168405

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 188    tggaatatcttttttccatc 207
              ||||||||||||||||||||
Sbjct: 158475 tggaatatcttttttccatc 158494

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>dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete genome
          Length = 3544776

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 105     tggagatatcaattcctctt 124
               ||||||||||||||||||||
Sbjct: 3332914 tggagatatcaattcctctt 3332933

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>dbj|AP006055.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0778G11
          Length = 59211

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 390   ccatcacccccaaacacctt 409
             ||||||||||||||||||||
Sbjct: 53400 ccatcacccccaaacacctt 53381

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>dbj|BS000075.1| Pan troglodytes chromosome 22 clone:RP43-111A01, map 22, complete
             sequences
          Length = 160980

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 188   tggaatatcttttttccatc 207
             ||||||||||||||||||||
Sbjct: 40502 tggaatatcttttttccatc 40521

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>dbj|AP000942.6| Homo sapiens genomic DNA, chromosome 11 clone:RP11-864G5, complete
              sequence
          Length = 185984

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 188    tggaatatcttttttccatc 207
              ||||||||||||||||||||
Sbjct: 164451 tggaatatcttttttccatc 164470

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>dbj|AP001830.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-315O6, complete
             sequence
          Length = 214483

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 188   tggaatatcttttttccatc 207
             ||||||||||||||||||||
Sbjct: 40396 tggaatatcttttttccatc 40415

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>dbj|AP001683.1| Homo sapiens genomic DNA, chromosome 21q, section 27/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 188   tggaatatcttttttccatc 207
             ||||||||||||||||||||
Sbjct: 28641 tggaatatcttttttccatc 28660

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>dbj|AP001894.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-606E8, complete
              sequence
          Length = 151452

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 188    tggaatatcttttttccatc 207
              ||||||||||||||||||||
Sbjct: 132615 tggaatatcttttttccatc 132634

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>emb|BX295542.1|HS108F13 Homo sapiens chromosome X BAC CEPHB108F13 map Xq13 markers PHKA1-DXS227,
              complete sequence
          Length = 123101

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 188    tggaatatcttttttccatc 207
              ||||||||||||||||||||
Sbjct: 112089 tggaatatcttttttccatc 112070

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>gb|AC002422.1|AC002422 Human Chromosome X, complete sequence
          Length = 160091

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 188   tggaatatcttttttccatc 207
             ||||||||||||||||||||
Sbjct: 71015 tggaatatcttttttccatc 70996

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>emb|AL732568.8| Mouse DNA sequence from clone RP23-469G19 on chromosome 4, complete
             sequence
          Length = 169474

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 188   tggaatatcttttttccatc 207
             ||||||||||||||||||||
Sbjct: 46304 tggaatatcttttttccatc 46285

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>dbj|AB216340.1| Equus caballus DNA, microsatellite TKY2397
          Length = 391

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 188 tggaatatcttttttccatc 207
           ||||||||||||||||||||
Sbjct: 67  tggaatatcttttttccatc 86

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>dbj|AP000472.2| Homo sapiens genomic DNA, chromosome 21q21.1-q21.2, clone:B258A5,
             LL56-APP region, complete sequence
          Length = 169328

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 188   tggaatatcttttttccatc 207
             ||||||||||||||||||||
Sbjct: 22358 tggaatatcttttttccatc 22377


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,979,170
Number of Sequences: 3902068
Number of extensions: 3979170
Number of successful extensions: 78068
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 77926
Number of HSP's gapped (non-prelim): 142
length of query: 446
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 424
effective length of database: 17,147,199,772
effective search space: 7270412703328
effective search space used: 7270412703328
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result